Spo22131 (gene) | SpinachBase

Overview


Name	Spo22131
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00309 : 227711 .. 231414 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGGATATTTGCCGCCAGAGTAAAAATAGAATTTGGATTTAGTTTTCTAAAATCTTTTGAAACCGCCGAAGACCCTAAGAAAAAAAATAAGAAAAGTCGTCCTTAGGTTTAATTTATCAGAAATTCTATCATAACTTTCCTCTTCCAAAACCAAGGCAACAATTCATCCTTAGGTTTAATTTATCAGAAAATCGTCGTCTCGTCGTGGTCTTGATTTCAAGTTTCATCGAATTCGTTCTTCGAATTTCAGGATTCATCACATTCGCACATCCAATTACGTGTCTTAATCGTTGTCTTGCTCGTGGACTCGTGGACTTGATCGGGATTTTATCGAATTCGCGATTCCAATTTCATGTACTTTTTGATTTGTGAGTGTTCTTCATTTTTTTGGTTATTTAATTCTTTATTTTCAAGATTTCTATGAATTATTAAAATATAGATTATAGTGGTTTTTTTCGATTGGATTCTGAGCGTTATTGATTTTTTGTTTGATGCAGGGTAACTTTTTTTTGATTCTATGATTCAGTATTTTGATTCTGTGTGTTTGGTTTTGGTTTGGTTGCTAACCGTGAGTCTGTGTGTTTGGTTTGGTTTGGTCTGGTTGCCGACTGTGAGTCTGTATTTGGTTTGCAACTGCTATTTCTTGGAGCAGGTTGATGTATGATGTTCTTTCTCTCTGCTTATGGTTTTATTTTCTGCGTTTTTTGGTTCTCTGTAGTGAGGGATTCAAGTTTCCGAAGTCTGTTTGGTGCTAGTTGCTTTGTTTTTTTTGGTAGTTGTTGCATTCTTTTGTTTCTGGTAGATGGTAAACTCAAGCTAGGTTGAATGGTGACTGTAGTTTTCGGTTTGGGTTTTGGGTTTTCTAGTCCATAGTTGGATGTTTATGTAGAGGGGCAATCTGAAGACACATACTCCATACATAAGTGGAGCTCTTGAACCTACTGAGGATCTAAACTTAATTAGCTATTGTTAATGATGGTGTTATAAGCTGTTGTAGAGGAGTCATTTCTGAAAGAGTTGAGGTGCAACCACACACGAACAATGATTCAAATGTTGATGTCCATGAAGATAGTTCCGATCTTGATGAGACTGATTGGGATTGGATGAACCATTAGCCGGATTTGTCTTATTATTTTAGAGGATTGTTGAGCTTTATTTCTTGCTTTCAGTTTATTATGTTGTTTTCATAGTTGTAAAACATTTTCTTATTAATTTTTCCATTCTTGTTTAGTAGTACATCATTTAGTGGTTTTTAATTTTTCTCTTGGTGTGATAAGCAGGGGCCGTGTACTATACTAGAACTAAACAGTTTGGTAGATCCTGGAACTAATCCCTGGAGAGCTACTAGTGCATTTGGTAACATCAGGTGATTATTGAATAAATTATGGAAAATTATGCCTATTTATCTATTTTTATTTGTTATACTAGTGATCAGATGACCTTAAGTCTTTGATTATCAACGCTTGTATGTAGACAATATTTTTACCCTGTGCATTTTCTTACTATTCATATACTTATACTGTCAGTCAGTCACTGATATTTTTTATCCTCAAGTATTTTATGTTTTAGTCTTTGATTATTTGCTTTTATGTGGAATAAATGTTAATTCTGAGTCTTTTTAGTCATATGGCATTACTGAAAAGTGAGAACTGCATTGGATTTTTAGGAGTCATTCAATACTGGTGGTTCTTACGCGTATGTGTAATAATGAATCAATTGATGTATGAGGTTTTGGGTTTCTAGACCATGGATTGAAATCTAATTTACTTGTCATTTTCTTCAGATATTAGGCAATTCTGGAATGTTATGTAGAAATGCACTGACAAAAAGAAAAAAGAACTCATGTGTGTTAAGAGGTTTATTTGTCTTTTGCTTTGCTGCTCAATTGGTTCAGTGTAGTAATTTTCGTAATGTTTCAATGCTTGAATGCTGTGTAATTATAATATAGAAGGAAGTGAAAGATAACACTTAAAAGATTCATCGGAATGACTTTATTGTTGAACCAGCTATTTGCATATATCGCCTAATAAAAGTGGGAAATTAGTAAAAGATGGTTTTATATACTGTCTTGGTTATACTTGTTTTTCTGCCTGGATTTTGCTCCTGTCCTGGGATAAATTTTGGTCTTCGGTTGCTTTCGGTTGCCCTTCCCCGCAAAGTTATTGATTTCTAGGAGCTTTGATTTGAGAAGAACATCTAGATGGAATTGCACATTATCTTTGGACTGCCTTCCTTAATAACAGTAACGTTTAGAATTAATTGTTTGTTGTTGATTGCGATTAATGAGAAGCAATCCACAATAGTTAAATGAGACAATGTGGAATGTAATGAAAAGAATTCAGTTACACCTTTCTGTATAAATTAAGTCATTTTGGTGGAGGGAGAGGGGAGGAAAATTAAAAGAGCCTCCTTCAAATGTTAGAATATAGGTTAAGCTGATAGAGCAAGCAGTGTGGCCGACATAACATTTGTGTTCATTGATGCTGTGTTGATTTGTACAAAATGTGAGCGGTATTGTTTTAGGACCAACTTGAACACTGAATGTTACTAAGAGAAATCATACCATGGATATCATTTGTTTCTTGCTTGCCATATCTTGTATATAATAACAGCTGACCAGGTGAATTATCCAGACTAAACTGGCCTAAAACAGACCCAACCAATTTAATCAGACTTGCATACTAGAACAAGCAGGACAACAACTCAGTAGAACATAACCGTATTAGAGGACTAGGAATTAGAAATTCTCCATTAACTGAGATTATTGATATCTTTTCGTTTTGGTTATATTTCTTTTTTCGTCATGTGGCTGTGTGTTACTTGTTATATACTTTTGGAATAGGGTTGTTGTCACACTGTTTTGGCTTGGATGGGTCTAACAAAGTAAAATGAAAACTCGTCTTTTTTTGCTGGGCAGGACCCGAATCCTAAAGGCGAAAACCCAAAATCAAACTGAACAAGCCTAAAAAACCAAGGCCAACAAAAAAAAGAAACCTAAGGCTATATTGTTTTTGCTTCAATTACTTACTATGTTTTTGGTAAGTGGTACCCTTGACTGGTTTTGTTTTGGTGTTTGTTGATGAGCTTTAGCCCTGTTTTATAAAAGTTAACATACAACTTAGTAGGTCTTGCAAACATAAAAGTAAACAAGTATTGCAATTTGTAGCAGAATACCTAGCTCACAAATTTGTTTCATCTTAACTTCAGTTCTTGTAATGCAATTTCTGGTTGTGCTTTATGTGCTTTATATTATTATGGATGTTGGATCTTACTAATTTTATATTTATCTATGATCAAGATGATGGATTGGATCGGATAGCAAATGAAGATTAAAGTTGACATTGAGAATCATGCGCACGTAAGGGAAACCAGTTGAAGATGAAAAGATAGAAGACATTTAGTTTTGGATTATACATTTTAGTTTTGGATATGATCATTTGATTTTATTTTGAACATAATAATGTAATTTTCATAGATCGTACATCAAATACTATTATTTTAATTAATTTGTTAATTAGTTTGTTAGGGAGCGGGTTGTGCTCCCTTCCTTTAGTTGTTTCCTTGTTTGGAACTTATTTTGTGTACATACTATCTTTTGGTAATAAAATTGCTATTTTACCAAAAAAAAATTATAAATTTATTATTTATTATAAATATTATTATTTATGAACCAATTTTGTAATATTTGTTAAATTAT

mRNA sequence

ATGAAAGGAGGATATTTGCCGCCAGAGTTTAATTTATCAGAAAATCGTCGTCTCGTCGTGGTCTTGATTTCAAGTTTCATCGAATTCGTTCTTCGAATTTCAGGATTCATCACATTCGCACATCCAATTACGTGTCTTAATCGTTGTCTTGCTCGTGGACTCGTGGACTTGATCGGGATTTTATCGAATTCGCGATTCCAATTTCATGGGCCGTGTACTATACTAGAACTAAACAGTTTGGTAGATCCTGGAACTAATCCCTGGAGAGCTACTAGTGCATTTGGTAACATCAGGACCCGAATCCTAAAGGCGAAAACCCAAAATCAAACTGAACAAGCCTAAAAAACCAAGGCCAACAAAAAAAAGAAACCTAAGGCTATATTGTTTTTGCTTCAATTACTTACTATGTTTTTGATGATGGATTGGATCGGATAGCAAATGAAGATTAAAGTTGACATTGAGAATCATGCGCACGTAAGGGAAACCAGTTGAAGATGAAAAGATAGAAGACATTTAGTTTTGGATTATACATTTTAGTTTTGGATATGATCATTTGATTTTATTTTGAACATAATAATGTAATTTTCATAGATCGTACATCAAATACTATTATTTTAATTAATTTGTTAATTAGTTTGTTAGGGAGCGGGTTGTGCTCCCTTCCTTTAGTTGTTTCCTTGTTTGGAACTTATTTTGTGTACATACTATCTTTTGGTAATAAAATTGCTATTTTACCAAAAAAAAATTATAAATTTATTATTTATTATAAATATTATTATTTATGAACCAATTTTGTAATATTTGTTAAATTAT

Coding sequence (CDS)

ATGAAAGGAGGATATTTGCCGCCAGAGTTTAATTTATCAGAAAATCGTCGTCTCGTCGTGGTCTTGATTTCAAGTTTCATCGAATTCGTTCTTCGAATTTCAGGATTCATCACATTCGCACATCCAATTACGTGTCTTAATCGTTGTCTTGCTCGTGGACTCGTGGACTTGATCGGGATTTTATCGAATTCGCGATTCCAATTTCATGGGCCGTGTACTATACTAGAACTAAACAGTTTGGTAGATCCTGGAACTAATCCCTGGAGAGCTACTAGTGCATTTGGTAACATCAGGACCCGAATCCTAAAGGCGAAAACCCAAAATCAAACTGAACAAGCCTAA

Protein sequence

MKGGYLPPEFNLSENRRLVVVLISSFIEFVLRISGFITFAHPITCLNRCLARGLVDLIGILSNSRFQFHGPCTILELNSLVDPGTNPWRATSAFGNIRTRILKAKTQNQTEQA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22131.1	Spo22131.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo22131.1 vs. NCBI nr
BLAST of Spo22131.1 vs. UniProtKB/TrEMBL
BLAST of Spo22131.1 vs. ExPASy Swiss-Prot
BLAST of Spo22131.1 vs. TAIR (Arabidopsis)

BLAST of Spo22131.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo22131.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo22131.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo22131.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0009432	SOS response
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0045747	positive regulation of Notch signaling pathway
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0009691	cytokinin biosynthetic process
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0032259	methylation
biological_process	GO:0061025	membrane fusion
biological_process	GO:0016049	cell growth
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006281	DNA repair
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0006221	pyrimidine nucleotide biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0090406	pollen tube
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009536	plastid
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0019003	GDP binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0005047	signal recognition particle binding
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004715	non-membrane spanning protein tyrosine kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04104	0.70	Barchart \| Table
Spo15084	0.70	Barchart \| Table
Spo27352	0.70	Barchart \| Table
Spo23286	0.69	Barchart \| Table
Spo20081	0.69	Barchart \| Table
Spo05603	0.69	Barchart \| Table
Spo14942	0.68	Barchart \| Table
Spo05405	0.68	Barchart \| Table
Spo00812	0.67	Barchart \| Table
Spo11509	0.67	Barchart \| Table
Spo12107	0.67	Barchart \| Table
Spo22436	0.67	Barchart \| Table
Spo19850	0.66	Barchart \| Table
Spo02747	0.66	Barchart \| Table
Spo11431	0.66	Barchart \| Table
Spo00748	0.66	Barchart \| Table
Spo01531	0.66	Barchart \| Table
Spo19851	0.66	Barchart \| Table
Spo14096	0.65	Barchart \| Table
Spo00362	0.65	Barchart \| Table
Spo01243	0.65	Barchart \| Table
Spo02272	0.65	Barchart \| Table
Spo03438	0.65	Barchart \| Table
Spo00283	0.65	Barchart \| Table
Spo16339	0.65	Barchart \| Table
Spo16804	0.65	Barchart \| Table
Spo17386	0.65	Barchart \| Table
Spo17391	0.65	Barchart \| Table
Spo17940	0.65	Barchart \| Table
Spo23935	0.65	Barchart \| Table
Spo25945	0.65	Barchart \| Table