Spo20326 (gene) | SpinachBase

Overview


Name	Spo20326
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	F-box protein SKIP31
Location	SpoScf_00060 : 211917 .. 212384 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA

mRNA sequence

ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA

Coding sequence (CDS)

ATGGAGGCACACAGAGCAGCAATGATGTCCGGTTCCTCAAATGTTGTCTTTATGTCAAGTATTCTGGGTCAGGATGGGACAAACCCGGGTCACAAGTGTGATTGGAAATGTCAAAACGAGCACGTCTGTGGAAATATGTTCCGATGCAGGCTTACCGGACAGACCCATATTTGTGACAAAAACTGTAACCAGCGAATTCTGTACGGTAATCACAACTCACTGTGCAGAGTCAGTGGACAGATTTTCCCACTTACACCTACGGAGCAGCAAGCAACTAGAGGTGTTCGTAAGAAGTTTGAAGCCGAGGCTTCCTCTTCCGAGACCTGTTCTTTCAAGCGTCGGCGTGATTCAAATTTACATCCTTCGCCTTTCGAGAGATCATTTTCTGCTGTCAGCCCTATCTGCAGTCAAGTTGGAGATGGAATGCTGAGATATGGCTATTTATTGTGTTCTATGAAGGTGTCTTAA

Protein sequence

MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20326.1	Spo20326.1	mRNA

Homology

[Close]

BLAST of Spo20326.1 vs. NCBI nr
Match: gi|902146699|gb|KNA05092.1| (hypothetical protein SOVF_193580 [Spinacia oleracea])

HSP 1 Score: 327.4 bits (838), Expect = 1.300e-86
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60
           MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK
Sbjct: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60

Query: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120
           NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH
Sbjct: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120

Query: 121 PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS 156
           PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS
Sbjct: 121 PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS 155

[Close]

BLAST of Spo20326.1 vs. NCBI nr
Match: gi|902233960|gb|KNA23274.1| (hypothetical protein SOVF_026460 [Spinacia oleracea])

HSP 1 Score: 297.7 bits (761), Expect = 1.100e-77
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1

		  
Query: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60
           MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK
Sbjct: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60

Query: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120
           NCNQRILYGNHNSLCRVSGQIFPLTPTEQQA RGVR+KFEAEASSSETCSFKRRRDSNLH
Sbjct: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQAARGVRRKFEAEASSSETCSFKRRRDSNLH 120

Query: 121 PSPFERSFSAVSPICSQVGDGM 143
           PSPFERSFSAVSPICSQVGDGM
Sbjct: 121 PSPFERSFSAVSPICSQVGDGM 142

[Close]

BLAST of Spo20326.1 vs. NCBI nr
Match: gi|870865374|gb|KMT16430.1| (hypothetical protein BVRB_3g050560 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 285.8 bits (730), Expect = 4.500e-74
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 1

		  
Query: 8   MMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRIL 67
           MM+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDKNCNQRIL
Sbjct: 1   MMTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDKNCNQRIL 60

Query: 68  YGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERS 127
           YGNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLHPSPFERS
Sbjct: 61  YGNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLHPSPFERS 120

Query: 128 FSAVSPICSQVGDGMLRYGYLLCSMKVS 156
           FSAVSPICSQVGD M RYGYL CSMKVS
Sbjct: 121 FSAVSPICSQVGDEMQRYGYLWCSMKVS 148

[Close]

BLAST of Spo20326.1 vs. NCBI nr
Match: gi|731321298|ref|XP_010671276.1| (PREDICTED: uncharacterized protein LOC104888109 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 280.4 bits (716), Expect = 1.900e-72
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1

		  
Query: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60
           MEAHRAAMM+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDK
Sbjct: 1   MEAHRAAMMTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDK 60

Query: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120
           NCNQRILYGNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLH
Sbjct: 61  NCNQRILYGNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLH 120

Query: 121 PSPFERSFSAVSPICSQVGDGM 143
           PSPFERSFSAVSPICSQVGDGM
Sbjct: 121 PSPFERSFSAVSPICSQVGDGM 142

[Close]

BLAST of Spo20326.1 vs. NCBI nr
Match: gi|870865375|gb|KMT16431.1| (hypothetical protein BVRB_3g050560 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 266.9 bits (681), Expect = 2.200e-68
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1

		  
Query: 8   MMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRIL 67
           MM+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDKNCNQRIL
Sbjct: 1   MMTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDKNCNQRIL 60

Query: 68  YGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERS 127
           YGNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLHPSPFERS
Sbjct: 61  YGNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLHPSPFERS 120

Query: 128 FSAVSPICSQVGDGM 143
           FSAVSPICSQVGDGM
Sbjct: 121 FSAVSPICSQVGDGM 135

[Close]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCU7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193580 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 9.400e-87
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

		  
Query: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60
           MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK
Sbjct: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60

Query: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120
           NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH
Sbjct: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120

Query: 121 PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS 156
           PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS
Sbjct: 121 PSPFERSFSAVSPICSQVGDGMLRYGYLLCSMKVS 155

[Close]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWI5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026460 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.000e-78
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1

		  
Query: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60
           MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK
Sbjct: 1   MEAHRAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDK 60

Query: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLH 120
           NCNQRILYGNHNSLCRVSGQIFPLTPTEQQA RGVR+KFEAEASSSETCSFKRRRDSNLH
Sbjct: 61  NCNQRILYGNHNSLCRVSGQIFPLTPTEQQAARGVRRKFEAEASSSETCSFKRRRDSNLH 120

Query: 121 PSPFERSFSAVSPICSQVGDGM 143
           PSPFERSFSAVSPICSQVGDGM
Sbjct: 121 PSPFERSFSAVSPICSQVGDGM 142

[Close]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRM5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050560 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.100e-74
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 1

		  
Query: 8   MMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRIL 67
           MM+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDKNCNQRIL
Sbjct: 1   MMTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDKNCNQRIL 60

Query: 68  YGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERS 127
           YGNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLHPSPFERS
Sbjct: 61  YGNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLHPSPFERS 120

Query: 128 FSAVSPICSQVGDGMLRYGYLLCSMKVS 156
           FSAVSPICSQVGD M RYGYL CSMKVS
Sbjct: 121 FSAVSPICSQVGDEMQRYGYLWCSMKVS 148

[Close]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FKI9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050560 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.500e-68
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1

		  
Query: 8   MMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRIL 67
           MM+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDKNCNQRIL
Sbjct: 1   MMTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDKNCNQRIL 60

Query: 68  YGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERS 127
           YGNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLHPSPFERS
Sbjct: 61  YGNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLHPSPFERS 120

Query: 128 FSAVSPICSQVGDGM 143
           FSAVSPICSQVGDGM
Sbjct: 121 FSAVSPICSQVGDGM 135

[Close]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Match: K4Q0G5_BETVU (Uncharacterized protein OS=Beta vulgaris PE=4 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 2.000e-60
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 1

		  
Query: 9   MSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQRILY 68
           M+GSSNVVFMSSILGQDG NPGHKCDWKCQNEHVCGNM+RCRLTG THICDKNCNQRILY
Sbjct: 1   MTGSSNVVFMSSILGQDGPNPGHKCDWKCQNEHVCGNMYRCRLTGLTHICDKNCNQRILY 60

Query: 69  GNHNSLCRVSGQIFPLTPTEQQATRGVRKKFEAEASSSETCSFKRRRDSNLHPSPFERSF 128
           GNHNSLCRVSGQ+FPLTP EQQA RGVR+KFEAEA  SE+CSFKRRRD+NLHPSPFERSF
Sbjct: 61  GNHNSLCRVSGQMFPLTPMEQQAARGVRRKFEAEACPSESCSFKRRRDANLHPSPFERSF 120

Query: 129 SA 131
           SA
Sbjct: 121 SA 122

[Close]

BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Match: AT5G24610.1 (unknown protein)

HSP 1 Score: 197.6 bits (501), Expect = 5.700e-51
Identity = 92/140 (65.71%), Postives = 117/140 (83.57%), Query Frame = 1

		  
Query: 5   RAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQ 64
           ++ M+  S+NV+++S+ILG+D    GHKCDWKC+NE+VCGNM+RC+LTG TH+CDKNCNQ
Sbjct: 6   KSPMVVTSANVIYLSAILGRDCD--GHKCDWKCENENVCGNMYRCKLTGLTHVCDKNCNQ 65

Query: 65  RILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKFE-AEASSSETCSFK-RRRDSNLHPS 124
           RILY NH+SLCR SG+IFPL+  E+QA +GVR+K + AE+  SE+CSFK RRRD+  H S
Sbjct: 66  RILYDNHSSLCRASGRIFPLSSVEEQAVKGVRRKLDAAESHPSESCSFKRRRRDAQFHAS 125

Query: 125 PFERSFSAVSPICSQVGDGM 143
           PFERSF+AVSPICS  GDGM
Sbjct: 126 PFERSFTAVSPICSPAGDGM 143

[Close]

BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Match: AT3G49550.1 (unknown protein)

HSP 1 Score: 194.1 bits (492), Expect = 6.300e-50
Identity = 89/141 (63.12%), Postives = 115/141 (81.56%), Query Frame = 1

		  
Query: 5   RAAMMSGSSNVVFMSSILGQDGTNPGHKCDWKCQNEHVCGNMFRCRLTGQTHICDKNCNQ 64
           ++ ++ GS+NV+++S+ILG +G  P HKCDWKC+NE+VCGNM+RC+LTG TH+CDKNCNQ
Sbjct: 6   KSHVVVGSANVIYLSAILGHEG--PNHKCDWKCENENVCGNMYRCKLTGLTHVCDKNCNQ 65

Query: 65  RILYGNHNSLCRVSGQIFPLTPTEQQATRGVRKKF--EAEASSSETCSFKRRRDSNLHPS 124
           RILY NHNSLCR SG+IFPL+  E+QA +GVR+K   E++   SE+C  +RRRD+  H S
Sbjct: 66  RILYDNHNSLCRASGRIFPLSLVEEQAVKGVRRKLDDESQQQPSESCVKRRRRDAQFHSS 125

Query: 125 PFERSFSAVSPICSQV-GDGM 143
           PFERSF+AVSP CSQ  GDGM
Sbjct: 126 PFERSFAAVSPFCSQAGGDGM 144

The following BLAST results are available for this feature:

BLAST of Spo20326.1 vs. NCBI nr
BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
BLAST of Spo20326.1 vs. ExPASy Swiss-Prot
BLAST of Spo20326.1 vs. TAIR (Arabidopsis)

BLAST of Spo20326.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902146699\|gb\|KNA05092.1\|	1.3e-86	100.	hypothetical protein SOVF_1935...	[more]
gi\|902233960\|gb\|KNA23274.1\|	1.1e-77	98.5	hypothetical protein SOVF_0264...	[more]
gi\|870865374\|gb\|KMT16430.1\|	4.5e-74	89.8	hypothetical protein BVRB_3g05...	[more]
gi\|731321298\|ref\|XP_010671276.1\|	1.9e-72	91.5	PREDICTED: uncharacterized pro...	[more]
gi\|870865375\|gb\|KMT16431.1\|	2.2e-68	91.1	hypothetical protein BVRB_3g05...	[more]

BLAST of Spo20326.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QCU7_SPIOL	9.4e-87	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RWI5_SPIOL	8.0e-78	98.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CRM5_BETVU	3.1e-74	89.8	Uncharacterized protein OS=Bet...	[more]
A0A0J8FKI9_BETVU	1.5e-68	91.1	Uncharacterized protein OS=Bet...	[more]
K4Q0G5_BETVU	2.0e-60	90.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo20326.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20326.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G24610.1	5.7e-51	65.7	unknown protein	[more]
AT3G49550.1	6.3e-50	63.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36372	FAMILY NOT NAMED	coord: 2..145 score: 4.0
None	No IPR available	PANTHER	PTHR36372:SF1	SUBFAMILY NOT NAMED	coord: 2..145 score: 4.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0000741	karyogamy
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0046685	response to arsenic-containing substance
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006950	response to stress
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0010167	response to nitrate
biological_process	GO:0009408	response to heat
biological_process	GO:0015706	nitrate transport
biological_process	GO:0006826	iron ion transport
biological_process	GO:0010106	cellular response to iron ion starvation
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0050896	response to stimulus
biological_process	GO:0048507	meristem development
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0009723	response to ethylene
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0009684	indoleacetic acid biosynthetic process
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0009611	response to wounding
biological_process	GO:0006569	tryptophan catabolic process
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006457	protein folding
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0046786	viral replication complex formation and maintenance
biological_process	GO:0006914	autophagy
biological_process	GO:0042176	regulation of protein catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0042128	nitrate assimilation
biological_process	GO:0016310	phosphorylation
biological_process	GO:0071215	cellular response to abscisic acid stimulus
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006281	DNA repair
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0051301	cell division
biological_process	GO:0048825	cotyledon development
biological_process	GO:0009880	embryonic pattern specification
biological_process	GO:0032264	IMP salvage
biological_process	GO:0010072	primary shoot apical meristem specification
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0019915	lipid storage
biological_process	GO:0016571	histone methylation
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0007155	cell adhesion
biological_process	GO:0045010	actin nucleation
biological_process	GO:0006396	RNA processing
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0006833	water transport
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0010093	specification of floral organ identity
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0006102	isocitrate metabolic process
biological_process	GO:0006739	NADP metabolic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0006508	proteolysis
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009845	seed germination
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007030	Golgi organization
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0051049	regulation of transport
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0050826	response to freezing
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009705	plant-type vacuole membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031307	integral component of mitochondrial outer membrane
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0017177	glucosidase II complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0016020	membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0044464	cell part
cellular_component	GO:0031012	extracellular matrix
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0043424	protein histidine kinase binding
molecular_function	GO:0003876	AMP deaminase activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0004197	cysteine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0030234	enzyme regulator activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0016629	12-oxophytodienoate reductase activity
molecular_function	GO:0004558	alpha-1,4-glucosidase activity
molecular_function	GO:0008324	cation transmembrane transporter activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016174	NAD(P)H oxidase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0015238	drug transmembrane transporter activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0043023	ribosomal large subunit binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004450	isocitrate dehydrogenase (NADP+) activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0032450	maltose alpha-glucosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016874	ligase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23690	0.77	Barchart \| Table
Spo22323	0.77	Barchart \| Table
Spo12403	0.77	Barchart \| Table
Spo08124	0.76	Barchart \| Table
Spo23850	0.75	Barchart \| Table
Spo08785	0.74	Barchart \| Table
Spo26544	0.74	Barchart \| Table
Spo23292	0.73	Barchart \| Table
Spo03739	0.73	Barchart \| Table
Spo22023	0.73	Barchart \| Table
Spo09619	0.73	Barchart \| Table
Spo24327	0.72	Barchart \| Table
Spo00637	0.72	Barchart \| Table
Spo24503	0.72	Barchart \| Table
Spo18052	0.72	Barchart \| Table
Spo05908	0.72	Barchart \| Table
Spo18986	0.71	Barchart \| Table
Spo18907	0.71	Barchart \| Table
Spo01314	0.71	Barchart \| Table
Spo03105	0.71	Barchart \| Table
Spo03527	0.71	Barchart \| Table
Spo15007	0.71	Barchart \| Table
Spo08756	0.70	Barchart \| Table
Spo10269	0.70	Barchart \| Table
Spo26851	0.70	Barchart \| Table
Spo25099	0.70	Barchart \| Table
Spo02239	0.70	Barchart \| Table
Spo16460	0.70	Barchart \| Table
Spo06343	0.69	Barchart \| Table
Spo26850	0.69	Barchart \| Table
Spo25748	0.69	Barchart \| Table
Spo11195	0.69	Barchart \| Table
Spo18449	0.69	Barchart \| Table
Spo18947	0.69	Barchart \| Table
Spo24635	0.68	Barchart \| Table
Spo01308	0.68	Barchart \| Table
Spo04430	0.68	Barchart \| Table
Spo05230	0.68	Barchart \| Table
Spo15388	0.68	Barchart \| Table
Spo19773	0.68	Barchart \| Table
Spo21279	0.68	Barchart \| Table
Spo21280	0.68	Barchart \| Table
Spo22712	0.68	Barchart \| Table
Spo24931	0.68	Barchart \| Table
Spo25886	0.68	Barchart \| Table
Spo01933	0.67	Barchart \| Table
Spo18740	0.67	Barchart \| Table
Spo03473	0.67	Barchart \| Table
Spo20184	0.67	Barchart \| Table
Spo24453	0.67	Barchart \| Table
Spo11603	0.67	Barchart \| Table
Spo04242	0.67	Barchart \| Table
Spo19752	0.66	Barchart \| Table
Spo20053	0.66	Barchart \| Table
Spo25757	0.66	Barchart \| Table
Spo01088	0.66	Barchart \| Table
Spo21542	0.66	Barchart \| Table
Spo14380	0.66	Barchart \| Table
Spo22838	0.66	Barchart \| Table
Spo01114	0.66	Barchart \| Table
Spo17628	0.66	Barchart \| Table
Spo16321	0.66	Barchart \| Table
Spo00242	0.65	Barchart \| Table
Spo16367	0.65	Barchart \| Table
Spo02275	0.65	Barchart \| Table
Spo14366	0.65	Barchart \| Table
Spo22410	0.65	Barchart \| Table
Spo16817	0.65	Barchart \| Table
Spo08200	0.65	Barchart \| Table
Spo12064	0.65	Barchart \| Table
Spo01806	0.65	Barchart \| Table