Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAACTTCTTCTATTAAAACCCCATTATTATTTATTATTATTTTCATAACTATATAAATAAATAATACACTCTCTTCACTAACTTACTCTTACAATTTTCCCACCAACATAAACCACCAAAAATGGCCCCTGCATCATTCATCCCCATTTCAAACACAGTATGTGTTATGGATGCGTCCGGTTCACTCGGTTCGAGTCTCGTAAACCGGCTTCTTCAACGTGGTTACATTGTTCATGCCGCGGTTCAACCTCACGGTAATTAATTAGCAATGATTTTGATTAATTAGCTTAATTTTGATTATTAATTGAGGTTAATTTATTAATTCATTATGTTTTTTGTATGTTATTATAGGTGAAGTGAAGGGATTGGAGGGGTTAAGTGATGATGATGGAAAAGAAAGGTTGAAGATATTTGATTGTGATGTGTTTGATTATCATAGTATACTTGATGTTTTGAAGGGTTGCTCTGCTTTGTTCTATAACTTTGAACTTCCTTTTGATCAACCTGTCTATGATGTAAGTTTCATTTTTCCCACTTTTTGGTTTTTGTTAGCTTAATTAAGTACTATGATAAAAAAAGATTAATTTCCTTTAACAAAACTTATGACATAATAATTTCTTGATAAACAACCTAGATTAGTACTAAGTACTAATTTTAGTAAAACTACAAAATTTTCGATCTTTGCTCTTTCTATTATTAGCAAGTTACTTTTTTAATGAATAATTTAGGCCCGGTTCTCGCCTTATTTCAGGAAAAATAAATGCAGATAAGTTCAGGTAATAGAAGTTCATGAAAAAATAAGGATTATCTAAGTACAATTTATAACTAGGATTTTTTGGATAAAACCACCTTTTAAAGTTCAACTTTTTGAAATAACCACCTTATATATTTTTTTTTAAAAAAAACCACCTTAAACTTCCAAAGTTTAAGAAATCACCACCTTCTGTTAACTTCAGTCAAATGTTCCGTCAAATGTTCCGTTAACTTCCAAATATTTGGCCGTTGGATGTGGGGCCCACTGACGGAACATTTGACGAAAGTTAACAGAAGGTGGTGATTTCTTAAACTTTGGAAGTTTAAGGTGGTTTTTTTTTAAAAAAAACATATAAGGTGGTTATTTCAAAAAGTTGAACTTTAAAAGGTGGTTTTATCCAAAAAATCCTTATAACTAAAATAAGTTCTGATAAATTCAGTTAACTTCAGGAAAAAAAAAAAAGGTCAAAATTAGGTGAATAGAACGCACCATTAGATATAATATCCATAGACGAATTTGGCTTGATTGTAGGATTAATATTTATTGAATTGTGTTAAATATTATAATTATCCTTCATTTTAAAATTTACCCTTTGCCAGTCCAATATAGTACACATTTTTCCTTGGAATACATTTGAGAAAGTTAAAAAATTCTACTTATGAAATTTGAAAAATGGGATATTATTAAAAATTATTTGAACAATTGGAAAGAAAAAAAAAAGTCTAATAGACTACTCTGTATTTTTATTAAAAATAAGAAAAAATGAAGTATTCTATCATAAACAAAAAGAAACAGAGAAAGTAACTGTAACCGTTTTCGTCCATGTATTAAGCCACTTTTGGAAAAGAGTTGCAACTTTTGGAAGTAGATTAGGATGGTTACCTATCAATCTCCTTGAACTTAAATACAGCAAAATTGAAGCTGGATTTGAAATGCTTTAAATAAACAACAGCCGATTATTAGGTTGGAGAGATCGAACAATTAATTTGATTCAACCATATTCTTTACTTTCCTCCACATGATTATTACATCATTGTGTACATAATCAACCAATCACCGTCCATTTTAGCTACCTTTCTCATCACTCACATCGTGGCATGTGATGATGTGATCAAATTACAAACTTGATTAAAGCTAATTTAGTTGCAAACTTGCAATGGAGTGTGTGTTTTTGCAACCTTTTCTTTGCAAATGTTGAAAAGATCTAGCAAAAGTGTGGAACACACCTTATATTTCCTCCTTTAAAAAAAAAAAATTACACATAAGAAATTATATAGTTATTTGGGATTTTGTTAGATTCGTCCACATATATATTTTCAATTTTTTTTATAACTTTAACTAATGAATAATTAAAGTATTAATGACTAAAGTTATGCATTTACAAGTGTGAAATAACAAATGATACAATTATAAAAAATGAGTCATTGTAATTCACCCATTCGAAAGTATGGTGTCAGGTAATCCGCCTAAGTTTTCTTTCCTTATCAAAAAAAAAAAAAAAAAAACCCAGAGTAGGTATTTTTTGTGTGTGTTAGCACTCAGTTCACCCTTAGGGGCTAATCCGGATTCGGGGCGAGTTTTGGGTGGATAGGTTTCAGTCCCCTTCCAATTATTGTTGCGGGGGATCGAACACGGATCCTTCCTACCAAATTTAGTCTCAATCACCACTGAACCAACAAAAAATTGGTAAAATCAAAGTAAGTATAAGTAGTTGCATGACTAGCATCTGGCAGAGTTGTTTTTTCCACTAAATTTAAGATATGTTGTGACTCATAAGTAGCTTTCAAAATATACTTCGTACATAGTACTTTTAGAAATCCCTACTTTTCTAGTAGCACAAAAGCGTGAAAGAAGGTCTAGCTATCAGTCAAAATTGTTATGCACTAATCCAATATTCCTAGTTTGCATACAATTCAAGTAGACATTTGAAGACTTAAGAGTGGAAAATAGAAGTGTTAACTTTTCAATTAAGGCGTTAATGGTGTCCAAGTCCATATAATATCACATTAGTTTATGCCAACGAATGTGGAAATACATGGCTTGACACCAAATTGTGGAATTCTAGAAGTTAGGGATAATTGGATAACAAGATTGTGTCTCCTTAAAGAAAAGGAGTAGCAAAAGTTGTGGGTCTATTTGCTCATTTGTCCCCTTTATTAATTGGTGTTGGTCATTACTCATTAGGTCATGGTCCTTGCAAAAATTGCTTTTAAGTCAATGTAATAAAAATTTAATCTTTAAAATTATTGTGATTCAGGAATATACAGTGGATACGGAAGTAAGAGCGGCACACAATGTGTTAGAAGCGTGTGCGCAGATTGACACAATTGACAAAGTTGTTTTCACGTCATCGGCAGCAACCATTCTCTGGAGAGAAAATCGCCAGATGATGTCAGAACTCGACGAGAGGCACTGGAGTGATGTGGGATATTGTCGTAAATTTAAGGTAAGAATAGTAATTTGACTATGAAAATTCAAAGTCAAACTCTAAAATGTGACTAAAGACTAATTTGAATAAATGTTATTCTATAGTTATGGCATGCATTGTCAAAGACTTTAGCCGAGAAGAGTGCATGGGCATTGGCAATGGACCGTGGGATTAGCATGGTAACAATCAACGGTGGATTGTTGGTGTCTGATCTTTCCATAAGACACCCTTACTTAAAAGGAGCGGCTGAGATGTACCAAGATGGAGTATTAGTGACCGTTGATTTGAACTTCTTGGTTGATGCCCACATTTGTGTTTTTGAAGACATTTCAACTTATGGACGATACTTATGCTTTAATCACGTCGTTAATCGCCCTGAAAGCGCGATTAAGCTCGCTAAGATCTTGTTGCCCTCGGCACCCGTACAAGCCCAAAGGTACATGACCTATAAACCCGAGATTAATTAGTTGTTACATTATCACAATTATTTCAATATTATACGGAGTATTTAGGTATGGATTTGAATATTTACATAGTGTTTTTGTACGCACAGTTTTCAAGAGGACGACAAAACGATTCAACAAAGGATTACCAACAAGAAGTTGAAGAAATTGATCATGGAATTTGAATCTCATCATGATGATCAAGATATCAACTTATAATTCAAAGTTTTACTTACCTTGAAAGCATAACAAAATACCAAAGCGCAAGCTGCTCCATTCTTTCGTTAAATAAAAGAAGTGTCATACAATATGTTGTAAATAAATATCTATACATAATTAGATATAGATAAATTATAACATGCGGCGACAAGATGATGATGATAATTAGCAATATATTATAAAAGGAGGTATCTTTGTACGTACTTGTAGATTTTAACACATACGTATATGTAGTAGTAGTTTTCATATGATATAAATGCGCAATAGTTGTAATGTAATATATCACATGATAGTTATATGTTGTACGGGGTATTATATCGTTGTTTATGATACACAAAATTATGTTGAACAAATCTTTAACGGGTCGGCCAAACCCTTGTGAATCTTACCCATGCTCCATCAACATATTTCAACTAGCACGCTCAGGTTTTAGCGCAAATGTTAAGCAAAGAAATGTTGATGCAGTACCTGGAGTATTTGGTGAAGTTAGAGCTTTTGTAAACGCCATGAGATATTACGAGTGTAGTAACGCC CCAACTTCTTCTATTAAAACCCCATTATTATTTATTATTATTTTCATAACTATATAAATAAATAATACACTCTCTTCACTAACTTACTCTTACAATTTTCCCACCAACATAAACCACCAAAAATGGCCCCTGCATCATTCATCCCCATTTCAAACACAGTATGTGTTATGGATGCGTCCGGTTCACTCGGTTCGAGTCTCGTAAACCGGCTTCTTCAACGTGGTTACATTGTTCATGCCGCGGTTCAACCTCACGGTGAAGTGAAGGGATTGGAGGGGTTAAGTGATGATGATGGAAAAGAAAGGTTGAAGATATTTGATTGTGATGTGTTTGATTATCATAGTATACTTGATGTTTTGAAGGGTTGCTCTGCTTTGTTCTATAACTTTGAACTTCCTTTTGATCAACCTGTCTATGATGAATATACAGTGGATACGGAAGTAAGAGCGGCACACAATGTGTTAGAAGCGTGTGCGCAGATTGACACAATTGACAAAGTTGTTTTCACGTCATCGGCAGCAACCATTCTCTGGAGAGAAAATCGCCAGATGATGTCAGAACTCGACGAGAGGCACTGGAGTGATGTGGGATATTGTCGTAAATTTAAGTTATGGCATGCATTGTCAAAGACTTTAGCCGAGAAGAGTGCATGGGCATTGGCAATGGACCGTGGGATTAGCATGGTAACAATCAACGGTGGATTGTTGGTGTCTGATCTTTCCATAAGACACCCTTACTTAAAAGGAGCGGCTGAGATGTACCAAGATGGAGTATTAGTGACCGTTGATTTGAACTTCTTGGTTGATGCCCACATTTGTGTTTTTGAAGACATTTCAACTTATGGACGATACTTATGCTTTAATCACGTCGTTAATCGCCCTGAAAGCGCGATTAAGCTCGCTAAGATCTTGTTGCCCTCGGCACCCGTACAAGCCCAAAGTTTTCAAGAGGACGACAAAACGATTCAACAAAGGATTACCAACAAGAAGTTGAAGAAATTGATCATGGAATTTGAATCTCATCATGATGATCAAGATATCAACTTATAATTCAAAGTTTTACTTACCTTGAAAGCATAACAAAATACCAAAGCGCAAGCTGCTCCATTCTTTCGTTAAATAAAAGAAGTGTCATACAATATGTTGTAAATAAATATCTATACATAATTAGATATAGATAAATTATAACATGCGGCGACAAGATGATGATGATAATTAGCAATATATTATAAAAGGAGGTATCTTTGTACGTACTTGTAGATTTTAACACATACGTATATGTAGTAGTAGTTTTCATATGATATAAATGCGCAATAGTTGTAATGTAATATATCACATGATAGTTATATGTTGTACGGGGTATTATATCGTTGTTTATGATACACAAAATTATGTTGAACAAATCTTTAACGGGTCGGCCAAACCCTTGTGAATCTTACCCATGCTCCATCAACATATTTCAACTAGCACGCTCAGGTTTTAGCGCAAATGTTAAGCAAAGAAATGTTGATGCAGTACCTGGAGTATTTGGTGAAGTTAGAGCTTTTGTAAACGCCATGAGATATTACGAGTGTAGTAACGCC ATGGCCCCTGCATCATTCATCCCCATTTCAAACACAGTATGTGTTATGGATGCGTCCGGTTCACTCGGTTCGAGTCTCGTAAACCGGCTTCTTCAACGTGGTTACATTGTTCATGCCGCGGTTCAACCTCACGGTGAAGTGAAGGGATTGGAGGGGTTAAGTGATGATGATGGAAAAGAAAGGTTGAAGATATTTGATTGTGATGTGTTTGATTATCATAGTATACTTGATGTTTTGAAGGGTTGCTCTGCTTTGTTCTATAACTTTGAACTTCCTTTTGATCAACCTGTCTATGATGAATATACAGTGGATACGGAAGTAAGAGCGGCACACAATGTGTTAGAAGCGTGTGCGCAGATTGACACAATTGACAAAGTTGTTTTCACGTCATCGGCAGCAACCATTCTCTGGAGAGAAAATCGCCAGATGATGTCAGAACTCGACGAGAGGCACTGGAGTGATGTGGGATATTGTCGTAAATTTAAGTTATGGCATGCATTGTCAAAGACTTTAGCCGAGAAGAGTGCATGGGCATTGGCAATGGACCGTGGGATTAGCATGGTAACAATCAACGGTGGATTGTTGGTGTCTGATCTTTCCATAAGACACCCTTACTTAAAAGGAGCGGCTGAGATGTACCAAGATGGAGTATTAGTGACCGTTGATTTGAACTTCTTGGTTGATGCCCACATTTGTGTTTTTGAAGACATTTCAACTTATGGACGATACTTATGCTTTAATCACGTCGTTAATCGCCCTGAAAGCGCGATTAAGCTCGCTAAGATCTTGTTGCCCTCGGCACCCGTACAAGCCCAAAGTTTTCAAGAGGACGACAAAACGATTCAACAAAGGATTACCAACAAGAAGTTGAAGAAATTGATCATGGAATTTGAATCTCATCATGATGATCAAGATATCAACTTATAA MAPASFIPISNTVCVMDASGSLGSSLVNRLLQRGYIVHAAVQPHGEVKGLEGLSDDDGKERLKIFDCDVFDYHSILDVLKGCSALFYNFELPFDQPVYDEYTVDTEVRAAHNVLEACAQIDTIDKVVFTSSAATILWRENRQMMSELDERHWSDVGYCRKFKLWHALSKTLAEKSAWALAMDRGISMVTINGGLLVSDLSIRHPYLKGAAEMYQDGVLVTVDLNFLVDAHICVFEDISTYGRYLCFNHVVNRPESAIKLAKILLPSAPVQAQSFQEDDKTIQQRITNKKLKKLIMEFESHHDDQDINL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23280.1 vs. NCBI nr
Match: gi|902198573|gb|KNA13714.1| (hypothetical protein SOVF_113850 [Spinacia oleracea]) HSP 1 Score: 623.2 bits (1606), Expect = 2.400e-175 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1
BLAST of Spo23280.1 vs. NCBI nr
Match: gi|731367341|ref|XP_010695556.1| (PREDICTED: tetraketide alpha-pyrone reductase 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 521.5 bits (1342), Expect = 9.700e-145 Identity = 260/307 (84.69%), Postives = 283/307 (92.18%), Query Frame = 1
BLAST of Spo23280.1 vs. NCBI nr
Match: gi|743809634|ref|XP_011018544.1| (PREDICTED: cinnamoyl-CoA reductase 1-like [Populus euphratica]) HSP 1 Score: 418.3 bits (1074), Expect = 1.200e-113 Identity = 210/301 (69.77%), Postives = 247/301 (82.06%), Query Frame = 1
BLAST of Spo23280.1 vs. NCBI nr
Match: gi|629106629|gb|KCW71775.1| (hypothetical protein EUGRSUZ_E00270 [Eucalyptus grandis]) HSP 1 Score: 417.5 bits (1072), Expect = 2.000e-113 Identity = 207/302 (68.54%), Postives = 244/302 (80.79%), Query Frame = 1
BLAST of Spo23280.1 vs. NCBI nr
Match: gi|702335176|ref|XP_010055308.1| (PREDICTED: tetraketide alpha-pyrone reductase 1-like isoform X2 [Eucalyptus grandis]) HSP 1 Score: 417.5 bits (1072), Expect = 2.000e-113 Identity = 207/302 (68.54%), Postives = 244/302 (80.79%), Query Frame = 1
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R450_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113850 PE=3 SV=1) HSP 1 Score: 623.2 bits (1606), Expect = 1.600e-175 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9H1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g125610 PE=3 SV=1) HSP 1 Score: 521.5 bits (1342), Expect = 6.700e-145 Identity = 260/307 (84.69%), Postives = 283/307 (92.18%), Query Frame = 1
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Match: A0A059C1I6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00270 PE=4 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 1.400e-113 Identity = 207/302 (68.54%), Postives = 244/302 (80.79%), Query Frame = 1
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Match: B9MU38_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s02320g PE=3 SV=1) HSP 1 Score: 417.2 bits (1071), Expect = 1.800e-113 Identity = 207/301 (68.77%), Postives = 247/301 (82.06%), Query Frame = 1
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Match: A0A059C0L4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00270 PE=4 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 9.800e-112 Identity = 207/307 (67.43%), Postives = 244/307 (79.48%), Query Frame = 1
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Match: CCR1_ARATH (Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 6.900e-34 Identity = 97/302 (32.12%), Postives = 150/302 (49.67%), Query Frame = 1
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Match: CCR2_ARATH (Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.300e-32 Identity = 92/296 (31.08%), Postives = 148/296 (50.00%), Query Frame = 1
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Match: TKPR1_ARATH (Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.500e-32 Identity = 97/301 (32.23%), Postives = 152/301 (50.50%), Query Frame = 1
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 4.300e-28 Identity = 92/309 (29.77%), Postives = 160/309 (51.78%), Query Frame = 1
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.700e-27 Identity = 91/309 (29.45%), Postives = 160/309 (51.78%), Query Frame = 1
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Match: AT2G23910.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 256.9 bits (655), Expect = 1.600e-68 Identity = 134/290 (46.21%), Postives = 191/290 (65.86%), Query Frame = 1
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Match: AT4G30470.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 254.2 bits (648), Expect = 1.000e-67 Identity = 133/290 (45.86%), Postives = 189/290 (65.17%), Query Frame = 1
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Match: AT1G15950.1 (cinnamoyl coa reductase 1) HSP 1 Score: 146.0 bits (367), Expect = 3.900e-35 Identity = 97/302 (32.12%), Postives = 150/302 (49.67%), Query Frame = 1
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Match: AT1G80820.1 (cinnamoyl coa reductase) HSP 1 Score: 141.7 bits (356), Expect = 7.400e-34 Identity = 92/296 (31.08%), Postives = 148/296 (50.00%), Query Frame = 1
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Match: AT5G14700.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 139.8 bits (351), Expect = 2.800e-33 Identity = 100/304 (32.89%), Postives = 156/304 (51.32%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23280.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23280.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23280.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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