Spo01452.1 (mRNA)

Overview
NameSpo01452.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00900 : 125637 .. 129300 (-)
Sequence length1020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATGGGCTACTCTCGTAGTCTTACTCTACGTCTCTACTCCTACAACAAAATTTCGCCTCATTGTCTTCCTGTCTCTCTCACATCTTTCTTCTGAATAGCCTCTGAAATCGTGCAGCGTTGTCTTGAGCAAAGCAAAGCCTAAAGACCAGCTGCACACCCATTAACCTCCCTCCTAAGTCCTAAACCCTCTGCAAAACCACTCTTACATTACACAGAAAGCGCAAAACTACGCTATTTGGCTCATTCATTACTCTCACATTTTCTGTTTTCCAAATACCCATTAAACCAACCTTTATTAAATACATTACTCCCTAATAAGAAACAATCCCTTTGTCTCTCTCTCTTAGGGTTTGGAAATGGTGATTTTCGCAATTTCTAAACATGCCCATTTCTCCAGACCTAGTCAATTTCTCAATTTCTTTGAAACCCATCATTTTTTGGAGGTTTTAGCAAATGGGTTTGTGCCTAATTGGTAATTTCTTTCATCTTCTGTTCATATTTGAAAAAAAATTCAATTTTGAAGTGAATTATGTCATTTTTTTTGCTTTTAGTTCTCTTGTTATGCTTCTGTTTCTTTGGTTTTATTCTATGTGATTTTGTGAGAATTTTTTGAATTATGCTTGCTTCTTTGTTTAATACCAAGCAACTTTTTTCGGATGTTCATACCCTGCTTTTATGCTTCTCTATGTAGATTTCAAGTTATGAGATTGAACAAATTAATGCCAATGCCAACATTTTGATGTTTGCTTGCTTTTGGATGTTTATTGCCCTGCTTCTAGTAACTGAATGCATATTTTCTACTTTGTTTTGTCTTGTAATTAATTTACTTTTACATAATTCAAGGCAAAATTTTGACAAATTGCATGTCCGTCATAGGAGTATAAATTATTATTCAGGCCTCTATTGTGAATCTTCTCGTAATGTAGTACTATTTGTGTTTGTTGTGAAGTTCTCATATCAGACACGGTCACACGGATAGCTGATATCAAATCCGAAATCAATTTCAGATTATGCTTAAGCCCTTAATTTGATGTCCCGATACTCTTTTCGAAGCTACTACACATTTATCTAGTTTTGAAGAGTTAAATATTTCCCTTCATGGAAAAAAGTATACTCCGTAGTTTAAAAGATTCCAATTGGAACGTAATGTGGATATGCTACTAATAAATGTTTCTATGGAATTTGAGATTTTGAAAATGCATTATCTTTCATGACCTTGGTATCCTAATATTTTCCTTTCTTTATGTAAGGATTGTTTTTTATTTCAATTATGATCTCAATCTCTTTAACCAGTCCTTTGTACAACTAGTTTAGATACTTATGTTTTGGTGTTCGCTTTCTTGTTAATTTGTTAACGTTACTATTAGAGCATTTTTCTGCAATGACTCACACCATGTATCTGTCAATATAAATTAAACAATGATTTCAGTCGACTATTCCAACAATGCTAGTTTTCAAAGTTTGAGATTTAAGAAGATGCACCAAAAAACAAAGTGAAAAGTTCTCGTGCCTCTTTTCTATGCTGCATAAGTTCATATGAAATCATCTAGAGTCCTAAAAGGATGTGAAGAAAGAACTTGTGGTGGATCTCAAGCGGGCTAATTAAAAAGATGATCTGTGATAGTTATATTCTCTCATACTACAGAAAGTCAGTCAGTCAGTTTACCGAATCTTTTGGTCAATGTAGCTATTAGATCTTATTTAGTTGTAGGTCTTGCAAACAAAATCTGTTGCTAAATTAGATATGCAGTCTTGTGGTGATAATTAAATTTGGTTTGGCTTGGTTGTGATTTGGTCTGGGTATGAGTTCTGTTAGATTGTCAATCATCAGACTTTTGTGCCCAACATTGATATAGTCCTGGACTAGTTAGAATTTATGGGTAAAGGGCTAAGATGCTAAGATATGAGGGTATCTTAACCGACCTTTACCCTTTTGCAAGTCGCATACTTGGTTATTATTGTTGTGACAAGTAAGATCAATGTCTAGTATGGATTTGACAAGCTTCAAATTATTGTGATTTTAGGCATACGAGTAATATGGCAGGGTCAGGGGAGAATAATAACAGGGGTTAAGGGCTCAGGCGATATATGTTGGTGGAAATATAGTTTACTGAAGTACAATTATCTACTCCATTTTCTATCATTTTGTTATAACTGCCTATTACCTTAATGTTGGCTGGGAAATCTGAAAATGTTATTGCTCTGTATTCTGCCTAGGATGGAATTTTTGCAGTTTCTCTTGAAGTTCCTGTTTGTGATATGTGTTGCTTGCCCTGTGCTGAGTGTTCTTGTATGAGTAAAAAGAAAAGAAAAGTGTATGCATAATTCATCTTTGGGATGAAAGTATATTTTAGAATCCTAAACTAGCTTATGACATTGCAAAGAACTACGGCGTATATCTTGTATGAATTAGAAATTCTGATGCATTTATATAATAGTAGAACATATAATTCTGTCAGTCGTCACTCGTAGTTACCCATTATTGTCACCTCCTTCCGTTGCAATGAGAACTTGGGATTAGAATTGCATTTCATGGTCCTTTGTAAATTGTGTTGACATGATTATTGGACATGTTTCTAATTTTCCTTCCTGCTAATTTGTTTGAGTCATAGAAATGTCGTATTGTACTGTTTGATGCTTTCCCTATCAGCAAAGTCCTTATCACCGAGAGGCCTTAATCTAACTGATAAGAATACTTTTTCGTGGCGGGCATCGGACCGTTGTGCGTTGTATTGCTGCAGGTCCTGATACCCATCTTTCCAACGTAACCTTTGCACCTTCCTAGTTCCTTCGTTCTTTCAGCTTTTTAACATCCAATGATCATCATCTGGGTTTCCTCGTTCTTCGAAATCAGCTCTTAGACCTTTATTTGGTTGATAGTTATTGTAGGAAATCATGTGAAGCCAAAACAATGAAAATGTCAGGAAAAAGATATACTTTGTTTTCTTTGCCAATACGAAGCCTATTTTAGCCAATTGAATTTGTTTTGACTCATAAGACATGTGTGGTCTAAAAGTCTGTTTTCCGGTTGTGGAGTATGTATCTTTCCTCTGTTCTCAACACATTGTGCAGCGTATGCATTGCATTTTAACCTGTCGACTCCGTTTTGATGCTAGGTCCAGCAAAAGTGGTAGGAGATCATACAACACAAGAACGAGAAACTCGTGGTATAATGTTAACGTTGTACTTTATGGTTTGACATTAACATTGGTTTGAATTGGAGGAGGAGGGGGGGAATGAAGCAATTGGTCCGAAGTCTGGTATGTATATCAAAATTTTGTGTAAAGTATTGGTGTACTTTATTAAATATATCTAGATTATTACAGATAACATTCTAGGATTCATGTACTTACGGAGCTGTGTTTCCGTAGCCATTTTGGATCTATGTATTGGTATTATCCGGGTAATATTTTTTGGGTAAAATGATCAGGTTTAGTTTGGATCCTGGCTTGATTAATTATTACAGGTTATTTATCGCGTCGACTTATTGTAGATGACCAACAATTCAAGTTAATGAGACTAGGTTTTCCGCGCAGTTGTTTTGAAGGAGCCTATGTAAGCTCTTAATATTGAATAATTACGCTTTGAAAGGATCTATGTTATGTAGTTTGCCATTGTACTCCTTATTAGTTTCTTCGTTTTGTTTGGTGCCTCCGGCGACA

mRNA sequence

CAAATGGGCTACTCTCGTAGTCTTACTCTACGTCTCTACTCCTACAACAAAATTTCGCCTCATTGTCTTCCTGTCTCTCTCACATCTTTCTTCTGAATAGCCTCTGAAATCGTGCAGCGTTGTCTTGAGCAAAGCAAAGCCTAAAGACCAGCTGCACACCCATTAACCTCCCTCCTAAGTCCTAAACCCTCTGCAAAACCACTCTTACATTACACAGAAAGCGCAAAACTACGCTATTTGGCTCATTCATTACTCTCACATTTTCTGTTTTCCAAATACCCATTAAACCAACCTTTATTAAATACATTACTCCCTAATAAGAAACAATCCCTTTGTCTCTCTCTCTTAGGGTTTGGAAATGGTGATTTTCGCAATTTCTAAACATGCCCATTTCTCCAGACCTAGTCAATTTCTCAATTTCTTTGAAACCCATCATTTTTTGGAGGTTTTAGCAAATGGGTTTGTGCCTAATTGGTCCAGCAAAAGTGGTAGGAGATCATACAACACAAGAACGAGAAACTCGTGGTATAATGTTAACGTTGTACTTTATGGTTTGACATTAACATTGGTTTGAATTGGAGGAGGAGGGGGGGAATGAAGCAATTGGTCCGAAGTCTGGTATGTATATCAAAATTTTGTGTAAAGTATTGGTGTACTTTATTAAATATATCTAGATTATTACAGATAACATTCTAGGATTCATGTACTTACGGAGCTGTGTTTCCGTAGCCATTTTGGATCTATGTATTGGTATTATCCGGGTAATATTTTTTGGGTAAAATGATCAGGTTTAGTTTGGATCCTGGCTTGATTAATTATTACAGGTTATTTATCGCGTCGACTTATTGTAGATGACCAACAATTCAAGTTAATGAGACTAGGTTTTCCGCGCAGTTGTTTTGAAGGAGCCTATGTAAGCTCTTAATATTGAATAATTACGCTTTGAAAGGATCTATGTTATGTAGTTTGCCATTGTACTCCTTATTAGTTTCTTCGTTTTGTTTGGTGCCTCCGGCGACA

Coding sequence (CDS)

ATGGTGATTTTCGCAATTTCTAAACATGCCCATTTCTCCAGACCTAGTCAATTTCTCAATTTCTTTGAAACCCATCATTTTTTGGAGGTTTTAGCAAATGGGTTTGTGCCTAATTGGTCCAGCAAAAGTGGTAGGAGATCATACAACACAAGAACGAGAAACTCGTGGTATAATGTTAACGTTGTACTTTATGGTTTGACATTAACATTGGTTTGA

Protein sequence

MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVNVVLYGLTLTLV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01452Spo01452gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01452.1Spo01452.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01452.1.utr5p.1Spo01452.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01452.1.CDS.2Spo01452.1.CDS.2CDS
Spo01452.1.CDS.1Spo01452.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01452.1.utr3p.1Spo01452.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01452.1.exon.2Spo01452.1.exon.2exon
Spo01452.1.exon.1Spo01452.1.exon.1exon


Homology
[Close]
BLAST of Spo01452.1 vs. NCBI nr
Match: gi|902222662|gb|KNA19226.1| (hypothetical protein SOVF_063350 [Spinacia oleracea])

HSP 1 Score: 136.7 bits (343), Expect = 1.500e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

		  

Query: 1  MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN 60
          MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN
Sbjct: 1  MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN 60

Query: 61 VVLY 65
          VVLY
Sbjct: 61 VVLY 64
[Close]
BLAST of Spo01452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI93_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063350 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.100e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

		  

Query: 1  MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN 60
          MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN
Sbjct: 1  MVIFAISKHAHFSRPSQFLNFFETHHFLEVLANGFVPNWSSKSGRRSYNTRTRNSWYNVN 60

Query: 61 VVLY 65
          VVLY
Sbjct: 61 VVLY 64
The following BLAST results are available for this feature:
BLAST of Spo01452.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902222662|gb|KNA19226.1|1.5e-29100.hypothetical protein SOVF_0633... [more]
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BLAST of Spo01452.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RI93_SPIOL1.1e-29100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo01452.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01452.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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