Spo23314 (gene) | SpinachBase

Overview


Name	Spo23314
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 43522505 .. 43525541 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGGTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGAAAATGAAGCGAATTCTTGGAAATCAGAATTTATTTTGAGTGAATAATTAGTTAATTGTTCTATAGCGACGAGTTAATTTGGAAGTGTTTAGAAACACGTGATATATTATTATTATTTTTAGGCGCTATTGAAGTTTGATCATGTTTCTCTGTCTTTTGGGATCCACATGCTGACCTAATTTTTGGGTGTGGTTAAAATTGAAGTGATGTTGTTTTCTCATGTTTGAGTGGGGGCATATGTATTTTGTTTGTTTGTTTCCTTGTAAGTTCTTGATGAGTTGAGTAAGTTTAGGGGATCCTTTCTTCAAAAAAGTTACCAATAATTGATTGGGTTCACTCCAAATTGAGCTGTGGATTAATAGTATCAGGTTAGTAGAAATAAGGTATTGAGATTTGAGACAATAGAATTGGATGTTTAACAGCCAATTTACTCCCATTTTTCATTGATTTGTTTTCAGATTAGAAGCGGTAGACCTTGAATGCTCCCGTCCCTTTCCCAATTGTATTTCCAGTGAATTCGTTTATGTTTTCTTGATTGGATGACTTGGTTTCTTGTTGAATTCAATTTTGATGAAGAAGAAAAATATTTACCACTGCAAAAATTTGGGTGTACAGTTTACTAGTTTACTTATTGATTGTCTGGGTTTAGTAATTAGTAGTGGAGGAAATCGAGGAATGATGAATCAGCTTTTACGAATGTTAAATGAATAAATGATATTTGCAATGAATTTTGGTCTAATGTTAGTAAAGAAGTTAAATAAGATAGCTGCAAACTCGTAATTTTTACTAAAATTTCTCTTTAGAGTAGATAATGTTGTCAACTACCATTAGTATGTGCTACTTCCTTTGATGAGTGTGAGTTTTGTCTCTATATATTGTTTGTGCTATTTTGTCTTTGCCCTTTATTAGTTACAGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGTTATTTGGTGACTATATATGCATGTGTATATATGTTTCAAAAGAACACATAAAAGGCGTATTCAACCATTTGTATTGATTGCTTGAGTTTGTAATGTCAGCTTGTGCGGGTTCTTGAACATTCGTGTATTTTGCAGGTCTATTCTAGTGTTTGTGAAGACAACTAATTGATTTATCATTAACAGGTACTTGAAATTAAGGTCTTTTACTTAGATAATATCTATGCTTGGCAATAATGGTATGAGTGTCGGTCTTAACCTTGGGATTTTACTTTTGTTTGTATTATTTGTGGTGATTTTAAGTTGGCAGAAACAACTTTAAACTGTTGCAGTGTGAGTTTGTGCAGCTACTTTGATTATTGAATTGGTTTTTCTTTTTTTCCCCCAAGGAGTTCATTCAAACATAAAATTTGGTCTTGATTTATTTTATTTATAATAAAAACATGGTTATCTCTGGCTGTTTTCTTGTTTAGTTACATTATAATTTTGTGGGTATTATGATTTTGGTGTTTGAGCTTGCTTGGCATGAATGATCCATTTTGATTGTCTTAATTGGAACAAAATCAGTCTCAGATACATCTTAATTATACATTCAAGCTTGAAAGATACTCTTTTCTGGTTCTCGATTATTGAAGAACAATGAACTTTCTGACCAACTTATATTATACAATTTCAAACACATGTGAGAGATACTTAGTGATGTATATGCATACACTCTAAGGTTCTCTTGTCGATCTCAGTTAAGTGATTGATCTATTAACCTTTAAGTTTTGATTTAGCCCTGATCTTGTACTTACTTTTTACCTGTAAAACAAAAACCTCATTTTGTGATCCTTTGTCAGTCGTTGAACAAGTTTTTTGCAAAGTGTGTATCAGTTATGTTACCTATGATTCTTTGGATTCCCTATAGTTTGAACTTTGAAATCAGTTTCTTGCTACTTTGATGTGATCAAAACTCAGTCATCATCCGTGTTACTTCCATTATTTCCGTTATGTACTTCATGAAATGTATGTAGAGATTCTTAGATCATAGATGCTGATGCAATAATAACGTGTAGAAAATCTTCAGTCTGTATGAAATTTCTCGCCTGAGAAATGGTTTGTCTTCCTCCCTATAACCTAATGAACTCTTTTCATGGATATTTCTGCTTTTGTGCGTTGGATCTCTTAAACATTTGATTAATCATCTTGTCTAATACTATTTCTCTGTTTTGTTTAGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

mRNA sequence

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGAATGATATTGACATGATGTGAATCATATCTTGTAGAAAAAAATCTCCTTTTAAAGTTTATTATGTACTTAGTACTACTACCTAAGCACTCTTTGACCAAGTCTTGGAAGTGACATCAATATTAGACATGTAAATTGGGTGTAATTGCGTGGTTTTGGATGGTTTGTGTGATATGATAAGATTGTTACAGGAAAATATGCTATGATTTTGCTTCTCATTTGGTGTTCTTTGTAAATGTGCAACTGGTAAAGTACCAAGTTTTTGGAAAATATTTACTTTCTAGTTTCTACCAGGAAATATAGCCCTAATCTTGCTCTTAGGGCCAGGGCCAGG

Coding sequence (CDS)

ATGATTTCTAATTCTAGGGTTTATGTAATTGATTTATTGTGGGAGTGGGCGCAATGTATGGGCCTTTTGACAAATGTATTTGTGGTTCCAGAATATGATCTGAGGTGGTTAAGAGTTGGGCGGAAGATAAACAGACTGTGTATGGCTGAAATCTCATCACTTGACAAGAAGGTTTCTTTAGATCTGGCCAGGGAATTGCTCATTGCAATTTCCGAGTCTCTACCAGAAAATCTTCTCAATCCCGAGTCTCTACCGGATAAAAGTCTCAGTCCCAAGTCTATCGAGGAACCTACAAATGATCATGAGATTGCTTCAATGAAAAGTGCTGATAAAGACGAAGAGCTTAGGTCGGAACTGATCTCGATCTCGTATCTACCGTCACCGGACAAAGTTTCACTTCCAGCAAATGGTCATCTGTGA

Protein sequence

MISNSRVYVIDLLWEWAQCMGLLTNVFVVPEYDLRWLRVGRKINRLCMAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMKSADKDEELRSELISISYLPSPDKVSLPANGHL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23314.1	Spo23314.1	mRNA

Homology

[Close]

BLAST of Spo23314.1 vs. NCBI nr
Match: gi|902227339|gb|KNA20649.1| (hypothetical protein SOVF_050460 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 8.500e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92

[Close]

BLAST of Spo23314.1 vs. NCBI nr
Match: gi|870860339|gb|KMT11692.1| (hypothetical protein BVRB_5g106290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.6 bits (244), Expect = 9.100e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80

[Close]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP36_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050460 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.900e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK
Sbjct: 1   MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGHL 140
           SADKDEELRSELISISYLPSPDKVSLPANGHL
Sbjct: 61  SADKDEELRSELISISYLPSPDKVSLPANGHL 92

[Close]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDP5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106290 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.400e-18
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1

		  
Query: 48  MAEISSLDKKVSLDLARELLIAISESLPENLLNPESLPDKSLSPKSIEEPTNDHEIASMK 107
           MAE SSL KKVSLDLARELLIAISESLPEN+++ E          + EE TN H  AS+ 
Sbjct: 1   MAENSSLGKKVSLDLARELLIAISESLPENIISSE----------TGEEHTNGHHSASVT 60

Query: 108 SADKDEELRSELISISYLPSPDKVSLPANGH 139
           SADK ++LRSELISISY+P PDK++LPANGH
Sbjct: 61  SADKIDKLRSELISISYVP-PDKIALPANGH 80

The following BLAST results are available for this feature:

BLAST of Spo23314.1 vs. NCBI nr
BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
BLAST of Spo23314.1 vs. ExPASy Swiss-Prot
BLAST of Spo23314.1 vs. TAIR (Arabidopsis)

BLAST of Spo23314.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902227339\|gb\|KNA20649.1\|	8.5e-40	100.	hypothetical protein SOVF_0504...	[more]
gi\|870860339\|gb\|KMT11692.1\|	9.1e-18	65.9	hypothetical protein BVRB_5g10...	[more]

BLAST of Spo23314.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RP36_SPIOL	5.9e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CDP5_BETVU	6.4e-18	65.9	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo23314.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo23314.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35282	FAMILY NOT NAMED	coord: 39..135 score: 1.3
None	No IPR available	PANTHER	PTHR35282:SF2	F5D14.24 PROTEIN	coord: 39..135 score: 1.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006457	protein folding
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0042545	cell wall modification
biological_process	GO:0015969	guanosine tetraphosphate metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0071705	nitrogen compound transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0046786	viral replication complex formation and maintenance
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005618	cell wall
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016020	membrane
cellular_component	GO:0016459	myosin complex
cellular_component	GO:0009705	plant-type vacuole membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0008728	GTP diphosphokinase activity
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003774	motor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0016887	ATPase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17345	0.73	Barchart \| Table
Spo19069	0.73	Barchart \| Table
Spo19139	0.72	Barchart \| Table
Spo00314	0.69	Barchart \| Table
Spo22921	0.69	Barchart \| Table
Spo12656	0.68	Barchart \| Table
Spo02464	0.68	Barchart \| Table
Spo17044	0.68	Barchart \| Table
Spo21487	0.67	Barchart \| Table
Spo14655	0.67	Barchart \| Table
Spo17011	0.66	Barchart \| Table
Spo03083	0.66	Barchart \| Table
Spo04300	0.66	Barchart \| Table
Spo10086	0.66	Barchart \| Table
Spo11573	0.66	Barchart \| Table
Spo13485	0.66	Barchart \| Table
Spo14558	0.66	Barchart \| Table
Spo20418	0.66	Barchart \| Table
Spo21791	0.66	Barchart \| Table
Spo22272	0.66	Barchart \| Table
Spo25324	0.66	Barchart \| Table
Spo25796	0.66	Barchart \| Table
Spo13643	0.65	Barchart \| Table
Spo19812	0.65	Barchart \| Table
Spo26703	0.65	Barchart \| Table
Spo12922	0.65	Barchart \| Table
Spo01160	0.65	Barchart \| Table