Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTTTGGCTTTCTCGTCAATTAAGGTATATATTTACTCTTTTATTGTTTTCCAATTTAAGTTGGTGTTGTTTTTTATAATAAAATAATAATCCTCTTGTCATTTTCTCACAGGTTAGATAATCACTCCCCCCACATCGCCTATAGACTTGAAACTTCTATATAAGCAAAACCTTTTAGCATTCCCCTACCACAAAGTAAGAAGGTAACCATAACCCCCTTTCTTTCCCCCAAAAAAACTTTCATTCTCCTAGAATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGTTGGTAACTTCCCTCCTCCTCTTTGCCTTCAATGTATGCCTTCGTGGTGTCTACGGTGACTATGGCGGCGGTTGGACAGATGCCCATGCCACATTTTACGGTGGAGGTGACGCTTCTGGCACAATGGGTAAGTTGACATATATAGTCTAAAAAACATTATACGGAGTATCTTTAGCATTTCAGTACTTACCCAAATACCTAGTGTTTTTACCAAAACTCTTACTCATAGTTTACTAGATTAGATCCCGTGCATGCACGAATTTTGATATTTTTTATGACAAAATATTTAACTGAATATTTGTCAAACTATTGCATAGTTATAACATTTTTAACCTACTTGTTTAAATTTATTCATCTAATATGCATATTTAAAATGCTAATATGACAATTTGACCAAAATATTGAGTGATATATTTTCCATTATTAATATAAAGATTTGACTAAAATATTACCAATTTAGAATAATTATTACTACGTAGTATCTATTATTGCCATAATTTATAAATTAAAATTTATTTCCGTACATAAATAGTTTATAAAGAAAAGATAGAGAATAAAAATAAAATAAAACATATATATTTTTTTGGGAAAGTTGTTTTTGGTGGGAAAAATTCGCACCAGGAATTGACACGTGTTATTGCTGGTGTCTCTTTTAGTATATAGTAATATATAGTAAAATAGATGTTTATAATTAAGTAATTTAGTTAAATTCAAATATATATAGGGGGAGCATGTGGGTATGGAAACTTGTACAGCCAAGGGTACGGGACGAGCACGGCGGCGCTAAGCACGGCATTATTTAACAATGGAATGAGTTGTGGAGCTTGTTACGAATTGAAATGCAATGACGATCCAAGATGGTGCCTACAAGGAAGCATTATAGTAACAGCAACTAATTTCTGCCCACCAAACTATGCATTGGCTAATAACAATGGTGGATGGTGTAATCCTCCTCTTCAACATTTTGATTTGGCTGAGCCTTCTTACTTGAAGATTGCTCAATATCGTGCTGGAATTGTTCCCGTTTCCTTTAGAAGGTAGGTTTGTACTAATCCTATCCCTTTTTATTATTATCATTTGCCTTCTTTTGCTGATTATTTTTAACCAACTTAAATTTATTTTCTGATTAAAACTTATTTTTAATGGATATCGTTGGTTGTTAACAAGTTGGATGTAAATGTTTCTTGAAAGAGGAAGCTACCCACATGCATGTGGTTAAGTTTCATTTTGGAAGCAAGCGGGAAATTCTTTTTAATTACAAAGAAAATGACATTACATTTAGGCTCTTTTTTCTTCACTACGGAGTACTTGGCATTAATCATTCATAAAACAACTTAAAAAATCATGGTAAAACAAACTTTAACTGATCAAAATATTCAAAACTTCTTCTTTACTGAAATTTGTTTTAAATAAATGGACTTGAATAAGGCCCACGAAAATATACTCCGTATTTTTTTTCTATTTTCCTCTGCAGCAAATGTGGGTCGGTTAGGTGATATTGCTCCACGTCCTCTAGCAGATGGTCCTATGATTATTTATTGATAAATTGAATTGTTTTTAAAGTGGGCTTATTTATTGTATATTTTTAGGAGCGGATCCGAGTTAATCTCAGTGATTGGAATTTTTTTCCAATTAAATGGCAATTTTATAAATAATTGATGCTTTTATTACGAAAATGCCATTAAAGTGAGTTAAAGTACAATAACATGTCATCTATGGGCCACATGTACGGTCATTATTGTATTTTCACAATACATCAACAACTATGTAATATACAGTCAACAGGCCGCAATATACAAAAAGCTTCTACTATTAAACAATCCACAACTATAAATATTCAGTCAATCACTTACCAATAAACAATATTGCATTTTAGTAATTCATCAACAATCATAAAATATACAGTCAACGATAAGCGGTATACAATCAACACCGAGTAATATACAGTCAATAACTACAAATATACAGTCAACCACTAACATTAACACCTACAGTTTTGAAGCAAAATATTTACGAAAATGCCTTTTAATTGGAAATTTCTCTATATTTAGTAGTCTAAAATTGTATTGTTCAAAATTTCAGGGTGCCTTGTGTAAGAAAGGGAGGAATAAGGTTCACAATCAACGGACACTCCTACTTCAACTTGGTCCTCGTCACCAATGTTGGCGGTGCCGGTGACGCTCACTCCGTTTCGATAAAAGGTTCAAAAACTGGATGGCAAGCGATGTCACGGAACTGGGGTCAAAATTGGCAAAGCAACTCCTACCTCAATGGCCAAACCCTCTCCTTCCAAGTTACCTCTAGTGATGGAAGGACTATTACTAGCAACAACATTGTTCCTAGTGGTTGGCAATTTGGTCAAACTTTTGAAGGAGGACAATTTTGACTTTAAATCCAACAACATTTCTAAAGGAAAATAATTTCCTATGAAATTTCTTCAACAAATTAGGAAGATAATTCAGAAATCTGTAAATGGCCTGTAATTTTGCTGTGGTGCCTATATTCGCACCCGCTAAAAGGTCATTTTCCTTTATAATTATATAGAGATACGTAGGCTCGTGTTTTTTTCAGGGAGTCCGTTTTCTATAAGAAAATGATGTTCTTTTGCTCGATTTTAATGGGCTATAGAACATCCTTCTTTTTACTTAGATCATCTTGATTTTGGCGGGTGGTGTAATGTAATCTTGTTTTACATCAATGTAGTATGAATTTTTATCAAGGTATTACAAACCTTATCTTTCGGTTCACTTGGCTATTCCTTAAGCACCCTTGCAGACTACCTTGCTTGATCTTCTATTTATTTTCCCGTTTAAGGAGTAACTCAAGTACGTCAATTCATGTTATCTTTATCAAATATGAACTCTTATTAAT GGTTTGGCTTTCTCGTCAATTAAGGTTAGATAATCACTCCCCCCACATCGCCTATAGACTTGAAACTTCTATATAAGCAAAACCTTTTAGCATTCCCCTACCACAAAGTAAGAAGGTAACCATAACCCCCTTTCTTTCCCCCAAAAAAACTTTCATTCTCCTAGAATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGTTGGTAACTTCCCTCCTCCTCTTTGCCTTCAATGTATGCCTTCGTGGTGTCTACGGTGACTATGGCGGCGGTTGGACAGATGCCCATGCCACATTTTACGGTGGAGGTGACGCTTCTGGCACAATGGGGGGAGCATGTGGGTATGGAAACTTGTACAGCCAAGGGTACGGGACGAGCACGGCGGCGCTAAGCACGGCATTATTTAACAATGGAATGAGTTGTGGAGCTTGTTACGAATTGAAATGCAATGACGATCCAAGATGGTGCCTACAAGGAAGCATTATAGTAACAGCAACTAATTTCTGCCCACCAAACTATGCATTGGCTAATAACAATGGTGGATGGTGTAATCCTCCTCTTCAACATTTTGATTTGGCTGAGCCTTCTTACTTGAAGATTGCTCAATATCGTGCTGGAATTGTTCCCGTTTCCTTTAGAAGGGTGCCTTGTGTAAGAAAGGGAGGAATAAGGTTCACAATCAACGGACACTCCTACTTCAACTTGGTCCTCGTCACCAATGTTGGCGGTGCCGGTGACGCTCACTCCGTTTCGATAAAAGGTTCAAAAACTGGATGGCAAGCGATGTCACGGAACTGGGGTCAAAATTGGCAAAGCAACTCCTACCTCAATGGCCAAACCCTCTCCTTCCAAGTTACCTCTAGTGATGGAAGGACTATTACTAGCAACAACATTGTTCCTAGTGGTTGGCAATTTGGTCAAACTTTTGAAGGAGGACAATTTTGACTTTAAATCCAACAACATTTCTAAAGGAAAATAATTTCCTATGAAATTTCTTCAACAAATTAGGAAGATAATTCAGAAATCTGTAAATGGCCTGTAATTTTGCTGTGGTGCCTATATTCGCACCCGCTAAAAGGTCATTTTCCTTTATAATTATATAGAGATACGTAGGCTCGTGTTTTTTTCAGGGAGTCCGTTTTCTATAAGAAAATGATGTTCTTTTGCTCGATTTTAATGGGCTATAGAACATCCTTCTTTTTACTTAGATCATCTTGATTTTGGCGGGTGGTGTAATGTAATCTTGTTTTACATCAATGTAGTATGAATTTTTATCAAGGTATTACAAACCTTATCTTTCGGTTCACTTGGCTATTCCTTAAGCACCCTTGCAGACTACCTTGCTTGATCTTCTATTTATTTTCCCGTTTAAGGAGTAACTCAAGTACGTCAATTCATGTTATCTTTATCAAATATGAACTCTTATTAAT ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGTTGGTAACTTCCCTCCTCCTCTTTGCCTTCAATGTATGCCTTCGTGGTGTCTACGGTGACTATGGCGGCGGTTGGACAGATGCCCATGCCACATTTTACGGTGGAGGTGACGCTTCTGGCACAATGGGGGGAGCATGTGGGTATGGAAACTTGTACAGCCAAGGGTACGGGACGAGCACGGCGGCGCTAAGCACGGCATTATTTAACAATGGAATGAGTTGTGGAGCTTGTTACGAATTGAAATGCAATGACGATCCAAGATGGTGCCTACAAGGAAGCATTATAGTAACAGCAACTAATTTCTGCCCACCAAACTATGCATTGGCTAATAACAATGGTGGATGGTGTAATCCTCCTCTTCAACATTTTGATTTGGCTGAGCCTTCTTACTTGAAGATTGCTCAATATCGTGCTGGAATTGTTCCCGTTTCCTTTAGAAGGGTGCCTTGTGTAAGAAAGGGAGGAATAAGGTTCACAATCAACGGACACTCCTACTTCAACTTGGTCCTCGTCACCAATGTTGGCGGTGCCGGTGACGCTCACTCCGTTTCGATAAAAGGTTCAAAAACTGGATGGCAAGCGATGTCACGGAACTGGGGTCAAAATTGGCAAAGCAACTCCTACCTCAATGGCCAAACCCTCTCCTTCCAAGTTACCTCTAGTGATGGAAGGACTATTACTAGCAACAACATTGTTCCTAGTGGTTGGCAATTTGGTCAAACTTTTGAAGGAGGACAATTTTGA MASSSSSSSSSSMLVTSLLLFAFNVCLRGVYGDYGGGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGMSCGACYELKCNDDPRWCLQGSIIVTATNFCPPNYALANNNGGWCNPPLQHFDLAEPSYLKIAQYRAGIVPVSFRRVPCVRKGGIRFTINGHSYFNLVLVTNVGGAGDAHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQTLSFQVTSSDGRTITSNNIVPSGWQFGQTFEGGQF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16876.1 vs. NCBI nr
Match: gi|902125652|gb|KNA04067.1| (hypothetical protein SOVF_203090 [Spinacia oleracea]) HSP 1 Score: 533.1 bits (1372), Expect = 2.700e-148 Identity = 258/259 (99.61%), Postives = 259/259 (100.00%), Query Frame = 1
BLAST of Spo16876.1 vs. NCBI nr
Match: gi|731320066|ref|XP_010670609.1| (PREDICTED: expansin-A4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 472.6 bits (1215), Expect = 4.400e-130 Identity = 216/251 (86.06%), Postives = 239/251 (95.22%), Query Frame = 1
BLAST of Spo16876.1 vs. NCBI nr
Match: gi|356509072|ref|XP_003523276.1| (PREDICTED: expansin-A8-like [Glycine max]) HSP 1 Score: 464.9 bits (1195), Expect = 9.100e-128 Identity = 212/245 (86.53%), Postives = 230/245 (93.88%), Query Frame = 1
BLAST of Spo16876.1 vs. NCBI nr
Match: gi|358248299|ref|NP_001240113.1| (expansin precursor [Glycine max]) HSP 1 Score: 464.5 bits (1194), Expect = 1.200e-127 Identity = 212/248 (85.48%), Postives = 232/248 (93.55%), Query Frame = 1
BLAST of Spo16876.1 vs. NCBI nr
Match: gi|922382576|ref|XP_013461515.1| (expansin A10 [Medicago truncatula]) HSP 1 Score: 460.7 bits (1184), Expect = 1.700e-126 Identity = 207/244 (84.84%), Postives = 231/244 (94.67%), Query Frame = 1
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9V9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_203090 PE=4 SV=1) HSP 1 Score: 533.1 bits (1372), Expect = 1.900e-148 Identity = 258/259 (99.61%), Postives = 259/259 (100.00%), Query Frame = 1
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CXE0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042540 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 3.000e-130 Identity = 216/251 (86.06%), Postives = 239/251 (95.22%), Query Frame = 1
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Match: I1JYB5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G222100 PE=4 SV=1) HSP 1 Score: 464.9 bits (1195), Expect = 6.300e-128 Identity = 212/245 (86.53%), Postives = 230/245 (93.88%), Query Frame = 1
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Match: C6TDU0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G143300 PE=2 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 8.300e-128 Identity = 212/248 (85.48%), Postives = 232/248 (93.55%), Query Frame = 1
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Match: A0A0B2R1N9_GLYSO (Expansin-A8 OS=Glycine soja GN=glysoja_038308 PE=4 SV=1) HSP 1 Score: 464.5 bits (1194), Expect = 8.300e-128 Identity = 212/248 (85.48%), Postives = 232/248 (93.55%), Query Frame = 1
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1) HSP 1 Score: 413.7 bits (1062), Expect = 1.500e-114 Identity = 193/250 (77.20%), Postives = 221/250 (88.40%), Query Frame = 1
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 2.600e-114 Identity = 190/243 (78.19%), Postives = 215/243 (88.48%), Query Frame = 1
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1) HSP 1 Score: 408.3 bits (1048), Expect = 6.300e-113 Identity = 187/246 (76.02%), Postives = 213/246 (86.59%), Query Frame = 1
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2) HSP 1 Score: 401.4 bits (1030), Expect = 7.700e-111 Identity = 191/254 (75.20%), Postives = 216/254 (85.04%), Query Frame = 1
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2) HSP 1 Score: 398.3 bits (1022), Expect = 6.500e-110 Identity = 184/248 (74.19%), Postives = 211/248 (85.08%), Query Frame = 1
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Match: AT2G40610.1 (expansin A8) HSP 1 Score: 413.7 bits (1062), Expect = 8.500e-116 Identity = 193/250 (77.20%), Postives = 221/250 (88.40%), Query Frame = 1
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Match: AT1G26770.2 (expansin A10) HSP 1 Score: 412.9 bits (1060), Expect = 1.400e-115 Identity = 190/243 (78.19%), Postives = 215/243 (88.48%), Query Frame = 1
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Match: AT1G69530.3 (expansin A1) HSP 1 Score: 404.4 bits (1038), Expect = 5.100e-113 Identity = 185/242 (76.45%), Postives = 211/242 (87.19%), Query Frame = 1
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Match: AT2G03090.1 (expansin A15) HSP 1 Score: 398.3 bits (1022), Expect = 3.700e-111 Identity = 184/248 (74.19%), Postives = 211/248 (85.08%), Query Frame = 1
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Match: AT5G05290.1 (expansin A2) HSP 1 Score: 395.6 bits (1015), Expect = 2.400e-110 Identity = 183/244 (75.00%), Postives = 209/244 (85.66%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16876.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo16876.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo16876.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo16876.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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