Spo26262 (gene)

Overview
NameSpo26262
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00510 : 280105 .. 283563 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATAATTTTGGTGGGAATGGTAGTGGGGCCAAAATCCCAGATTGAGCGTGTACAACGGTTTTGATGTAATGGCAGTAGTAGTAGTAGTGCATTCACTCTCTTACTACACCACACCACAATTTATTTCTGTTTCTTATTTCTAGAGGGAGGTCATATGATATTGCCGGGTGACCCAAATGTGTCGAGTAATCGAGGGCCGCCTTGAAAAATAAGACCCGATTTGATGTACTATATAACATTTAGGTTGCACCGGGTCGGGCTGTTGGGGACGGGGTAAAAAACAGAGTATAACACGTTATGGATAGAGGGATAAAAGGTTAATCCTAAGGGTCGGTAAAAGTTTGTTTATTCTGACCATTACGAGCCCTTAAAGTAGCACCCTAACTATAAAAAGTACTACAAGAGGTATGTACCACCACCTAAAACGGATCCTCGACAATCGGGCATGGGTATGGACCTATGATGCACAGACACTTTCAAAAATATAAATTAACCGTTTCCAAAACGTGCCAGACACACCGACACTCGGAAACATAGACAACCGAGCTTATTACCTTATGATACCAAACTTTGTTTTTCCCGTTTTTCCGTATCCGTGTCCCATGTCCGTGCAACTTAGGTATGGACACTTCGACATTTCAATTTGGACAATCATGATTTTTTTCACAAAATAGCTGTGTCGGATACTTGGACATGTATCCATGTCCGATATGGGTATCCAAATCCCGGTAACATGTGTAGTAAGACATTAATTGATCCCCAAAATCAACTAGGAGCTTGATTCTCTCTATAGGAAAACAATGATATATACGGAGTAAGGTACACTTAGTATAAGGTATTTTTGAGTTAGTTAAAATTGTACATCAAACCTACGATAGTGACAAACTGACAAACAGGTACCCTTTGAAGAGCACATGCTTGACTTGCCGAAAGAAAACTAGTACTCCCTCCGTCCCGGAATATTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCATATTAACCCACCTACCCCTACTCCATACAAAAAATAATTAAAAATTCAATCCCTACTCTCCCCCAACCCCACCCCTTTACATATTTTCCACTAACTACAATAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTCCCTTAAACTCTGTGCCGGTCAAACCGGGTCGAGTATTCCGGGACGGAGGGAGTATCAATTAGAAATTTCAATTGTGCTTTTTCATACTCTTTCTTTTCTCTCATTCCTTTCTTTTCCTTTCCTTTTGTTATACCAAACGACCTATAGTACTGTCTTAATAAACTGCAACTGATTGGTGATGTTTGGATGATTTCACAACACTTTTAGCATTTCAAAATGTCCAGAATTTTTTGGGTTTCACCAAAACCTATTTTCTGGAATAAACAGAACACAAATATAGTTTGCATATCTAGAAAACACAAACGGGAGCCTCTGCTGTTGTGCACATAAATTTTTATAGGTAAAAGCAACATACACATGCTGCACATTTCTGCTAAATAATTGAGATANTGTGCACATAAATTTTTATAGGTAAAAGCAACATACACATGCTGCACATTTCTGCTAAATAATTAAGATACATATAAATTATAATGTCATAAAAGATTTAAGATACATATAAATTATAATGTCATAAAAGATAGTAACGTTTTTTTAGGGTGACACCCATGGCTCCAGGGATCGAATCCCGTTTACATCACCGCCCTTTATGAACTCCATATATTAATGATGAAANGCTCCAGGGATCGAATCCCGTTTACATCACCGCCCTTTATGAACTCCATATATTAATGATGAAATAATTCGCCGAAATTAGTCATTAAATGTCAATAAGGCTCATTTAGTAATTATTTCCAAAGGTTAAATAGTAGTTAAAAGTTTTTACAAACAGGAGTCTAAAGAAACTTCAAAAGCAAGATAATTATAAGGTTTCAAAATCATTATTATTTAGATATGATCTGAGATAATATATGGCCCATTTTTTTTTGAAAATTCAAGGCATGCTTTAAACCCCACTGGAATACCACTAGCTTTCATTGTGGTACCAACATTATAATGGTACTATAGTTTCACAGGACATAATAATGTTCAGGGATTGAAAAAGCAGGTAACATAGAGGTGTGGTTAGTGGAAGGAAAATGCAGTCAGTATTTATTCACCATTTTAGGCAAAAAAAAATGTTTTTATAAAAAGTAAGAAGCAAAAATTCCAACTTAGTGCAGTAATAATACAGGAAAAGAAAGCATTGATCTAATTCATCGTCAAGAAGATATTGACCATTCTTTCTCCAGTTTCTGACAAAAGAATTTTGTTACCTAGCCAACAGCTGGTGTAACAATTAGGCCCTAAATGGAAAATAATCTACTTCCTCCGTCATTGAATCAGTTCTCGCGTTGATAGTGTAATTCAAACTAGTAATGTAATACAAACTCACAAACTCTAAAGGTTTAGACTTTAGAGTCTCGGACCTAGATTTGTTAAGGTAAAATTGTTTACATCTGAACCTTTTCAAACCCGACAATTAGTAGCGTTGTTAGTAAGTTGCAGACTTGTAGGTAAGGTTAAACACGCCCCCCACTCATTTCACACATACTCGATCACACAAAGAGAGTCTCGGACCTAGATTGTTAAGGTAAAATTGTTTATATCTGAGCCTTCTCAAAACCCGGCCATTAGTAACGTTGTTAGTAAGTTGTAGACTTCTGTAGGTACGGTTAAACACGTCCCATACTCATTTCACACATACACACATCAAGAAAGTCTCGGACCTAGATTGGTAAGGTAATTTTTTTTACATCTGAACCTTCTCAAACCCGGTCATTAGTAGCGTTATTAGTAAGTCGTAGACTTGTAGGTAAGGTTAAACACGTCCCATACTCATTTCACACATACAGATTAAGAAAAGGAGCTACTTTTTTTGGGAGCTGTCAACGCATTATGGTTAAAGTTAAACTAAGTAAAACACAACTATCCAAATGGTGTGCTTTAAATAAGATTGGGGGACCTAAAGTGTGTGTCAGATCAAAAACCAAGACACAGGAATCTATTAAAGGCAAAGAGCTTAGCTGTCTGTTTATGTGCCTTAGAGAGGATGGAGGGAAGTAGTGTGCCTTCTAAATCATTGGAAATGGTGAGGCAGTAAGATTGAGCCCCCTGCCCTTCATTTGAATGCCTCTAATTTTTTTGTTTTGTTTTTGGAAGTAATAGAATAAAAACCTTCCTATCTAGGACAAAATACTAGAATAAACATACTCAACTACTCAAGTGTTGTTCATCACAGAAGACAAGAGTAATACATACAAAAAACCCCACAAATCATTCCAAGCAAAAAAAACAAAGAAGAGATATTGTATAA

mRNA sequence

ATGCCCATAATTTTGGTGGGAATGGTAGTGGGGCCAAAATCCCAGATTGAGCGTGTACAACGGAATCTATTAAAGGCAAAGAGCTTAGCTGTCTGTTTATGTGCCTTAGAGAGGATGGAGGGAAGTAGTGTGCCTTCTAAATCATTGGAAATGAATAAACATACTCAACTACTCAAGTGTTGTTCATCACAGAAGACAAGAGTAATACATACAAAAAACCCCACAAATCATTCCAAGCAAAAAAAACAAAGAAGAGATATTGTATAA

Coding sequence (CDS)

ATGCCCATAATTTTGGTGGGAATGGTAGTGGGGCCAAAATCCCAGATTGAGCGTGTACAACGGAATCTATTAAAGGCAAAGAGCTTAGCTGTCTGTTTATGTGCCTTAGAGAGGATGGAGGGAAGTAGTGTGCCTTCTAAATCATTGGAAATGAATAAACATACTCAACTACTCAAGTGTTGTTCATCACAGAAGACAAGAGTAATACATACAAAAAACCCCACAAATCATTCCAAGCAAAAAAAACAAAGAAGAGATATTGTATAA

Protein sequence

MPIILVGMVVGPKSQIERVQRNLLKAKSLAVCLCALERMEGSSVPSKSLEMNKHTQLLKCCSSQKTRVIHTKNPTNHSKQKKQRRDIV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26262.1Spo26262.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo26262.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26262.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26262.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26262.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0009926 auxin polar transport
biological_process GO:0000741 karyogamy
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009640 photomorphogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000338 protein deneddylation
biological_process GO:0051301 cell division
biological_process GO:0016579 protein deubiquitination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009909 regulation of flower development
biological_process GO:0010212 response to ionizing radiation
biological_process GO:0031125 rRNA 3'-end processing
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0016311 dephosphorylation
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0006810 transport
biological_process GO:0050789 regulation of biological process
biological_process GO:0048511 rhythmic process
biological_process GO:0048825 cotyledon development
biological_process GO:0016571 histone methylation
biological_process GO:0010015 root morphogenesis
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008361 regulation of cell size
biological_process GO:0007020 microtubule nucleation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0007389 pattern specification process
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0051604 protein maturation
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
cellular_component GO:0005622 intracellular
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0097157 pre-mRNA intronic binding
RNA-Seq Expression