Spo16598 (gene) | SpinachBase

Overview


Name	Spo16598
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_3
Location	SpoScf_00340 : 402054 .. 404578 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAATCGGGACGGCAAAACCTTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAATAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCTGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGACCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGTGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTTGGGAGGGAAGCGGACGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGGTCCGCCGATCGGCTCGGGGCGCGGACCGACGCGGATTGCGAGGGCGTCAGAACCCCGGCTCACCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCCAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTCTTGGAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAATGGGCGAGTAAACTCGTACGGCGCAAGGAAGCTAATTGGCGGGATCCCCTAGCAGGTGCACCGCCGACCGATCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGTATACCTGTCGGGACCCAAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCAAAGCGATACTGACGTGAAAATCGTTCTTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCTCGTACGCGAGTTCTATCAGGTAAAGCCAATGATTAGAGGCCTCGGGGGCAAAATGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGATGGCGCGGCTGCTTTGTTGAGCCGCGCCGCGGAATCGATAGCTCCAAGTGGGCCATTTATGGTAAGACAAACTGGAGATGCAGGATGAACCGGAAGCCGGGTTACGGTGCCCAACTACGCGCTAACCTAGATCCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCACGTGACCTATACCCGGCCGTCGGGGAAAGTGCCAGGCCCCGATGAGTAGGAGGGCGCAACGGTCGCTGCAAAACCTGTGGCGTGAGCCAGGGCGGAGCGGCCGATGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATAAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACAGCACTTGCTCATGGGTTAGTCGATCCTAAGATACGGGGGAAGCCTGTCCGATAGCGCGTTTCGCGCGAGCTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGTGGCGGTTGACGGCAACGTTAGGAAGTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGAAGAGCACCGCACGTTTTGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCGACCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCTCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAGCTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGA

mRNA sequence

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAATCGGGACGGCAAAACCTTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAATAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCTGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGACCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTACCCTAGAGTCAAAGAGTGCTTGAAATTGTTGGGAGGGAAGCGGACGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGGTCCGCCGATCGGCTCGGGGCGCGGACCGACGCGGATTGCGAGGGCGTCAGAACCCCGGCTCACCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCCAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTCTTGGAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAATGGGCGAGTAAACTCGTACGGCGCAAGGAAGCTAATTGGCGGGATCCCCTAGCAGGTGCACCGCCGACCGATCTTGATCTTCTGAGAAGGGTTCGAGTGATAGCTGGAGCTCGTACGCGAGTTCTATCAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCACGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCTCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAGCTCAGAACTGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGA

Coding sequence (CDS)

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAATCGGGACGGCAAAACCTTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAATAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCTGTCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGACCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTACCCTAGAGTCAAAGAGTGCTTGAAATTGTTGGGAGGGAAGCGGACGGGGGCCGGCGATGCGCCCCGGTCGGATGTGGAACGGCCAAAAGCCGGTCCGCCGATCGGCTCGGGGCGCGGACCGACGCGGATTGCGAGGGCGTCAGAACCCCGGCTCACCGGGAGCGTCGTCCTCTCGATTGTGGTAGGCAGCGCGCGCCGTCACGGCGTGCTTCGGCACCTGCGCGCTCCAGGCGTCGGCCTGCGGGCCCCCCATTCGGCCCGTCTTGGAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAATGGGCGAGTAAACTCGTACGGCGCAAGGAAGCTAATTGGCGGGATCCCCTAGCAGGTGCACCGCCGACCGATCTTGATCTTCTGAGAAGGGTTCGAGTGATAGCTGGAGCTCGTACGCGAGTTCTATCAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCACGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCTCGTGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCCCGGGCGTCGAACAGTCAGCTCAGAACTGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGA

Protein sequence

MHRVAQHVAPEASKDPKLSPLIGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPNNGERTGNSPALESGGFAVRIVVWRSVLCGGPDPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGRYPRVKECLKLLGGKRTGAGDAPRSDVERPKAGPPIGSGRGPTRIARASEPRLTGSVVLSIVVGSARRHGVLRHLRAPGVGLRAPHSARLGTRTKESDMCASQWASKLVRRKEANWRDPLAGAPPTDLDLLRRVRVIAGARTRVLSAGRWSWKSKSAKECVTTHLPNQLAPKMDGAEARKGSRQNGSVTSGKGLALRAGHGGPSPEPVGCRRTARAALVARAGRRVPAGGRTGNGSFGGLPRASNSQLRTGSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo16598.1	Spo16598.1	mRNA

Homology

[Close]

BLAST of Spo16598.1 vs. NCBI nr
Match: gi|870767542|gb|KMS65341.1| (hypothetical protein BVRB_036970, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.5 bits (345), Expect = 5.600e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1


		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPNNGERTGNSPALESGGFAVRIVVWRSVLCGGPDPSP 91
           VRRG+PLSLSISISGG+ETYKDSP+NGERTGNSPALESGG AVRIVVWRSVLCGGP PSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74

[Close]

BLAST of Spo16598.1 vs. NCBI nr
Match: gi|953504095|emb|CEG35068.1| (atp synthase subunit beta [Plasmopara halstedii])

HSP 1 Score: 131.0 bits (328), Expect = 5.200e-27
Identity = 76/108 (70.37%), Postives = 80/108 (74.07%), Query Frame = 1


		  
Query: 275 GRWSWKSKSAKECVTTHLPNQLAPKMDGAE---ARKGSRQNGSVTSGKGLALRAGHGGPS 334
           G   WKS +A+  V+   P  L    D       RKGSRQNGSVTSGKGLALRAGHGGP 
Sbjct: 214 GSSGWKS-TARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAGHGGPC 273

Query: 335 PEPVGCRRTARAALVARAGRRVPAGGRTGNGSFGGLPRASNSQLRTGS 380
           PEPVGCR TARAA  ARAG RVPAGGRTGNG FGGLPRASNSQLRTG+
Sbjct: 274 PEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGT 320

[Close]

BLAST of Spo16598.1 vs. NCBI nr
Match: gi|954277581|gb|KRX69487.1| (hypothetical protein T06_12733 [Trichinella sp. T6])

HSP 1 Score: 123.2 bits (308), Expect = 1.100e-24
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 1


		  
Query: 307 KGSRQNGSVTSGKGLALRAGHGGPSPEPVGCRR-TARAALVARAGRRVPAGGRTGNGSFG 366
           KGSRQNGSVTS +GLALRAG       P+G     + A L  R  R  P           
Sbjct: 365 KGSRQNGSVTSEQGLALRAG-------PIGLSVFESEAELADRPARAEP--------ELR 424

Query: 367 GLPRASNSQLRTGSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLS 426
           G P       R GSQMPRHLISDA+EWIN+IP+VP+YY AKPQPRERAWQNQRGKKTLLS
Sbjct: 425 GCPFTCTD--RFGSQMPRHLISDAYEWINKIPSVPIYYLAKPQPRERAWQNQRGKKTLLS 471

Query: 427 LTLV 430
           LTLV
Sbjct: 485 LTLV 471

[Close]

BLAST of Spo16598.1 vs. NCBI nr
Match: gi|303291422|ref|XP_003064996.1| (predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 120.2 bits (300), Expect = 9.200e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


		  
Query: 381 MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT 436
           MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT
Sbjct: 1   MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT 55

[Close]

BLAST of Spo16598.1 vs. NCBI nr
Match: gi|961389434|emb|CUU98466.1| (hypothetical transcript [Hymenolepis microstoma])

HSP 1 Score: 119.8 bits (299), Expect = 1.200e-23
Identity = 66/100 (66.00%), Postives = 69/100 (69.00%), Query Frame = 1


		  
Query: 342 RAALVARAGRRVPAGGRTGNGSFGGLPRASNS------QLRTGSQMPRHLISDAHEWINE 401
           R  L  R G R+ A   TG       PR  +       Q   GSQMPRHLISDAHEWINE
Sbjct: 22  RLQLCIRLGWRLCAAALTGGVQAVVWPRGCSECQSEEIQPSAGSQMPRHLISDAHEWINE 81

Query: 402 IPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT 436
           IPTVP+YY AKPQPRERAWQNQRGKKTLLSLTLVRLCE T
Sbjct: 82  IPTVPIYYLAKPQPRERAWQNQRGKKTLLSLTLVRLCEET 121

[Close]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.600e-41
Identity = 88/100 (88.00%), Postives = 90/100 (90.00%), Query Frame = 1


		  
Query: 29  RPQVRRGYPLSLSISISGGEETYKDSPNNGERTGNSPALESGGFAVRIVVWRSVLCGGPD 88
           RPQVRR YPLSLSISISGG+ETYKDS +NGERTGNSPALESGG  VRIVVWRSVL GGP 
Sbjct: 110 RPQVRRDYPLSLSISISGGKETYKDSLSNGERTGNSPALESGGSVVRIVVWRSVLSGGPG 169

Query: 89  PSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR 129
           PSPLE GAREGESPVVPGPCRTTRRC RVGLFGNAA  GR
Sbjct: 170 PSPLEGGAREGESPVVPGPCRTTRRCLRVGLFGNAAQIGR 209

[Close]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Match: M1DS60_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043107 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.000e-37
Identity = 89/138 (64.49%), Postives = 99/138 (71.74%), Query Frame = 1


		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPNNGERTGNSPALESGGFAVRIVVWRSVLCGGPDPSP 91
           VRR YPLSLSISISGG+ETYKDS +NGE  GN+P LESGG  VRIV+WRS+L GG  P P
Sbjct: 30  VRRDYPLSLSISISGGKETYKDSLSNGELIGNNPTLESGGSIVRIVLWRSILSGGSGPCP 89

Query: 92  LERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGRYP--------RVKECLKL----- 151
           LE  AREG+SPVVPGPC TTRRC RVGLFGNA L    P        ++K  LK+     
Sbjct: 90  LEGDAREGDSPVVPGPCHTTRRCLRVGLFGNATLVKETPITYKYHEGKIKRILKIESKSA 149

Query: 152 LGGKRTGAGDAPRSDVER 157
           LGGK+  A DAP SDVER
Sbjct: 150 LGGKQMKADDAPWSDVER 167

[Close]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YP30_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_036970 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.900e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1


		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPNNGERTGNSPALESGGFAVRIVVWRSVLCGGPDPSP 91
           VRRG+PLSLSISISGG+ETYKDSP+NGERTGNSPALESGG AVRIVVWRSVLCGGP PSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74

[Close]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Match: A0A0P1A454_9STRA (Atp synthase subunit beta OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.600e-27
Identity = 76/108 (70.37%), Postives = 80/108 (74.07%), Query Frame = 1


		  
Query: 275 GRWSWKSKSAKECVTTHLPNQLAPKMDGAE---ARKGSRQNGSVTSGKGLALRAGHGGPS 334
           G   WKS +A+  V+   P  L    D       RKGSRQNGSVTSGKGLALRAGHGGP 
Sbjct: 214 GSSGWKS-TARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAGHGGPC 273

Query: 335 PEPVGCRRTARAALVARAGRRVPAGGRTGNGSFGGLPRASNSQLRTGS 380
           PEPVGCR TARAA  ARAG RVPAGGRTGNG FGGLPRASNSQLRTG+
Sbjct: 274 PEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGT 320

[Close]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Match: A0A0V0W141_9BILA (Uncharacterized protein OS=Trichinella sp. T6 GN=T06_12733 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.500e-25
Identity = 75/124 (60.48%), Postives = 82/124 (66.13%), Query Frame = 1


		  
Query: 307 KGSRQNGSVTSGKGLALRAGHGGPSPEPVGCRR-TARAALVARAGRRVPAGGRTGNGSFG 366
           KGSRQNGSVTS +GLALRAG       P+G     + A L  R  R  P           
Sbjct: 365 KGSRQNGSVTSEQGLALRAG-------PIGLSVFESEAELADRPARAEP--------ELR 424

Query: 367 GLPRASNSQLRTGSQMPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLS 426
           G P       R GSQMPRHLISDA+EWIN+IP+VP+YY AKPQPRERAWQNQRGKKTLLS
Sbjct: 425 GCPFTCTD--RFGSQMPRHLISDAYEWINKIPSVPIYYLAKPQPRERAWQNQRGKKTLLS 471

Query: 427 LTLV 430
           LTLV
Sbjct: 485 LTLV 471

The following BLAST results are available for this feature:

BLAST of Spo16598.1 vs. NCBI nr
BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
BLAST of Spo16598.1 vs. ExPASy Swiss-Prot
BLAST of Spo16598.1 vs. TAIR (Arabidopsis)

BLAST of Spo16598.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|870767542\|gb\|KMS65341.1\|	5.6e-29	89.1	hypothetical protein BVRB_0369...	[more]
gi\|953504095\|emb\|CEG35068.1\|	5.2e-27	70.3	atp synthase subunit beta [Pla...	[more]
gi\|954277581\|gb\|KRX69487.1\|	1.1e-24	60.4	hypothetical protein T06_12733...	[more]
gi\|303291422\|ref\|XP_003064996.1\|	9.2e-24	100.	predicted protein [Micromonas ...	[more]
gi\|961389434\|emb\|CUU98466.1\|	1.2e-23	66.0	hypothetical transcript [Hymen...	[more]

BLAST of Spo16598.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
M1D9E9_SOLTU	2.6e-41	88.0	Uncharacterized protein OS=Sol...	[more]
M1DS60_SOLTU	1.0e-37	64.4	Uncharacterized protein OS=Sol...	[more]
A0A0J7YP30_BETVU	3.9e-29	89.1	Uncharacterized protein (Fragm...	[more]
A0A0P1A454_9STRA	3.6e-27	70.3	Atp synthase subunit beta OS=P...	[more]
A0A0V0W141_9BILA	7.5e-25	60.4	Uncharacterized protein OS=Tri...	[more]

BLAST of Spo16598.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo16598.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33187	FAMILY NOT NAMED	coord: 376..435 score: 2.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0048825	cotyledon development
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009611	response to wounding
biological_process	GO:0016246	RNA interference
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0006417	regulation of translation
biological_process	GO:0019048	modulation by virus of host morphology or physiology
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0009409	response to cold
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0000932	P-body
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0050661	NADP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03315	0.83	Barchart \| Table
Spo20549	0.78	Barchart \| Table
Spo17898	0.72	Barchart \| Table
Spo22215	0.72	Barchart \| Table
Spo08258	0.72	Barchart \| Table
Spo12500	0.70	Barchart \| Table
Spo23622	0.69	Barchart \| Table
Spo14548	0.69	Barchart \| Table
Spo02397	0.68	Barchart \| Table
Spo14404	0.68	Barchart \| Table
Spo25306	0.67	Barchart \| Table
Spo05909	0.67	Barchart \| Table
Spo06318	0.67	Barchart \| Table
Spo11122	0.67	Barchart \| Table
Spo12224	0.67	Barchart \| Table
Spo17662	0.67	Barchart \| Table
Spo22939	0.67	Barchart \| Table
Spo15994	0.66	Barchart \| Table
Spo05064	0.66	Barchart \| Table
Spo09711	0.66	Barchart \| Table
Spo21082	0.66	Barchart \| Table
Spo19236	0.66	Barchart \| Table
Spo16894	0.65	Barchart \| Table
Spo18144	0.65	Barchart \| Table