Spo06537 (gene)

Overview
NameSpo06537
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00574 : 119128 .. 119899 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGGTAGAGTATGTTAAGGGTGATTAAACGAGTCATATGACTCTCATGTTGTAAGACTGAGGAAATAATAGACTTCACAAGTCTTTTTTTAAAAATGTGGATTGCTGTATTTTTATTTTCATTACTTCTTATTATCGTTTGTTGACCTAATAACATATTACATATCCATGTAAAAAAAAGGCACCCAAAAAGATGAAGAACCTAAACTATAAACAATTTTAAAAAATTCAATACAAGTAAAGTATATTAGGAGCATTTAAAAATTTTAAACTTTTGGCATTACTATGTTATCTTTAATTCCCATGGTCCAGCTTTACAGTTTAAAAAATTGACATTTTAGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

mRNA sequence

ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

Coding sequence (CDS)

ATGGCAAAGGCAACACAATCTGCTGCCGAAAAAGCGGTTCGTAAACTACAAGAAAACTTAAACTTTGATGTGGCCGACATTAATTACACTACATGTATGCATCAAAGAAAGAAGCGCCGTATTGCTGAAATTAAGTTGACCAAAGAAGAGATGAATTTTCTTGATTTAAAGCGCTACTACTTTCAAGAATGTGCTGAAAATAGATCACTAAAAGAACAACTGGCCAAATTGCTAAATAGGGATAACAAAGGATCTGGAAGGATGGAGAATGGGGACAGGGCAAGACATGCTCGATTCTTAAGGAAATGTATTATTACACAAAGGAGGAATAGACTAAAGGAACTTCCAAAAAAAAAACGGGAAACACTACCAGCAAGTGAGTCAACAAGGAATAATGGTAAGAAGTTATTAATATTTAAAATGCATTACCTATAA

Protein sequence

MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYYFQECAENRSLKEQLAKLLNRDNKGSGRMENGDRARHARFLRKCIITQRRNRLKELPKKKRETLPASESTRNNGKKLLIFKMHYL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06537.1Spo06537.1mRNA


Homology
[Close]
BLAST of Spo06537.1 vs. NCBI nr
Match: gi|902230534|gb|KNA21892.1| (hypothetical protein SOVF_039160 [Spinacia oleracea])

HSP 1 Score: 163.7 bits (413), Expect = 2.400e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 1   MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYY 60
           MAKATQSAAEKAVRKLQEN NFDVADINYTTCMHQRKKRRIAEIKLT+EEMNF+DLKRYY
Sbjct: 65  MAKATQSAAEKAVRKLQENFNFDVADINYTTCMHQRKKRRIAEIKLTREEMNFIDLKRYY 124

Query: 61  FQECAENRSLKEQLAKLLNRDNKGSG 87
           FQECAENRSLKEQL KLLNRDNKGSG
Sbjct: 125 FQECAENRSLKEQLVKLLNRDNKGSG 150
[Close]
BLAST of Spo06537.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSU0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_039160 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.700e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 1   MAKATQSAAEKAVRKLQENLNFDVADINYTTCMHQRKKRRIAEIKLTKEEMNFLDLKRYY 60
           MAKATQSAAEKAVRKLQEN NFDVADINYTTCMHQRKKRRIAEIKLT+EEMNF+DLKRYY
Sbjct: 65  MAKATQSAAEKAVRKLQENFNFDVADINYTTCMHQRKKRRIAEIKLTREEMNFIDLKRYY 124

Query: 61  FQECAENRSLKEQLAKLLNRDNKGSG 87
           FQECAENRSLKEQL KLLNRDNKGSG
Sbjct: 125 FQECAENRSLKEQLVKLLNRDNKGSG 150
The following BLAST results are available for this feature:
BLAST of Spo06537.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902230534|gb|KNA21892.1|2.4e-3795.3hypothetical protein SOVF_0391... [more]
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BLAST of Spo06537.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RSU0_SPIOL1.7e-3795.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06537.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06537.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0032482 Rab protein signal transduction
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0019003 GDP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo065350.85Barchart | Table
Spo065360.81Barchart | Table
Spo091620.67Barchart | Table
Spo103160.67Barchart | Table
Spo041040.65Barchart | Table
Spo264270.65Barchart | Table