Spo11424 (gene)

Overview
NameSpo11424
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSeed dormancy control protein
Locationchr6 : 45662819 .. 45663562 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

mRNA sequence

ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

Coding sequence (CDS)

ATGATGAAAGCTCTAATCAACCGTTTCAAGAGTTCTCGCCCTTTCAAAGAATTCCACACAGATTGGATTAACACCCTAAAATCCAGCATCCTCCCTCTTCTCTCTCGTTCCCTCTCCTCCCCATCTCCAGACCATCATCTCCTTGCTACCCAAGTCGAACTCCTTCACACCCACTTCAATTCCTACTTCTCCGCCCTTGATCTTGCCTCTAACGACGACGTTTCACAGCTCCTCTTCCCTGACTGGCGAAATCCCCTCGAAAAGCCCTTTCTTTGGTTCGGCGATTTCCACCCTTATTCCTTCACTAATCTCCTCCGTTCTTTCCTCGAAGACGATGACGATGATAGTGACAATGATGCTAATTACGATTTTCTGGGTAATGTCTGGAAAAGTCGAGATGTTTCTGTGGGGCATATCGTCGAACAGGTGGAGTGCGGTTTGAGATTGATGGTTCCTTCAATTGTGGCGCGTTCTAGGGATGCTCAGGCTGCTTTGGTTGAAAAATTATCTGCTGGATGGAGACAAAATGGTGAGAATTTTGAGGTTGACGAGGTGGTCGGAGAATTGGTTGACAAGATGACTTGTGTTTTCTTGGATGCTAATAGGTTAAGAAGAAGTGTTCTTGCTGATATAATGGAGGCTTTGAATGTTTACCAAGCTGCGTTTTTTCTTCAAGGCCTTGCAAAATTCTATGTTGGGTTTTCGGATCCTAACTTGCTTGATCAGTTTAGCAACTCTACATAG

Protein sequence

MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLLDQFSNST
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11424.1Spo11424.1mRNA


Homology
[Close]
BLAST of Spo11424.1 vs. NCBI nr
Match: gi|902211254|gb|KNA16667.1| (hypothetical protein SOVF_087050 [Spinacia oleracea])

HSP 1 Score: 500.7 bits (1288), Expect = 1.400e-138
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 

		  

Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN
Sbjct: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120
           SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120

Query: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180
           NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF
Sbjct: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180

Query: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240
           EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL
Sbjct: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240

Query: 241 DQFSNST 248
           DQFSNST
Sbjct: 241 DQFSNST 247
[Close]
BLAST of Spo11424.1 vs. NCBI nr
Match: gi|870861247|gb|KMT12542.1| (hypothetical protein BVRB_5g097900 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 375.6 bits (963), Expect = 6.900e-101
Identity = 188/255 (73.73%), Postives = 211/255 (82.75%), Query Frame = 1 

		  

Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 180
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180

Query: 181 GWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFY 240
           GWR+ GENFEV EV+ ELVD MTCVF+DANRLRRSVLADIM ALNVYQAA F   LA+FY
Sbjct: 181 GWREKGENFEVGEVIHELVDDMTCVFMDANRLRRSVLADIMGALNVYQAAIFFHSLAQFY 240

Query: 241 VGFSDPNLLDQFSNS 247
           VGF D  LL QF+NS
Sbjct: 241 VGFWDNKLLTQFNNS 255
[Close]
BLAST of Spo11424.1 vs. NCBI nr
Match: gi|731330513|ref|XP_010676171.1| (PREDICTED: uncharacterized protein LOC104892053 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 275.0 bits (702), Expect = 1.300e-70
Identity = 135/186 (72.58%), Postives = 154/186 (82.80%), Query Frame = 1 

		  

Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 178
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180
[Close]
BLAST of Spo11424.1 vs. NCBI nr
Match: gi|1009157163|ref|XP_015896624.1| (PREDICTED: uncharacterized protein LOC107430301 [Ziziphus jujuba])

HSP 1 Score: 258.8 bits (660), Expect = 9.400e-66
Identity = 137/269 (50.93%), Postives = 183/269 (68.03%), Query Frame = 1 

		  

Query: 1   MMKA--LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTH 60
           M+KA  L  R K++RPFK+++TDW NTL +S+LPLL  S+         L+  VE++H+H
Sbjct: 1   MLKAVGLFGRKKTTRPFKDYYTDWFNTLNNSLLPLLRSSMDDAFLPQ--LSIHVEMIHSH 60

Query: 61  FNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN 120
           F SY+ ALDLA++DDV+QLL+PDWRN LEKPFLW GDFHPY FTNLLRSFL+D D++ D+
Sbjct: 61  FQSYYEALDLAASDDVTQLLYPDWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDENEDD 120

Query: 121 DANYDFLGN------------------VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRD 180
           D  +  LGN                   WK+    + + VEQ+ECGLRLMVP++VAR+RD
Sbjct: 121 DDGFGDLGNGECSESYELFDRPWHLVMAWKNPSKILMNRVEQIECGLRLMVPALVARARD 180

Query: 181 AQAALVEKLSAGWRQ-NGENFE-----VDEVVGELVDKMTCVFLDANRLRRSVLADIMEA 240
           AQ   +E L+  W + +G N E     V E +   +D++  VFLDANRLRRSV+++I+ A
Sbjct: 181 AQMVFIESLAKNWVECDGGNKEAAKAVVAEPMEAQMDEVVSVFLDANRLRRSVISEIIGA 240

Query: 241 LNVYQAAFFLQGLAKFYVGFSDPNLLDQF 244
            NVYQAA FL+GL++F VGF D  LL +F
Sbjct: 241 ANVYQAALFLEGLSQFLVGFKDSELLGEF 267
[Close]
BLAST of Spo11424.1 vs. NCBI nr
Match: gi|731438343|ref|XP_010646544.1| (PREDICTED: uncharacterized protein LOC100250621 [Vitis vinifera])

HSP 1 Score: 250.0 bits (637), Expect = 4.400e-63
Identity = 128/261 (49.04%), Postives = 179/261 (68.58%), Query Frame = 1 

		  

Query: 4   ALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYF 63
           AL +R K+ RPFK+++  WI+ L +++LPLL R++ S SP +  L+T VE++H HF +Y+
Sbjct: 6   ALFSRKKACRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSN--LSTHVEMVHHHFQAYY 65

Query: 64  SALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN----- 123
            ALDLA+++DV+QLL+P+WRN LEKPFLW GDFHPY FTNLLRSFL+D DDD D+     
Sbjct: 66  EALDLAASNDVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEV 125

Query: 124 -------DANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 183
                  D  +  L   WK+   ++   +EQ+EC LRLMVP++VAR R+AQ  L ++++ 
Sbjct: 126 GETCSFCDTPWQIL-MAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVAT 185

Query: 184 GW-----RQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQG 243
            W     ++ G    + + V   +D+M  VFLDANRLR+SVLA+I+   NVYQAA FL+G
Sbjct: 186 DWGLFQGKREGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEG 245

Query: 244 LAKFYVGFSDPNLLDQFSNST 248
           LA+F+VGF D  LL +F   T
Sbjct: 246 LAQFFVGFRDHELLSEFERCT 263
[Close]
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_087050 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 9.900e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1 

		  

Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN
Sbjct: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120
           SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDA 120

Query: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180
           NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF
Sbjct: 121 NYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGWRQNGENF 180

Query: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240
           EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL
Sbjct: 181 EVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPNLL 240

Query: 241 DQFSNST 248
           DQFSNST
Sbjct: 241 DQFSNST 247
[Close]
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CG88_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g097900 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.800e-101
Identity = 188/255 (73.73%), Postives = 211/255 (82.75%), Query Frame = 1 

		  

Query: 1   MMKALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFN 60
           MMK+L+NRFK+S  FK+F+TDWI TLKS++LPLL+ SLSS SPD  LL+TQ++LLH HFN
Sbjct: 1   MMKSLLNRFKNSHSFKDFYTDWIKTLKSTLLPLLTNSLSSSSPDPLLLSTQLDLLHKHFN 60

Query: 61  SYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDS---- 120
           SYFSALDLASNDDVSQLLFPDWRNP+EKPFLW GDFHPY FTNLLRSF +DDDDD     
Sbjct: 61  SYFSALDLASNDDVSQLLFPDWRNPIEKPFLWLGDFHPYIFTNLLRSFFDDDDDDDVDSD 120

Query: 121 --DNDANYDFLG---NVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSA 180
             D+   +  +G   NVWK  DVS+GHIVEQ+ECGLRLMVPSI ARSRDAQAALVEKL  
Sbjct: 121 ECDDGKRFHSMGKAWNVWKCPDVSLGHIVEQMECGLRLMVPSIAARSRDAQAALVEKLGV 180

Query: 181 GWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFY 240
           GWR+ GENFEV EV+ ELVD MTCVF+DANRLRRSVLADIM ALNVYQAA F   LA+FY
Sbjct: 181 GWREKGENFEVGEVIHELVDDMTCVFMDANRLRRSVLADIMGALNVYQAAIFFHSLAQFY 240

Query: 241 VGFSDPNLLDQFSNS 247
           VGF D  LL QF+NS
Sbjct: 241 VGFWDNKLLTQFNNS 255
[Close]
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: A5AYG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000736 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.200e-62
Identity = 127/260 (48.85%), Postives = 178/260 (68.46%), Query Frame = 1 

		  

Query: 5   LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYFS 64
           L +R K+ RPFK+++  WI+ L +++LPLL R++ S SP +  L+T VE++H HF +Y+ 
Sbjct: 78  LFSRKKACRPFKDYYAQWIHALNNTLLPLLRRAMLSSSPSN--LSTHVEMVHHHFQAYYE 137

Query: 65  ALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN------ 124
           ALDLA+++DV+QLL+P+WRN LEKPFLW GDFHPY FTNLLRSFL+D DDD D+      
Sbjct: 138 ALDLAASNDVAQLLYPEWRNSLEKPFLWLGDFHPYLFTNLLRSFLDDGDDDDDDGDHEVG 197

Query: 125 ------DANYDFLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAG 184
                 D  +  L   WK+   ++   +EQ+EC LRLMVP++VAR R+AQ  L ++++  
Sbjct: 198 ETCSFCDTPWQIL-MAWKNPSETLMARIEQIECALRLMVPALVARVRNAQLGLFDRVATD 257

Query: 185 W-----RQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGL 244
           W     ++ G    + + V   +D+M  VFLDANRLR+SVLA+I+   NVYQAA FL+GL
Sbjct: 258 WGLFQGKREGAKAVIGKAVMGQMDEMLGVFLDANRLRKSVLAEIIGETNVYQAALFLEGL 317

Query: 245 AKFYVGFSDPNLLDQFSNST 248
           A+F+VGF D  LL +F   T
Sbjct: 318 AQFFVGFRDHELLSEFERCT 334
[Close]
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: M5WDC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014749mg PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.500e-62
Identity = 129/263 (49.05%), Postives = 171/263 (65.02%), Query Frame = 1 

		  

Query: 1   MMKA--LINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTH 60
           M+KA  L  R K++R FK+F+ +W NTLK+++LP L  S+S        L+TQ+E LH H
Sbjct: 1   MLKAVGLFGRKKTTRQFKDFYAEWFNTLKNTLLPSLRSSMSESDSSLTRLSTQMEALHLH 60

Query: 61  FNSYFSALDLASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDN 120
           F SY+ ALDLA+ +DV+QLL P WRNPLEKPFL+ GDFHPY FTNLLRSFL  +D DSDN
Sbjct: 61  FQSYYDALDLAAQNDVAQLLCPTWRNPLEKPFLFLGDFHPYLFTNLLRSFLTQNDTDSDN 120

Query: 121 DANYD------------------FLGNVWKSRDVSVGHIVEQVECGLRLMVPSIVARSRD 180
           + + D                   +   W+    ++   VEQVE GLRLMVP++ AR+RD
Sbjct: 121 ENDGDSMVVQCDRGDRDRFDRPWHIATAWRRPSYNLMERVEQVERGLRLMVPALAARARD 180

Query: 181 AQAALVEKLSAGWRQNGENFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQA 240
           AQ   +E+++  W        V+E + E  ++M  VF+DANRLR+SVL +IM A +V+Q 
Sbjct: 181 AQVGFLERVARNWAFGTHKAAVEEAMAEQNEEMVGVFVDANRLRKSVLVEIMGATSVFQG 240

Query: 241 AFFLQGLAKFYVGFSDPNLLDQF 244
           A FL+GLA+F VGF DP LL QF
Sbjct: 241 ALFLEGLAQFLVGFRDPELLAQF 263
[Close]
BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Match: K4CNR4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.500e-59
Identity = 126/245 (51.43%), Postives = 169/245 (68.98%), Query Frame = 1 

		  

Query: 10  KSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHH-LLATQVELLHTHFNSYFSALDL 69
           KSS+PFK+++  W  TLK+ +LP L  ++SS +     LLA+ VE++H HF  Y+ ALDL
Sbjct: 12  KSSKPFKDYYDGWFKTLKNVLLPQLRHAMSSSATSGPILLASHVEVMHRHFLKYYEALDL 71

Query: 70  ASNDDVSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLEDDDDDSDNDANYDFLGN- 129
           A+ +DVSQ+L+PDWRNP EKPFLW GD HPY FTNLLRSF+ D + + D+D  +D L N 
Sbjct: 72  AAANDVSQVLYPDWRNPFEKPFLWLGDLHPYLFTNLLRSFIGDSESEIDSDI-FDKLQNW 131

Query: 130 ----VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGW-RQNGENFEV 189
                WKS    +   V+Q+ECGLRLMVP++ AR+RDAQA  VEK++  W +  G   E+
Sbjct: 132 HVVMAWKSPSRKLTTGVDQIECGLRLMVPALAARARDAQAKFVEKMAVEWGKCEGRKQEM 191

Query: 190 DEVVGEL----VDKMTCVFLDANRLRRSVLADIMEALNVYQAAFFLQGLAKFYVGFSDPN 244
             VVGE     ++++  VF+DANRLRRSVL+DI+   +V QAA FL+ LA+F VGF +  
Sbjct: 192 KGVVGESSAAEMEELVGVFVDANRLRRSVLSDILNVTDVNQAAVFLEALAQFLVGFRNRE 251
[Close]
BLAST of Spo11424.1 vs. TAIR (Arabidopsis)
Match: AT4G22600.1 (unknown protein)

HSP 1 Score: 178.7 bits (452), Expect = 4.400e-45
Identity = 101/264 (38.26%), Postives = 150/264 (56.82%), Query Frame = 1 

		  

Query: 4   ALINRFKSSRPFKEFHTDWINTLKSSILPLLSRSLSSPSPDHHLLATQVELLHTHFNSYF 63
           +  +R K SR F +F+ DW  TL  + LPLL +SLSS +    +L++ V+L+  H   Y+
Sbjct: 4   SFFSRKKPSRRFNDFYEDWSKTLTENCLPLLRQSLSSAA-SASVLSSNVDLVLRHLVLYY 63

Query: 64  SALDLASNDD-VSQLLFPDWRNPLEKPFLWFGDFHPYSFTNLLRSFLE---DDDDDSDND 123
             LDLA++ + +  LLFP WRN LE PFL+ GD HPY  TNLLRSF++    D DD D +
Sbjct: 64  ETLDLAADHNTIPYLLFPSWRNSLETPFLFLGDIHPYLLTNLLRSFIDRENQDSDDEDEE 123

Query: 124 ANYDFLGN------VWKSRDVSVGHIVEQVECGLRLMVPSIVARSRDAQAALVEKLSAGW 183
            + D +         WK     +   ++Q+EC +RLMVP ++ R R  Q + V ++S  W
Sbjct: 124 TSLDLVNQPLKMTMAWKDPSDELVKRIDQIECTMRLMVPGLMDRMRKTQRSFVARVSESW 183

Query: 184 RQNGE--------------NFEVDEVVGELVDKMTCVFLDANRLRRSVLADIMEALNVYQ 243
             + +              +  VDE     ++++  +F+DANRLR+SV+ DI+ A + +Q
Sbjct: 184 VSSYQVGKKKKLTATVATASTSVDEAAKIEMEELVSIFVDANRLRKSVIMDIVGATSEHQ 243
The following BLAST results are available for this feature:
BLAST of Spo11424.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902211254|gb|KNA16667.1|1.4e-138100.hypothetical protein SOVF_0870... [more]
gi|870861247|gb|KMT12542.1|6.9e-10173.7hypothetical protein BVRB_5g09... [more]
gi|731330513|ref|XP_010676171.1|1.3e-7072.5PREDICTED: uncharacterized pro... [more]
gi|1009157163|ref|XP_015896624.1|9.4e-6650.9PREDICTED: uncharacterized pro... [more]
gi|731438343|ref|XP_010646544.1|4.4e-6349.0PREDICTED: uncharacterized pro... [more]
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BLAST of Spo11424.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCY4_SPIOL9.9e-139100.Uncharacterized protein OS=Spi... [more]
A0A0J8CG88_BETVU4.8e-10173.7Uncharacterized protein OS=Bet... [more]
A5AYG1_VITVI1.2e-6248.8Putative uncharacterized prote... [more]
M5WDC1_PRUPE7.5e-6249.0Uncharacterized protein OS=Pru... [more]
K4CNR4_SOLLC4.5e-5951.4Uncharacterized protein OS=Sol... [more]
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BLAST of Spo11424.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11424.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G22600.14.4e-4538.2unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025422Transcription factor TGA like domainPFAMPF14144DOG1coord: 32..107
score: 4.3
NoneNo IPR availablePANTHERPTHR22952CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATEDcoord: 37..147
score: 1.2E-49coord: 166..234
score: 1.2
NoneNo IPR availablePANTHERPTHR22952:SF17CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN Bcoord: 37..147
score: 1.2E-49coord: 166..234
score: 1.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0009409 response to cold
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006396 RNA processing
biological_process GO:0031167 rRNA methylation
biological_process GO:0009658 chloroplast organization
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0040007 growth
biological_process GO:0009451 RNA modification
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0010048 vernalization response
biological_process GO:0044237 cellular metabolic process
biological_process GO:0097034 obsolete mitochondrial respiratory chain complex IV biogenesis
biological_process GO:0097031 obsolete mitochondrial respiratory chain complex I biogenesis
biological_process GO:0009987 cellular process
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0006950 response to stress
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006397 mRNA processing
biological_process GO:0000373 Group II intron splicing
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0010319 stromule
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0005488 binding
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008266 poly(U) RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo043770.77Barchart | Table
Spo138350.77Barchart | Table
Spo057330.76Barchart | Table
Spo194740.74Barchart | Table
Spo209520.73Barchart | Table
Spo237670.72Barchart | Table
Spo215010.72Barchart | Table
Spo059690.72Barchart | Table
Spo168060.71Barchart | Table
Spo074900.71Barchart | Table
Spo268570.71Barchart | Table
Spo008060.71Barchart | Table
Spo079280.71Barchart | Table
Spo022210.71Barchart | Table
Spo267270.70Barchart | Table
Spo050780.70Barchart | Table
Spo182960.70Barchart | Table
Spo210710.70Barchart | Table
Spo135660.69Barchart | Table
Spo272910.69Barchart | Table
Spo004000.69Barchart | Table
Spo148570.69Barchart | Table
Spo060610.68Barchart | Table
Spo028160.68Barchart | Table
Spo030270.68Barchart | Table
Spo133740.68Barchart | Table
Spo147470.68Barchart | Table
Spo267360.68Barchart | Table
Spo161060.67Barchart | Table
Spo168920.67Barchart | Table
Spo181500.67Barchart | Table
Spo088790.67Barchart | Table
Spo085990.67Barchart | Table
Spo220060.67Barchart | Table
Spo245330.67Barchart | Table
Spo247870.67Barchart | Table
Spo254510.67Barchart | Table
Spo259070.67Barchart | Table
Spo262350.67Barchart | Table
Spo012720.67Barchart | Table
Spo165680.67Barchart | Table
Spo246790.66Barchart | Table
Spo227150.66Barchart | Table
Spo057920.66Barchart | Table
Spo215310.66Barchart | Table
Spo030570.66Barchart | Table
Spo221820.66Barchart | Table
Spo168840.66Barchart | Table
Spo056800.66Barchart | Table
Spo225430.66Barchart | Table
Spo226660.66Barchart | Table
Spo184780.66Barchart | Table
Spo123770.66Barchart | Table
Spo198590.66Barchart | Table
Spo219390.65Barchart | Table
Spo231330.65Barchart | Table
Spo035050.65Barchart | Table
Spo145230.65Barchart | Table
Spo261950.65Barchart | Table