Spo15761 (gene) | SpinachBase

Overview


Name	Spo15761
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00652 : 7159 .. 8219 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTCAATTTAGAGGGCATTTCTTTATTACACACAAGTTCTCAAACTCTATCTCTACCTCTCTACCCCTCGTGCCTTCCTTCACTCAGCTCTCTGCGTCTCCACTTAGCAAAAACCACCTGTTTTCCGCCGGACCCGAAGCAAACACTGGTGTTCCGACTTGTCTCAACGGAACTTCCACTAGGCCCACCACCGGTCCACCGTTCGACAAACTGACGCTCCACCAAGCCTTCCACCGGCCCACGGCAGGTATGAAAAGAATCCTCTGTCTCTTTTAATAATTCGTTTTTTGTTTTGGATTGAGGATTGAGATAATTTGGTCAACTTTTAATTGATAATTTGCTTAATTTTTTATTGATTATTGGTTGCTGAATTGATAAAAGTTTCAAGCTTGTTTATCAATTTGGTGAATTTTTTAATGCATTTCTATATTTTATTAATTTATTTAACATAATTATCTACTCATGTGGGTTAATTGAGTGACATTAGTTCGTTAATTAGTGTCTTAATTGGTTAAATTGTCAAATTGATATGTTAAACAGATTGAATTTGTTACTCGGTCGTTTTCGAAGTTTTTGTGTGAATTCGTTGCTGCAATCGTAGACTTGTTGTGGAATTGGAGTAGTCAAAGAGTGTATTCTGGCTGTTTTTCTCAATATATATTAATGTTGATAGAAATTGGAAGTTTTGGACATGATTGCTTTGGTCATTCGTCGAAAATGTTACCATAGATTGCTCCCTAGTTACAAAGATGTGCTCGTAAATTCATGTAGTTTTTGTTTGAATGGTTGATATTATGGAAGACAAAAATAAGATTGGTGTTAGCACCAGATTCTTGGTCTTCAATTACAAGTAGTATTGTTGTACTTGAGTTTCTTTTGAAGGTAAATTATTGTATGTTTTTCCCTTAGATAGTTGTTTATTGTATTATGAGATAAGTTTGTACACCTTTGAAAACTCCTATGAATCTTGATTGACCCCCCCAATTTTAAATTCTCTAGATTCACCATTGCCCGAGAGTCCCGGAAATGCAAGTCATGCAACAGTTCTTCCTTGA

mRNA sequence

ATGGATTTTCAATTTAGAGGGCATTTCTTTATTACACACAAGTTCTCAAACTCTATCTCTACCTCTCTACCCCTCGTGCCTTCCTTCACTCAGCTCTCTGCGTCTCCACTTAGCAAAAACCACCTGTTTTCCGCCGGACCCGAAGCAAACACTGGTGTTCCGACTTGTCTCAACGGAACTTCCACTAGGCCCACCACCGGTCCACCGTTCGACAAACTGACGCTCCACCAAGCCTTCCACCGGCCCACGGCAGATTCACCATTGCCCGAGAGTCCCGGAAATGCAAGTCATGCAACAGTTCTTCCTTGA

Coding sequence (CDS)

ATGGATTTTCAATTTAGAGGGCATTTCTTTATTACACACAAGTTCTCAAACTCTATCTCTACCTCTCTACCCCTCGTGCCTTCCTTCACTCAGCTCTCTGCGTCTCCACTTAGCAAAAACCACCTGTTTTCCGCCGGACCCGAAGCAAACACTGGTGTTCCGACTTGTCTCAACGGAACTTCCACTAGGCCCACCACCGGTCCACCGTTCGACAAACTGACGCTCCACCAAGCCTTCCACCGGCCCACGGCAGATTCACCATTGCCCGAGAGTCCCGGAAATGCAAGTCATGCAACAGTTCTTCCTTGA

Protein sequence

MDFQFRGHFFITHKFSNSISTSLPLVPSFTQLSASPLSKNHLFSAGPEANTGVPTCLNGTSTRPTTGPPFDKLTLHQAFHRPTADSPLPESPGNASHATVLP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15761.1	Spo15761.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo15761.1 vs. NCBI nr
BLAST of Spo15761.1 vs. UniProtKB/TrEMBL
BLAST of Spo15761.1 vs. ExPASy Swiss-Prot
BLAST of Spo15761.1 vs. TAIR (Arabidopsis)

BLAST of Spo15761.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15761.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15761.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15761.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0006121	mitochondrial electron transport, succinate to ubiquinone
biological_process	GO:0048575	short-day photoperiodism, flowering
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
biological_process	GO:0080119	ER body organization
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0070932	histone H3 deacetylation
biological_process	GO:0061647	histone H3-K9 modification
biological_process	GO:0070933	histone H4 deacetylation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0051301	cell division
biological_process	GO:0048825	cotyledon development
biological_process	GO:0006281	DNA repair
biological_process	GO:0009880	embryonic pattern specification
biological_process	GO:0019915	lipid storage
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0010072	primary shoot apical meristem specification
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0050826	response to freezing
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008284	positive regulation of cell proliferation
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0009845	seed germination
biological_process	GO:0006396	RNA processing
biological_process	GO:0032502	developmental process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045281	succinate dehydrogenase complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0030127	COPII vesicle coat
cellular_component	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0045254	pyruvate dehydrogenase complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0000118	histone deacetylase complex
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046970	NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function	GO:0046969	NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function	GO:0097372	NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function	GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05232	0.77	Barchart \| Table
Spo05415	0.75	Barchart \| Table
Spo10211	0.73	Barchart \| Table
Spo24416	0.72	Barchart \| Table
Spo09139	0.71	Barchart \| Table
Spo10553	0.70	Barchart \| Table
Spo07448	0.70	Barchart \| Table
Spo01403	0.70	Barchart \| Table
Spo09495	0.69	Barchart \| Table
Spo25206	0.68	Barchart \| Table
Spo03626	0.68	Barchart \| Table
Spo07853	0.68	Barchart \| Table
Spo07916	0.68	Barchart \| Table
Spo10565	0.68	Barchart \| Table
Spo13487	0.68	Barchart \| Table
Spo18221	0.68	Barchart \| Table
Spo22505	0.68	Barchart \| Table
Spo05090	0.67	Barchart \| Table
Spo22936	0.67	Barchart \| Table
Spo22939	0.67	Barchart \| Table
Spo15092	0.66	Barchart \| Table
Spo11643	0.66	Barchart \| Table
Spo06711	0.66	Barchart \| Table
Spo12084	0.65	Barchart \| Table
Spo10863	0.65	Barchart \| Table
Spo24001	0.65	Barchart \| Table