Spo10841 (gene) | SpinachBase

Overview


Name	Spo10841
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Phosphoglucan phosphatase LSF1
Location	SpoScf_00206 : 631893 .. 640168 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGTGCAAAGAAATTGTTCATTACCAAGAAGAAGAAGGAAGTGGAGAAAGGGGAGGTGGAGTGTGTAAACGAGATGATGAAAAAGCTAGAAACTGTGTCCCTATGTGTTGAAGAGGAGGTCCAAGGGGAGGGAGTGAAACAAATAGCAACACATGCTGGCCAGACTAGGGGATCGGATGGGGAGAGCAAGGAAACTAGAGTGACGAAACAAGGGTTGCTCCCTGGGAGCGAGGTAGGGCAAGACACGAAAAAGGTGGGTGGGAATGGTACTGATGAGGTGGGGAAAGTGACAGAGGTAACGGGAGACAATGTAGTGAGGCAGGTGGAACCAACGGGAGCTTCGCTCCTACCNTGACAGAGGTAACGGGAGACAATGTAGTGAGGCAGGTGGAACCAACGGGAGCTTCGCTCCTACCCCCATTGAACTTTTCAGTGGGATGCTCATCATCAACTACTGGACGTAAGTACAGGAAATTTAGGCGTGAAGGAGGGGAAATAGGGTCGCAGGGGGTGGATGGAGAGGCAGTGTTCATGGGGGGGAAGCGCAAAGATTGTATGGAGATCGATGAAGAGGAGGATGGTTTGAAGGGAACAAAACAGGCGGACCGTAAGGGGTGTGTCAAAGTAGCGGTGGTTGGTCTTCACCAACCCCGCGAATACCAATGAAAATATTAAGCTGGAACTGCCAGGGGCTTGGCAACCCCCGGACAGTAACAGCCCTCCGAGACAGGTGTTGGAGGGATAGGCCAGAAATTTTCTTCTTGATGGAGACGATGATCGATGCGCAGAAGTTGGAGAGAATAAAGGTGCGGTGTGGGTATACAAATGGGGTGTGTATGAGCAGTGACGGGAGGTCGGGGGGTATGGCATTCTGGTGGAGAGATATCAATGTGAGGGTCGCGTCGTATTCGGACCATCATGTTGATGCGGAGATTCTTGATCACAACGGCAATGTGGCATGGAAAGCGGCGGGGGTGTACGGGTGGCCAGAGAGGGAGAGGAAACACTTAACGTGGGAAATGATGGGGAACTTATGGGGTGAGTGTATGAGTCCGTTGGTTTTATTTGGGGATTTTAATGAAATTGCAGGGCCATCGGAAAAGGAGGGAGGGGTGAGTAGAGGGGAGAGACAAATGGACGCGTTTAGGGCTGCTATGGATCAATGTAGGGTGCGGGATTTGGGCTATAGAGGAAGCATTTTTACGTGGCAAAGGGGATTATCTACAACTACTGTTGTACGGGAACGCCTCGACAGGTTCCTGGCTAACGTTGCATGGTCCACCCTTTTCCCCAACGCGGCTGTAATTCACTTGCCTCGTTACCGTTCCGATCATACCCCATTACTTCTGAAATCCGATTACTTGGGTGGTAGACATCAGGTCGAAAGGTTGTTCAAATTCGAGGCCCTTTGGCTCTCGAAGGAAGAATGTGGTGATGTAGTAGCAGCCTCATGGCACGAACAAGCAGGGGGGTCAGTGACGGAGAGGATAGAAAATTGCTCTCAAGCTTTGTCTGCGTGGGCTGCGGGTACCATTGGTAGTATTAAAAAGAAGATCAGGGAGGTGGAAAAGGAGCTCAAGGAGCTGCAAAACAGGTCACCTGATGCTACGGTGATCGAGAGGAGTACGGAGATTTGTGGTAGGTTGGACGAGTTGCATATGCTTGAGGAGTCTTACTGGCATGCTCGAGCTAGAACTAACGAGCTTCGTGATGGTGATAAAAACACAAAATATTTTCATCACAAAGCGAGTCAGCGGAGGAGGAGGAACTATATTGCGGGCTTGAATGATGAGCTAGGGGTGTGGACAACGGAAAAGGTAGAGGTACAGAAAATCGTTGCTCGATACTTTGATGGTTTATTTGCGGCAGAACCTTCAAATGGAGGTGAGGAGGCGTTAGCGGGCCTCGAACCGGTTGTCAATGGGGAGATGAATGCACGGCTAGATGCGGAGCCAACTGTGGAAGAGGTTCGTGAGGCTCTATTTCAAATGCACCCGAACAAAGCTCCGGGACCAGATGGTATGCATGCCTTGTTCTTTCAAAAATTCCGGAATATAATTGGGTCTGATGTTGTGAACTTTGTGAAAGGGTGGTGGAGGGGTAACGTAGACTTGTGGCCGATTAATAAAACATGCATTGTCCTCATTCCCAAGTGCAATGATCCAAAATTGATGAGCGAGTTTCGTAGATTAGCTTATGTAACGTTCTTTATAAGATCATTTCAAAGACAATGGCTAATAAATTAAAACCTTTTTTGGATTCGATTATCTCTATTAATCAAAGCACTTTTGTTCCGAAGCGACTTATTACAGATAATGCGTTGGTGGCTTTTGAGATCTTCCATGCAATGAAAAGAAGGGGGGAGGGGAAGGATGGGACGATTGCTCTCAAACTTGATATGAGCAAGGCATACGATAGAGTGGAATGGAGTTTCCTGGAAAGGGTTATGTTTCGTATGGGCTTTAGCGACAACTGGGTAAGGCGAATTATGGATTGTCTTTCAAGTGTTTCCTTCTCTTTCAAGATCAACGGGCAAATATCCGGGTCCGTGTATCCGACAAGAGGGTTGCGCCAAGGTGATCCTATCTCTCCATATTTGTTTCTCTTATGTGCTGACGCCTTTTCTACCTTGTTATCTAAGGCTGCTAGAGAAAATAGCATTCACGGGGCACGCATCTGTCGTGGCGCTCCTAGAGTGTCGCATTTGTTCTTCGCAGATGACAGTATTCTATTTGCCAGAGCCAATTTGCTAGAATGCNGTTCTTCGCAGATGACAGTATTCTATTTGCCAGAGCCAATTTGCTAGAATGCTCTAAGATTGCTTAGATCATCAGTACTTATGAAAGAGCTTCGGGTCAGAAAGTTAATTTAAGCAAAACGGATGTGGTATTTAGCAAGCGGGTGGGCTTTGAGAGAAGGTAGGCTATTGTGGAGACCTTGGGAGTACGAGAGGTGGTGAGGCATGAGAAGTACTTGGGCTTACCGACAATCATAGGCAAATCCAAAAAGGTGGTTTTTGCGGGCTTAAAGGAGAGGTTGTGGAAGAAGTTGAATGGATGGAAGGAAAAGCTCTTGTCCCGTCCTGGCAAAGAAGTATTGATCAAAGCAGTTGCTCAAGCCATTCCCACTTATATGANTGATCAAAGCAGTTGCTCAAGCCATTCCCACTTATATGATGAGTGTATTTAAAATCCCGGATGGTTTGTTGGATGAGATGCAAGCACTTATTGCCCGGTTTTGGTGGGGTTCGTCGGATACGGGTAGAAAGATGCATTGGCACAATTGGGAATCGATGTGTCTACCAAAGTCAATGGGCGGCCTAGGCTTTCGCGATCTTAAATGCTTCAATCAAGCTATGCTAGCAAAACAGGCGTGGCGACTTCTAAATGATACCAATTCACTGCTTCACTCGGTCCTAAAGGCACGGTATTTTAAAAACGGTGACTTCATTGATGCAAGAAGGGGGTACGATCCGAGCTATACATGGAGAAGTATATGGGGCTCAAAATCGCTGCTGCTCGATGGCCTTAAGTGGAGGGTTGGGAACGGACTAGACATTGGTGTGTGGGAAGAGGCGTGGTTACCCGGCGAGGGCACAAGTTTGGTTCCAACGCTAAACCTGAATTTTGACAGTGAGCTAAGGGTGAGTGATCTTATTGATACGAATGTGGGGGCCTGGAATGAAGAGACAGTAAGGGAGATTTTTAATGAGGAAGAGGCTGCACTAATCCTTGATATCCCCGTATCCGAGTATATGCCGTCCGACCAACGTTACTGGTGGCCTTGCAAAGATGGGGTGTATTCTGTGAGAAGTGGGTACTGGTTGGCGAGGCTCGGGAAGACTCGAGCGTGGGCTACCTTATACGGTCCAAGGGAGGAAAGATTATGGCGATGTATGTGGAAACTTACGGGACCTCCAAAACTCCGACACTTTATATGGAGAGCTTGCAAAGGCAGCCTTGCGGTGAAGGAGCGGCTACATTATCGGCATGTGGTGGATAATAGTAATTGTCAGGTATGTAACTGCTCTAGTGAAACAATCTTCCATTCTTTGTTTGAATGTACGGCTGCCCGTGTAATCTGGTCACAAAGTCAGTTCGCGGACTTAATAGCGGAGGCCCCCTCTACTTCTTTCCCCACGATGTTCGAATGGGTAGCAAGCAGGTTGAACGGAGACGAGTTGAGATGGTTTTGCACAATAGCGTGGGCTGCGTGGTTTTGTAGGAATGATAAGCTGAATAACAATGGCGTGGCTAACCCCATCCAAATAGCTGCGAACTTTGCAAAGTTGGTGTCAGACTACGTCGAGTACGCACAGTTGGTCTTCACACCAGCTCCTGGTGCAGCTAGAGGTAGCGCGTTAGGGTGGAATACACCTATGGAGGGGCACATCAAAATCAACTCTGACGCCCACATCGCGGGCGGTTCTGGTGTAGGATTGGGTGTGGTTCTGCGGGATTCGGAGGGGCAGATTGTGGCTGCAGGTGTGAGAAAGTTGGATGCTAGATGGGGTGTGGAACAAACCGAGGTGGCTGCGGCGAAATACGGTTTACAGCTTGCTCACAGGTTGGGTTTCCCAAGGGTGGTGCTGGAGTGTGATTCAATGAATGTTGTGCGTGCTATCAACGATAGAGCTGCTGGCTTCTCCCCTCTTATGCTGTTTTATGAAGATATTGCTAAATTGAAAACCTCCTTTGAGTCTTTTAGCTGTAATCATGTTAGTAGAAAGTGTAATACGGTGGCTCATCTCATGGCAAGATGGAGTACCAATGTCCGAGAGCTTGTTTTTGAGGACAATTTCCCCCAAAGTCTCACCACTTTGGCGGGACTTGATTTAATATAATATATGTCGGCCTAACGTTTCTATCAAAAAAAAAAACATAATATTGGAAACTTTAAATACTTATTGTATTACAAGGATAATATGAATTTTTCCCTAAACAAATTTAATGAATATTCCATATTTAGTGGTTTTATTAAAGAAACATTACGTTAAAAAAATGGGCGAAAAAAATTACGTAATATAAGAAAAATGAGGGACAAATTTTTTTTGGAAAACAAATACGCTTAGACCCATTTAGGACCCAGATCCGACCCTAGACTCATTAGACCCAGTGGATCTGGGTCTGGGTCTGATATTTTTAGACCCAACGGATCTGGGTCTGATATTTTTAGACCCAACGGATCTGGGTCGGATCTGGATCCACCTCTTAACAAGCGGGTCTGGGTCTGGATCCTGTCGGACCCGATCCAGATCCGACCCATTGCCATCCCTAATCGATGGTGGACAGCGGCACAATTACCCCATACCCGGGGTAAAATGGTAATTTCTTCTCATGAGGTGAAAAGTCAAACAAAGTACTAAGTATAGGCAACAAGGACAGTACTTAGTACAACAATGACTGTATTTTAATACAACAATGACAGTATTTATGCAAACGATGACAATACTTATATAACATGCACTTGTATACATACTTTTACCCATTCGTTTAATATGCAACACTTTTATCCATTCATTTAAGTGGTCTCTTTACTTTTTATATTTCATTACAGTTGTATACATAATTTCCTTTTTTTGGGTGATTGTGACAGTATTTTAATACAACAATGACTGTATATATACAACAATGACAATACTTATATTACCGTTGACAGTATATAACAAGTTAGCAACACTTTTACACATTTATTTAAGGGTGGGTCATGTTTCCAATTTTTTTTTTGGGGTGGGTATGGGGTCCTTATTTCGCTGGTGACCAGCGATGTAGACAACCTCGTCTAGAGGGAAATTAAATAGCATATGAATGCACATGTTGTTTGGTACTACGTAGAACTGTAGAAGATGATAACTAGGAGGTTGTTTTTCGCATATTAGATATGTGTGGCAACACATATATCAACTAAAAGATAAATAACTAAAAGACAAAAAAAAGTACCATTCTGTAAGAAAAAAAGTACCATTTTTGTTTTAAAAAGTACCATATATTTAATTTCTTTTTTGTCATTTTTCCTATTTTGTCTTTTGCTATGATATGTACTTGCAAGCACATATCTGATATCCGAAAATATTTCCTCGATAACTAGTGGCAATCGAAATAAATTTGCATTGTAAATGTGTTGGAAATGTCATATTACATTACCCGTGGACCGTGGTACATCAAGTATCTCATTTTCTTAATTTCTAAATATTGATTATCACCCATTACCCCCAGATGAAAACTCTGTAAAAAGTAGGGATGAAATTTCATTATCATGAACATTATGATGTTATTTATCATTTCAAATTACACATTAAGGATTGAACTACTACGAAACATACTATTAAATGGGTCATAAGTTATGGATTTTATCAAGTATTGAATTGTCCTATACGAGAATGTTGTTGTAAACAATTTCTGTAAAATTAAAATTGCACTACTACAAAAATATCCAAAGAGATCTCTAAAAACAGACCTCTTATCTTAATTAAAAGGTCTCTTTAGTTTAAAAGACCTCATATTATAAATAACGGGTTTCTTTACTCTCTTATATTAACTTGGTCCAACTTAAAGACAACAAAATATAAAGCAGAGACCCGATGACATAGATAGGAGGTCTCTTAGGAAATTATGTATACTTTCTCTCTCTCCATTTTCAATTTTTATTGGGTTTAGTTGGTGTTCTACTTTTAATTGAATATTTAGGTATTTGCAAAGTTTTTCTATGAAATTTGGCCCTGCAAACTCTTACATTTGAACAAATTTCTTCCACATTGTAAGTATGTTTTTCTTCATCTTTTAGTGCTTTAATTTGGATATTTATTTTAACTGGCATTATCCGACTGATTTGTGCATTAGATTGAATCTATCATGTCCGCCTTTTCTCTCTAGGCACAGTCTTGTTTTTGCTACCAAGATATTCTATCTTCAATATTTTGACCAATGTGATTTTCATAGTTGTTTTGGACAATTAGGTAATATGTATGGCTGTGAATATTTCTTTAGAAATAAATTGATGTGTTGTGTTTATGGAAGTAGGAATTACTGTGATTATTGTCTTGAGTTGGAAAATTCCTTTTGACAAGAGGTAGTTTTCTTTTCCAGGGTCTGTGTTATCCCTCTTGTTTATCTCTGTAACTCCAATTTCATGTTTTATCAAATAGTCTATGGCTCTTTACATTTACTAATTGTGAGTGTTTGCTGATTTGTTTTTAATGGCAGGGTGAAGATCATGTGTGCTTGGTCAGGGATTTCACCGGTAATTGGAAAGATCCAATTAAGGCAGTGCACAAAGGAGGCCCAAGATTTGAAATTGAAATTCAACTACCAAAAGGGAAGTAAGTATAAGCTCTGGTGAGCAATACAGTATCATTTTATTATCATAATGGAGCACGAAATAAGAATATTAATTTTTCTTTTCTGCACATCCTTAGTCAAATAGTGGGAGATTAAATTTGCGGGGTGCGGTTGTAATGAATCAGATATTCAATATAAGCAATTAACCAGAATTTAAGCAAGACAAATGGATCAAAATTGAGCAATAGAGGAAGTTGTTAAAGATTAAAGATAGTAGAGATGAGAACACCAGTCTAAGCATTTGAGAGGCTTGTACAATCTTCTTTTTTCTTTGGTCTCTCTCAAAACAGAAAATTACATTCAAAATCAACATTATTCTCTTTCTCTCTCCTCTCTTCCCCTTTTATTACATTTTCATCACAACTTCTTACACCTTTCTAACCAACTATCTAGTACTCTGGTAGCACATATTTTCTTTAATGGAATGATGGTGTCTGCTCATTGTACCCTTTACCTTAAGCCTAAGTCAGCAAAACAGGTGGTCAGATATGTTATTTTCAACAAACTAGACTAAAATTATGATTTCCTTGCTCTTTCCAATTTGTTAGGCTTTGATGATAATGTTTAGCAGTCTGATATTCGTATAAACAAACAGTTATTCCTTCTTTTCTCTCTCTATATCCCTTGCAGGCCTTTAAACTGTTATGATTACATTGAATGAGATAATGCAACTTTCCTCCCTCCATGATAATGTAGAACAATTTTATTTCACACGTCTGTTTGAAAAAATTCTTATTTCTCGTGGTATCCACTCGGGCAAGCAATAGAACTATGATTTCACCACTCTTGTGTGGAACTTGTCTTTTTTAGTTCTTTTGGCTTCGAACAAAATCTGAGCTCTTTTTACGTTCAAACGGTTAATTGCTTTCATGTGAAGTAGATGGTAAATTGTCTATATCACTAAATAAATATTGGTAACCTGCTAATTATGTGG

mRNA sequence

ATGGGGTGTGCAAAGAAATTGTTCATTACCAAGAAGAAGAAGGAAGTGGAGAAAGGGGAGGTGGAGTGTGTAAACGAGATGATGAAAAAGCTAGAAACTGTGTCCCTATGTGTTGAAGAGGAGGTCCAAGGGGAGGGAGTGAAACAAATAGCAACACATGCTGGCCAGACTAGGGGATCGGATGGGGAGAGCAAGGAAACTAGAGTGACGAAACAAGGGTTGCTCCCTGGGAGCGAGGTAGGGCAAGACACGAAAAAGGTGGGTGGGAATGGTACTGATGAGGTGGGGAAAGTGACAGAGGGTGAAGATCATGTGTGCTTGGTCAGGGATTTCACCGGTAATTGGAAAGATCCAATTAAGGCAGTGCACAAAGGAGGCCCAAGATTTGAAATTGAAATTCAACTACCAAAAGGGAAGTAAGTATAAGCTCTGGTGAGCAATACAGTATCATTTTATTATCATAATGGAGCACGAAATAAGAATATTAATTTTTCTTTTCTGCACATCCTTAGTCAAATAGTGGGAGATTAAATTTGCGGGGTGCGGTTGTAATGAATCAGATATTCAATATAAGCAATTAACCAGAATTTAAGCAAGACAAATGGATCAAAATTGAGCAATAGAGGAAGTTGTTAAAGATTAAAGATAGTAGAGATGAGAACACCAGTCTAAGCATTTGAGAGGCTTGTACAATCTTCTTTTTTCTTTGGTCTCTCTCAAAACAGAAAATTACATTCAAAATCAACATTATTCTCTTTCTCTCTCCTCTCTTCCCCTTTTATTACATTTTCATCACAACTTCTTACACCTTTCTAACCAACTATCTAGTACTCTGGTAGCACATATTTTCTTTAATGGAATGATGGTGTCTGCTCATTGTACCCTTTACCTTAAGCCTAAGTCAGCAAAACAGGTGGTCAGATATGTTATTTTCAACAAACTAGACTAAAATTATGATTTCCTTGCTCTTTCCAATTTGTTAGGCTTTGATGATAATGTTTAGCAGTCTGATATTCGTATAAACAAACAGTTATTCCTTCTTTTCTCTCTCTATATCCCTTGCAGGCCTTTAAACTGTTATGATTACATTGAATGAGATAATGCAACTTTCCTCCCTCCATGATAATGTAGAACAATTTTATTTCACACGTCTGTTTGAAAAAATTCTTATTTCTCGTGGTATCCACTCGGGCAAGCAATAGAACTATGATTTCACCACTCTTGTGTGGAACTTGTCTTTTTTAGTTCTTTTGGCTTCGAACAAAATCTGAGCTCTTTTTACGTTCAAACGGTTAATTGCTTTCATGTGAAGTAGATGGTAAATTGTCTATATCACTAAATAAATATTGGTAACCTGCTAATTATGTGG

Coding sequence (CDS)

ATGGGGTGTGCAAAGAAATTGTTCATTACCAAGAAGAAGAAGGAAGTGGAGAAAGGGGAGGTGGAGTGTGTAAACGAGATGATGAAAAAGCTAGAAACTGTGTCCCTATGTGTTGAAGAGGAGGTCCAAGGGGAGGGAGTGAAACAAATAGCAACACATGCTGGCCAGACTAGGGGATCGGATGGGGAGAGCAAGGAAACTAGAGTGACGAAACAAGGGTTGCTCCCTGGGAGCGAGGTAGGGCAAGACACGAAAAAGGTGGGTGGGAATGGTACTGATGAGGTGGGGAAAGTGACAGAGGGTGAAGATCATGTGTGCTTGGTCAGGGATTTCACCGGTAATTGGAAAGATCCAATTAAGGCAGTGCACAAAGGAGGCCCAAGATTTGAAATTGAAATTCAACTACCAAAAGGGAAGTAA

Protein sequence

MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGSDGESKETRVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTEGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo10841.1	Spo10841.1	mRNA

Homology

[Close]

BLAST of Spo10841.1 vs. NCBI nr
Match: gi|902207771|gb|KNA15780.1| (hypothetical protein SOVF_095040 [Spinacia oleracea])

HSP 1 Score: 189.9 bits (481), Expect = 3.000e-45
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1

		  
Query: 1   MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS 60
           MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS
Sbjct: 1   MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS 60

Query: 61  DGESKETRVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE 101
           DGESKE RVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE
Sbjct: 61  DGESKEIRVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE 100

[Close]

BLAST of Spo10841.1 vs. NCBI nr
Match: gi|731376784|ref|XP_010667673.1| (PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EIE++LP+GK
Sbjct: 446 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIEVRLPQGK 484

[Close]

BLAST of Spo10841.1 vs. NCBI nr
Match: gi|870841498|gb|KMS95216.1| (hypothetical protein BVRB_010910 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EIE++LP+GK
Sbjct: 453 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIEVRLPQGK 491

[Close]

BLAST of Spo10841.1 vs. NCBI nr
Match: gi|902175458|gb|KNA08598.1| (hypothetical protein SOVF_161250 [Spinacia oleracea])

HSP 1 Score: 77.0 bits (188), Expect = 2.800e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EI+I+LP+GK
Sbjct: 243 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIDIRLPQGK 281

[Close]

BLAST of Spo10841.1 vs. NCBI nr
Match: gi|747100743|ref|XP_011098472.1| (PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Sesamum indicum])

HSP 1 Score: 75.9 bits (185), Expect = 6.300e-11
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWK+PIKAVHKGGPR+E+E++LP+GK
Sbjct: 469 EGED-VCLVGDFTGNWKEPIKAVHKGGPRYEVEVRLPQGK 507

[Close]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8G6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_095040 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.100e-45
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 1

		  
Query: 1   MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS 60
           MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS
Sbjct: 1   MGCAKKLFITKKKKEVEKGEVECVNEMMKKLETVSLCVEEEVQGEGVKQIATHAGQTRGS 60

Query: 61  DGESKETRVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE 101
           DGESKE RVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE
Sbjct: 61  DGESKEIRVTKQGLLPGSEVGQDTKKVGGNGTDEVGKVTE 100

[Close]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B2J7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_010910 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.200e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EIE++LP+GK
Sbjct: 453 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIEVRLPQGK 491

[Close]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DWI1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_010910 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.200e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EIE++LP+GK
Sbjct: 446 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIEVRLPQGK 484

[Close]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPI4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_161250 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-11
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED VCLV DFTGNWKDPIKAVHKGGPR+EI+I+LP+GK
Sbjct: 243 EGED-VCLVGDFTGNWKDPIKAVHKGGPRYEIDIRLPQGK 281

[Close]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Match: A0A068U0P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039397001 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.700e-10
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1

		  
Query: 100 EGEDHVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           EGED V LV DFTGNWK+PIKAVHKGGPRFE+E++LP+GK
Sbjct: 483 EGED-VYLVGDFTGNWKEPIKAVHKGGPRFEVEVRLPQGK 521

[Close]

BLAST of Spo10841.1 vs. ExPASy Swiss-Prot
Match: LSF1_ARATH (Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.000e-10
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1

		  
Query: 83  DTKKVGGNGTDEVGKVTEGED--HVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           D  K  G  T  V  V  G +   V LV DFTGNWK+PIKA HKGGPRFE E++L +GK
Sbjct: 445 DDGKHDGTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGK 503

[Close]

BLAST of Spo10841.1 vs. TAIR (Arabidopsis)
Match: AT3G01510.1 (like SEX4 1)

HSP 1 Score: 65.1 bits (157), Expect = 3.900e-11
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1

		  
Query: 83  DTKKVGGNGTDEVGKVTEGED--HVCLVRDFTGNWKDPIKAVHKGGPRFEIEIQLPKGK 140
           D  K  G  T  V  V  G +   V LV DFTGNWK+PIKA HKGGPRFE E++L +GK
Sbjct: 445 DDGKHDGTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGK 503

The following BLAST results are available for this feature:

BLAST of Spo10841.1 vs. NCBI nr
BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
BLAST of Spo10841.1 vs. ExPASy Swiss-Prot
BLAST of Spo10841.1 vs. TAIR (Arabidopsis)

BLAST of Spo10841.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902207771\|gb\|KNA15780.1\|	3.0e-45	99.0	hypothetical protein SOVF_0950...	[more]
gi\|731376784\|ref\|XP_010667673.1\|	1.7e-11	85.0	PREDICTED: phosphoglucan phosp...	[more]
gi\|870841498\|gb\|KMS95216.1\|	1.7e-11	85.0	hypothetical protein BVRB_0109...	[more]
gi\|902175458\|gb\|KNA08598.1\|	2.8e-11	85.0	hypothetical protein SOVF_1612...	[more]
gi\|747100743\|ref\|XP_011098472.1\|	6.3e-11	80.0	PREDICTED: phosphoglucan phosp...	[more]

BLAST of Spo10841.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R8G6_SPIOL	2.1e-45	99.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8B2J7_BETVU	1.2e-11	85.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8DWI1_BETVU	1.2e-11	85.0	Uncharacterized protein OS=Bet...	[more]
A0A0K9QPI4_SPIOL	2.0e-11	85.0	Uncharacterized protein OS=Spi...	[more]
A0A068U0P5_COFCA	3.7e-10	80.0	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo10841.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
LSF1_ARATH	7.0e-10	55.9	Phosphoglucan phosphatase LSF1...	[more]

BLAST of Spo10841.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G01510.1	3.9e-11	55.9	like SEX4 1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0005983	starch catabolic process
cellular_component	GO:0009569	chloroplast starch grain
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0019203	carbohydrate phosphatase activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20139	0.72	Barchart \| Table
Spo23125	0.70	Barchart \| Table
Spo16861	0.66	Barchart \| Table
Spo17730	0.65	Barchart \| Table