Spo17249 (gene) | SpinachBase

Overview


Name	Spo17249
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	S1 ribosomal protein
Location	SpoScf_00573 : 135629 .. 136501 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGATTATTGGAACTTTCTCGTAGGGTTACTCCCGCTTCTCTTCTCAAACCCACCCTTCCTCCACCCATTTCCACCACCTCCTCCTCCGCTTTCTCCACCGTGCTCCACCACCAGAACTCGAATCTTCTCTCCCATCATGGACTTGCAATCGGGGCGATGGACTCAAAACCCTCGCAAAGCCCTAACATTTTACCCAGAAATGCTGGAAAAAGTCGACTTTATTCTTCAGCATCGGAATACTCTGGTCCAAAGCACAGCGCTTACATGAATCAATTATATCCAAAGTCAAATTCAAGCTTCAAATTAAGCAGCGGAAATTCATTGCAAGCGAATATCGTTCGATTAAGTGAGGAAGTATTTTTGGTTGATTCCGGAATAGGAACCCCTAGAATTTGCCTACAAGACGAGCTAATCGGGGTGAAAAACAAGGAGAAAATCAGATTCGAAAACCGGGTCGGATTCCTGGACTTAGTTACGGGTGAATCCCATATAAACAAGCAGATTCTAGAGAGGTTTTTCATCGATTTAGTTGCTGGAGATTCGACGGCGAAAGAGCGCGCAACCGAGAGGTTTAACGATTTGGTTGGGGGGTCGGCGGATGTGAATGCTGTTGCTGCCGGTGAACCACTGCTTGTTCTTCCAAGAAGATACCGGCAGAAGCGTGCTTGGATGGAGTTGAAAAATAAATACCGATCGAATTCGAATGTGAAAGGGTTTATTGTGGGGAAAATTAGAGGAGGTTATTCGGTTGCTATTGCTGGGTTTGTTGCATTTCTTCCATTTCGTTCTAGAAGTACAAGTTTGAGAAAAGATCTTTTTCTTATTGAGAAAATTAACCTCAAAAATGGGAATATTGTGGTCGCGTAA

mRNA sequence

ATGAGCAGATTATTGGAACTTTCTCGTAGGGTTACTCCCGCTTCTCTTCTCAAACCCACCCTTCCTCCACCCATTTCCACCACCTCCTCCTCCGCTTTCTCCACCGTGCTCCACCACCAGAACTCGAATCTTCTCTCCCATCATGGACTTGCAATCGGGGCGATGGACTCAAAACCCTCGCAAAGCCCTAACATTTTACCCAGAAATGCTGGAAAAAGTCGACTTTATTCTTCAGCATCGGAATACTCTGGTCCAAAGCACAGCGCTTACATGAATCAATTATATCCAAAGTCAAATTCAAGCTTCAAATTAAGCAGCGGAAATTCATTGCAAGCGAATATCGTTCGATTAAGTGAGGAAGTATTTTTGGTTGATTCCGGAATAGGAACCCCTAGAATTTGCCTACAAGACGAGCTAATCGGGGTGAAAAACAAGGAGAAAATCAGATTCGAAAACCGGGTCGGATTCCTGGACTTAGTTACGGGTGAATCCCATATAAACAAGCAGATTCTAGAGAGGTTTTTCATCGATTTAGTTGCTGGAGATTCGACGGCGAAAGAGCGCGCAACCGAGAGGTTTAACGATTTGGTTGGGGGGTCGGCGGATGTGAATGCTGTTGCTGCCGGTGAACCACTGCTTGTTCTTCCAAGAAGATACCGGCAGAAGCGTGCTTGGATGGAGTTGAAAAATAAATACCGATCGAATTCGAATGTGAAAGGGTTTATTGTGGGGAAAATTAGAGGAGGTTATTCGGTTGCTATTGCTGGGTTTGTTGCATTTCTTCCATTTCGTTCTAGAAGTACAAGTTTGAGAAAAGATCTTTTTCTTATTGAGAAAATTAACCTCAAAAATGGGAATATTGTGGTCGCGTAA

Coding sequence (CDS)

ATGAGCAGATTATTGGAACTTTCTCGTAGGGTTACTCCCGCTTCTCTTCTCAAACCCACCCTTCCTCCACCCATTTCCACCACCTCCTCCTCCGCTTTCTCCACCGTGCTCCACCACCAGAACTCGAATCTTCTCTCCCATCATGGACTTGCAATCGGGGCGATGGACTCAAAACCCTCGCAAAGCCCTAACATTTTACCCAGAAATGCTGGAAAAAGTCGACTTTATTCTTCAGCATCGGAATACTCTGGTCCAAAGCACAGCGCTTACATGAATCAATTATATCCAAAGTCAAATTCAAGCTTCAAATTAAGCAGCGGAAATTCATTGCAAGCGAATATCGTTCGATTAAGTGAGGAAGTATTTTTGGTTGATTCCGGAATAGGAACCCCTAGAATTTGCCTACAAGACGAGCTAATCGGGGTGAAAAACAAGGAGAAAATCAGATTCGAAAACCGGGTCGGATTCCTGGACTTAGTTACGGGTGAATCCCATATAAACAAGCAGATTCTAGAGAGGTTTTTCATCGATTTAGTTGCTGGAGATTCGACGGCGAAAGAGCGCGCAACCGAGAGGTTTAACGATTTGGTTGGGGGGTCGGCGGATGTGAATGCTGTTGCTGCCGGTGAACCACTGCTTGTTCTTCCAAGAAGATACCGGCAGAAGCGTGCTTGGATGGAGTTGAAAAATAAATACCGATCGAATTCGAATGTGAAAGGGTTTATTGTGGGGAAAATTAGAGGAGGTTATTCGGTTGCTATTGCTGGGTTTGTTGCATTTCTTCCATTTCGTTCTAGAAGTACAAGTTTGAGAAAAGATCTTTTTCTTATTGAGAAAATTAACCTCAAAAATGGGAATATTGTGGTCGCGTAA

Protein sequence

MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPSQSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17249.1	Spo17249.1	mRNA

Homology

[Close]

BLAST of Spo17249.1 vs. NCBI nr
Match: gi|902225349|gb|KNA20040.1| (hypothetical protein SOVF_056000 [Spinacia oleracea])

HSP 1 Score: 555.4 bits (1430), Expect = 5.700e-155
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1

		  
Query: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60
           MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS
Sbjct: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60

Query: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120
           QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE
Sbjct: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120

Query: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180
           VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA
Sbjct: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180

Query: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240
           GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG
Sbjct: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240

Query: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 291
           FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA
Sbjct: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 290

[Close]

BLAST of Spo17249.1 vs. NCBI nr
Match: gi|902160946|gb|KNA06498.1| (hypothetical protein SOVF_180540 [Spinacia oleracea])

HSP 1 Score: 505.0 bits (1299), Expect = 8.800e-140
Identity = 266/290 (91.72%), Postives = 274/290 (94.48%), Query Frame = 1

		  
Query: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60
           MSRLLELSRRVTPASLLKPTLPPPISTTSSS   TVLHH+++NLLSH+GLAIG+MDSKPS
Sbjct: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSS---TVLHHRSANLLSHYGLAIGSMDSKPS 60

Query: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120
           QSPNILPRNAGK RLYSS SEYSG KHSAYMNQLYP SNSSFKLSSGNSLQANIVRLSEE
Sbjct: 61  QSPNILPRNAGKIRLYSSTSEYSGSKHSAYMNQLYPMSNSSFKLSSGNSLQANIVRLSEE 120

Query: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180
           VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA
Sbjct: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180

Query: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240
           GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSN  VKG
Sbjct: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNLKVKG 240

Query: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 291
           FIVGK+RGGYSVAIAGFVAFLPFRS   SL  DLFLIEKIN K GNI+V+
Sbjct: 241 FIVGKVRGGYSVAIAGFVAFLPFRSSQISLTNDLFLIEKINHKTGNIMVS 287

[Close]

BLAST of Spo17249.1 vs. NCBI nr
Match: gi|870868635|gb|KMT19438.1| (hypothetical protein BVRB_1g010680 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 298.1 bits (762), Expect = 1.600e-77
Identity = 152/201 (75.62%), Postives = 176/201 (87.56%), Query Frame = 1

		  
Query: 91  MNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEKIRF 150
           MNQL+P+SNSSFKLSSGN+L +++VRLSE+VFLVDSGIGTPR CLQDELIG KN +KIRF
Sbjct: 1   MNQLFPRSNSSFKLSSGNALNSDVVRLSEDVFLVDSGIGTPRTCLQDELIGAKNTQKIRF 60

Query: 151 ENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVAAGE 210
           ENRVGFLDLV GES INKQILERFFIDLVAGDSTAKERAT RFNDLVGGSADV+ V+AGE
Sbjct: 61  ENRVGFLDLVAGESLINKQILERFFIDLVAGDSTAKERATARFNDLVGGSADVDVVSAGE 120

Query: 211 PLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFR--SRST 270
           PLLVLPRRYRQKR  MEL   +R+NS VKGF+VG++R G+ VAIAGFVAFLP+R  +R +
Sbjct: 121 PLLVLPRRYRQKRVQMELLKIWRTNSQVKGFVVGRVRSGFCVAIAGFVAFLPYRPATRGS 180

Query: 271 SLRKDLFLIEKINLKNGNIVV 290
            +  + F+IE +NLK+GNI V
Sbjct: 181 RILNERFIIESMNLKSGNIRV 201

[Close]

BLAST of Spo17249.1 vs. NCBI nr
Match: gi|870841232|gb|KMS95078.1| (hypothetical protein BVRB_012680 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 296.2 bits (757), Expect = 6.200e-77
Identity = 151/201 (75.12%), Postives = 176/201 (87.56%), Query Frame = 1

		  
Query: 91  MNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEKIRF 150
           MNQL+P+SNSSFKLSSGN+L +++VRLSE+VFLVDSGIGTPR CLQDELIG K+ +KIRF
Sbjct: 1   MNQLFPRSNSSFKLSSGNALNSDVVRLSEDVFLVDSGIGTPRTCLQDELIGAKDTQKIRF 60

Query: 151 ENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVAAGE 210
           ENRVGFLDLV GES INKQILERFFIDLVAGDSTAKERAT RFNDLVGGSADV+ V+AGE
Sbjct: 61  ENRVGFLDLVAGESLINKQILERFFIDLVAGDSTAKERATARFNDLVGGSADVDVVSAGE 120

Query: 211 PLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFR--SRST 270
           PLLVLPRRYRQKR  MEL   +R+NS VKGF+VG++R G+ VAIAGFVAFLP+R  +R +
Sbjct: 121 PLLVLPRRYRQKRVQMELLKIWRTNSQVKGFVVGRVRSGFCVAIAGFVAFLPYRPATRGS 180

Query: 271 SLRKDLFLIEKINLKNGNIVV 290
            +  + F+IE +NLK+GNI V
Sbjct: 181 RILNERFIIESMNLKSGNIRV 201

[Close]

BLAST of Spo17249.1 vs. NCBI nr
Match: gi|316996018|dbj|BAD83485.2| (hypothetical protein (mitochondrion) [Nicotiana tabacum])

HSP 1 Score: 254.6 bits (649), Expect = 2.100e-64
Identity = 130/202 (64.36%), Postives = 157/202 (77.72%), Query Frame = 1

		  
Query: 88  SAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEK 147
           S Y+++L+P+SNSSF L SGN+LQ+ ++RL EE+FLVD+G+GTPRIC+QDEL GV     
Sbjct: 18  SIYLSRLFPRSNSSFFLCSGNALQSEVLRLREEMFLVDAGLGTPRICMQDELTGVPINRA 77

Query: 148 IRFENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVA 207
            RFEN+VGFLDLV GES I +QILERFFIDLVAG+S  KERA  RFNDLVG +     V 
Sbjct: 78  TRFENKVGFLDLVAGESLIKEQILERFFIDLVAGESLIKERAAARFNDLVGST----DVV 137

Query: 208 AGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFRSRS 267
           AGEPLL+LPRR+RQ RAWMEL   +R+N+ VKGFI+ K++GGYSVAIAGF+ FLPFR R 
Sbjct: 138 AGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIEKVKGGYSVAIAGFITFLPFRRRR 197

Query: 268 TSLRKDLFLIEKINLKNGNIVV 290
             +  D F IE IN K  NIVV
Sbjct: 198 KRISNDRFTIENINPKKTNIVV 215

[Close]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKM4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056000 PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 4.000e-155
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1

		  
Query: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60
           MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS
Sbjct: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60

Query: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120
           QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE
Sbjct: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120

Query: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180
           VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA
Sbjct: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180

Query: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240
           GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG
Sbjct: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240

Query: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 291
           FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA
Sbjct: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 290

[Close]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIH5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_180540 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 6.100e-140
Identity = 266/290 (91.72%), Postives = 274/290 (94.48%), Query Frame = 1

		  
Query: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSSAFSTVLHHQNSNLLSHHGLAIGAMDSKPS 60
           MSRLLELSRRVTPASLLKPTLPPPISTTSSS   TVLHH+++NLLSH+GLAIG+MDSKPS
Sbjct: 1   MSRLLELSRRVTPASLLKPTLPPPISTTSSS---TVLHHRSANLLSHYGLAIGSMDSKPS 60

Query: 61  QSPNILPRNAGKSRLYSSASEYSGPKHSAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEE 120
           QSPNILPRNAGK RLYSS SEYSG KHSAYMNQLYP SNSSFKLSSGNSLQANIVRLSEE
Sbjct: 61  QSPNILPRNAGKIRLYSSTSEYSGSKHSAYMNQLYPMSNSSFKLSSGNSLQANIVRLSEE 120

Query: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180
           VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA
Sbjct: 121 VFLVDSGIGTPRICLQDELIGVKNKEKIRFENRVGFLDLVTGESHINKQILERFFIDLVA 180

Query: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKG 240
           GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSN  VKG
Sbjct: 181 GDSTAKERATERFNDLVGGSADVNAVAAGEPLLVLPRRYRQKRAWMELKNKYRSNLKVKG 240

Query: 241 FIVGKIRGGYSVAIAGFVAFLPFRSRSTSLRKDLFLIEKINLKNGNIVVA 291
           FIVGK+RGGYSVAIAGFVAFLPFRS   SL  DLFLIEKIN K GNI+V+
Sbjct: 241 FIVGKVRGGYSVAIAGFVAFLPFRSSQISLTNDLFLIEKINHKTGNIMVS 287

[Close]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D5H4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g010680 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.100e-77
Identity = 152/201 (75.62%), Postives = 176/201 (87.56%), Query Frame = 1

		  
Query: 91  MNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEKIRF 150
           MNQL+P+SNSSFKLSSGN+L +++VRLSE+VFLVDSGIGTPR CLQDELIG KN +KIRF
Sbjct: 1   MNQLFPRSNSSFKLSSGNALNSDVVRLSEDVFLVDSGIGTPRTCLQDELIGAKNTQKIRF 60

Query: 151 ENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVAAGE 210
           ENRVGFLDLV GES INKQILERFFIDLVAGDSTAKERAT RFNDLVGGSADV+ V+AGE
Sbjct: 61  ENRVGFLDLVAGESLINKQILERFFIDLVAGDSTAKERATARFNDLVGGSADVDVVSAGE 120

Query: 211 PLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFR--SRST 270
           PLLVLPRRYRQKR  MEL   +R+NS VKGF+VG++R G+ VAIAGFVAFLP+R  +R +
Sbjct: 121 PLLVLPRRYRQKRVQMELLKIWRTNSQVKGFVVGRVRSGFCVAIAGFVAFLPYRPATRGS 180

Query: 271 SLRKDLFLIEKINLKNGNIVV 290
            +  + F+IE +NLK+GNI V
Sbjct: 181 RILNERFIIESMNLKSGNIRV 201

[Close]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5C4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012680 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.300e-77
Identity = 151/201 (75.12%), Postives = 176/201 (87.56%), Query Frame = 1

		  
Query: 91  MNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEKIRF 150
           MNQL+P+SNSSFKLSSGN+L +++VRLSE+VFLVDSGIGTPR CLQDELIG K+ +KIRF
Sbjct: 1   MNQLFPRSNSSFKLSSGNALNSDVVRLSEDVFLVDSGIGTPRTCLQDELIGAKDTQKIRF 60

Query: 151 ENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVAAGE 210
           ENRVGFLDLV GES INKQILERFFIDLVAGDSTAKERAT RFNDLVGGSADV+ V+AGE
Sbjct: 61  ENRVGFLDLVAGESLINKQILERFFIDLVAGDSTAKERATARFNDLVGGSADVDVVSAGE 120

Query: 211 PLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFR--SRST 270
           PLLVLPRRYRQKR  MEL   +R+NS VKGF+VG++R G+ VAIAGFVAFLP+R  +R +
Sbjct: 121 PLLVLPRRYRQKRVQMELLKIWRTNSQVKGFVVGRVRSGFCVAIAGFVAFLPYRPATRGS 180

Query: 271 SLRKDLFLIEKINLKNGNIVV 290
            +  + F+IE +NLK+GNI V
Sbjct: 181 RILNERFIIESMNLKSGNIRV 201

[Close]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Match: Q5M9Z3_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf216 PE=4 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 1.400e-64
Identity = 130/202 (64.36%), Postives = 157/202 (77.72%), Query Frame = 1

		  
Query: 88  SAYMNQLYPKSNSSFKLSSGNSLQANIVRLSEEVFLVDSGIGTPRICLQDELIGVKNKEK 147
           S Y+++L+P+SNSSF L SGN+LQ+ ++RL EE+FLVD+G+GTPRIC+QDEL GV     
Sbjct: 18  SIYLSRLFPRSNSSFFLCSGNALQSEVLRLREEMFLVDAGLGTPRICMQDELTGVPINRA 77

Query: 148 IRFENRVGFLDLVTGESHINKQILERFFIDLVAGDSTAKERATERFNDLVGGSADVNAVA 207
            RFEN+VGFLDLV GES I +QILERFFIDLVAG+S  KERA  RFNDLVG +     V 
Sbjct: 78  TRFENKVGFLDLVAGESLIKEQILERFFIDLVAGESLIKERAAARFNDLVGST----DVV 137

Query: 208 AGEPLLVLPRRYRQKRAWMELKNKYRSNSNVKGFIVGKIRGGYSVAIAGFVAFLPFRSRS 267
           AGEPLL+LPRR+RQ RAWMEL   +R+N+ VKGFI+ K++GGYSVAIAGF+ FLPFR R 
Sbjct: 138 AGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIEKVKGGYSVAIAGFITFLPFRRRR 197

Query: 268 TSLRKDLFLIEKINLKNGNIVV 290
             +  D F IE IN K  NIVV
Sbjct: 198 KRISNDRFTIENINPKKTNIVV 215

[Close]

BLAST of Spo17249.1 vs. ExPASy Swiss-Prot
Match: RT01_MARPO (Ribosomal protein S1, mitochondrial OS=Marchantia polymorpha GN=RPS1 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-8
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1

		  
Query: 209 GEPLLVLPR----RYRQKRAWMELKNKYRSNSN-VKGFIVGKIRGGYSVAIAGFVAFLP- 268
           GEP ++LP+    + ++K  W+EL   +RS+ N VKGFI+  ++GGY+VAIAG++AFLP 
Sbjct: 73  GEPKMLLPKPLEIKCKRKLVWIELTKIWRSDQNLVKGFILNSVKGGYAVAIAGYIAFLPK 132

Query: 269 --FRSRSTSLRK-DLFLIEKINLKNGNIVV 290
              RSR     +  +F I  +  K  NIVV
Sbjct: 133 SLLRSRKVFYSQWRIFSILNMKPKISNIVV 162

The following BLAST results are available for this feature:

BLAST of Spo17249.1 vs. NCBI nr
BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
BLAST of Spo17249.1 vs. ExPASy Swiss-Prot
BLAST of Spo17249.1 vs. TAIR (Arabidopsis)

BLAST of Spo17249.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902225349\|gb\|KNA20040.1\|	5.7e-155	100.	hypothetical protein SOVF_0560...	[more]
gi\|902160946\|gb\|KNA06498.1\|	8.8e-140	91.7	hypothetical protein SOVF_1805...	[more]
gi\|870868635\|gb\|KMT19438.1\|	1.6e-77	75.6	hypothetical protein BVRB_1g01...	[more]
gi\|870841232\|gb\|KMS95078.1\|	6.2e-77	75.1	hypothetical protein BVRB_0126...	[more]
gi\|316996018\|dbj\|BAD83485.2\|	2.1e-64	64.3	hypothetical protein (mitochon...	[more]

BLAST of Spo17249.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RKM4_SPIOL	4.0e-155	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QIH5_SPIOL	6.1e-140	91.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8D5H4_BETVU	1.1e-77	75.6	Uncharacterized protein OS=Bet...	[more]
A0A0J8B5C4_BETVU	4.3e-77	75.1	Uncharacterized protein OS=Bet...	[more]
Q5M9Z3_TOBAC	1.4e-64	64.3	Uncharacterized protein OS=Nic...	[more]

BLAST of Spo17249.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
RT01_MARPO	1.2e-8	43.3	Ribosomal protein S1, mitochon...	[more]

BLAST of Spo17249.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006810	transport
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0060003	copper ion export
biological_process	GO:0000914	phragmoplast assembly
biological_process	GO:0010342	endosperm cellularization
biological_process	GO:0008152	metabolic process
biological_process	GO:0006621	protein retention in ER lumen
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0009790	embryo development
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0046520	sphingoid biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
biological_process	GO:0006412	translation
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0006144	purine nucleobase metabolic process
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
cellular_component	GO:0044464	cell part
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0018454	acetoacetyl-CoA reductase activity
molecular_function	GO:0045703	ketoreductase activity
molecular_function	GO:0004017	adenylate kinase activity
molecular_function	GO:0008430	selenium binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0046923	ER retention sequence binding
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004008	copper-exporting ATPase activity
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0003743	translation initiation factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18400	0.74	Barchart \| Table
Spo01305	0.73	Barchart \| Table
Spo11739	0.72	Barchart \| Table
Spo04653	0.72	Barchart \| Table
Spo10235	0.70	Barchart \| Table
Spo23721	0.70	Barchart \| Table
Spo09536	0.69	Barchart \| Table
Spo21660	0.69	Barchart \| Table
Spo12228	0.69	Barchart \| Table
Spo12370	0.69	Barchart \| Table
Spo24016	0.68	Barchart \| Table
Spo23363	0.68	Barchart \| Table
Spo07306	0.68	Barchart \| Table
Spo02573	0.68	Barchart \| Table
Spo25403	0.67	Barchart \| Table
Spo15461	0.67	Barchart \| Table
Spo19288	0.67	Barchart \| Table
Spo05942	0.66	Barchart \| Table
Spo01923	0.66	Barchart \| Table
Spo24325	0.66	Barchart \| Table
Spo20387	0.65	Barchart \| Table
Spo00872	0.65	Barchart \| Table
Spo18958	0.65	Barchart \| Table
Spo16955	0.65	Barchart \| Table