Spo00396 (gene) | SpinachBase

Overview


Name	Spo00396
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerases II, IV and V subunit 12 (DNA-directed RNA Polymerase II subunit K)
Location	SpoScf_00966 : 74688 .. 79791 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTCGTCATACTCGGAGGAAGATTGTCGAGAGCTCGCCCAGTCGAGCTGCTGAGGAGGATGCCTCCGACGTAGAAACTGGGGAGCTGGAGGATGTAGAGGTTGGTGGTTTGGTCCCACAAGAGAAGTCTGCCTTTGATAATAGTGGCTGGAGGCCGGAAGATTTGGTCTTCAACCGAATTCATCACTTGTCTCATTGGCCATCAATGGGCGTGGTATGATTATTGTATTTTGCCTAGATTTGTCTTTTCCCCTTTTGATCATGCTTATTTATATTGACTTGTCCTTGTTCGTAGACCGAGTCTATGGGTATTCGAGTATTCTGGTCTTGGAGAGAGCTTGCGAGGTCTTTCAGGCATATGATACGAGGGTTCTGTAGGAGCAGTCGGGCTTTGCCCCATTTTGGGACGCCATCAGGCTGGGATTAGGGAAGCCTATATATATAATAATTGTATTTATGAATCATAACCATTAGTCATTTTAGAAATACATTTTAGAGAGAGAAAGAGGAGGGGATTTATATTCTCTCAACATAAGAGAGATTTTTTGAGAGAGAAAGAGTGAGATGGTGAGTGAAATAGTAAAAAAAATAATTCCTCCTTATTCTCTCTCTAAAAATTCCTTCTGAATGTTTCTCGTTTGTTGAAAATGAGTGAATTAAGAAAAACACTAGTTCAATTTGGTTAATTTTCGAAGCAAGAGAATCTCTGGAGAGCGTGATACTTTCCGAGGATTGAGATTTGTTTTTGAAGATTTATTAAAAGATATTGATGCTCCTAATAAATGTTGGTCAAGTGTTTAAGGTACGTTTCCTTGTTCTTTCCTCTAATGTTCTTTTCAAATTGTAATGTTCTTTTCACAACTTTACTTTTACTGTGTCACCAACGTAGTTTGTTCTTTTATATCAACATAGTTTGTTCTTTTATATCAACGTACATAGGTTGTTAAAAAAGAACATATAATGGTTTGAAAAGAACAAATAACACTTAAAAAAAAAAGAACATAGTCTGATTCGTGGTAAAAGAACAAAAATACTTTAAAAAAAATATATAGATTTAGTTTTAAGTGCATCAAAAAATCGTCGTTTCGTCTTTTTAATTAGAACATAAAATCGTTTGAATAGAACAAATAACACTTAATAAAAAACCATAGATCTGATGCGTGGGATAAGAACAAAATTACATTTAAATAAAAATATAGATCTAGTTTTAAGTGCATCAAAATATCGTCGTTTTCGTCTTTTTAATTAGAACAATAAGTGGTTTGAAAAGAACAAATACAACTAATAAAGGAACATAGATTTGTTGTTAATTCTTTTCGTCCCTTTCATTATGTTCTTTTGTTTGATAAGGAAAAAGAAAATGTTGTTCTTTTTCATGTGTTTTGTTCTTTTTTCTTTTCTTGTTGTTTTTTTTAAAAAGTTTTAATTTTGAGTTTTAATTATTTTATTTTTCTTTTGATTTTGTTCTTTGTGTTTTGTAAAAAAACTGTTGTTCTTTTTTTAATTATTTTGTGTTCTTTTTAACTTTTTTAACTTTTTACTGATTTTTAATTTTTTATAATATTATCAATAATATGTTTTTTTTTGTTTTTCTGTTGCATTTTTCACATAATGTTCTTTTTAAAAAATAGTTGTTCTTTTTATACTTTATCAGGAGAGAGAATATGTTATTTTCATTTTATATATTTTCTTTACGTTTTTAACATTAGTGTTCTTTTCAGGTTTTGGTTAATGTTCTTTTTGTTTACTCTATTATATTCTTTCTGTTTAGTTTCTTATGTTTTTTTTTTTTGTTTTTTTGCGTTTTCTTTTAATGCTTTGCGTTTTGATCCAAGTGCACGTAGATCTACGTACAGGCCCTGCACCATCCGTGCGTTGACCGGTGACCAGATGCCTAGCCAACCTCAAGTATATAAATCGTTCTCGTTTCTTTATTCTCCCTCTCCTCCACCGAGTTCACTTTACTTTCAGTCGATTCACTCTTCCACAGGTCCGTTTCTTTCTTTTTCTCTCACTAAACTCCTGCAGAACCCTAATAATCTACTCTTTAAATTGATAGATATTCTTGTTCTCTCGCAAATTTATCATGTAATTTAATCGCTTACATTATTTCTTTCTCGTAAACCCTAATTTGCTTCCCCTGATTTTTTAGGGTTTCTTATTGTGCAATGGATCCTCAACCTGAACCCGTGAGCTACATCTGCGGAGGTAATTTCTTTATGTTTCCCTGCAATTGCACTTCTTTCACTCTTATTTATTAATTTGAGGAGTATTTGAAAATTTCTATTATTCGCCGATTATTGAAGGATTATTTCTAGTTTGCGGAAGTATCATGCAAACAGTTTATTAAATCGTTTTTTTTTCTGCTGATTATTCATGACGTTTATTATTTGAAAATTAAAATTGTTCATAAATGTGTAGATTGTGGACAAGAGAACACTCTGAAGCCTGGAGATGTCATACAGTGTAGAGAATGCGGCTATCGTATTCTGTATAAGAAAAGAACCCGTCGGAGTAAGATTATATTGATTGTTTGCATTTTATATTTTCTCTTTAGGTGCATATATTTTCTGTAAAACATTTTATTTTGCAGAAGTTTACAACTTTAGTTTCATAGTACGAATTTGAGGGAAGTTTTTTGGATGTCACTTGTTTGCATTTGAAAATGGGATTTTGTAGTTGGGTTTCCATGCATACAACGAAGGTGCTAAATTAGTTTCGTATATCGAGCAATGAAGGCCCTTTCTATTATTGTGTATATTCACTTATGCTGTAGATTTGGATTGGGAGTAGGAAGTGAAGACTAGAATCGTTCCCAGGGATTTGCTTTTGAAAAGATAGGCAAAATCATTATTTGGTTGTTTCTCATTGAGGTTTTGACTTGTAGGGATACCATAACGTATTGGATTTTGAGATCCTTTGGTAAGAGCATGCGGATTCCTTAAACATGAATTGTTTGGAAGTTTGAACAAGCATGTGAATTACTTAACATGAATTATTTTCAATTTCGAACGTGTCCGTGAGTTCCTTGACATGTGATACCAGTTTGCCATATCATATCAGGAATTTAAGATCTTTCGTCTTGTGCAATGTTCTTGTAAGCAGTGGGCAAATAACATGTTCTGGATGTGATGGATTCATTTACCAAGGGTTGTAAATTGATAATTTCTCTTCATATCAATTTTATCGATCCTTTCCTTTCCCAATACATTTTGCAGTCAGCTGTTAGAATAAATTCTGCATTGCTCCTGTGATTTATTGTTAGTTGCTATAATATAACCATTTCCATCACTCTAAAGCCTCTTCGCAATCCTTGACGCACTAGTTGTTGATACCAACCCTTTTCTGTGGCGATCCACACTGGGAGATGCAGCTGCCCTCCACCCTTCGCCTCTTGATGCGAGCTTTAAGACTTAGATTAAACCATGAGCTGAGCAGTTTAGTATGTCCAGTAAATAAATATATTGGCATCACCACCATGTATTTTCAGGATATTGTCCTAACGAAGCCTTGTTGCGATGCTAAGCTTATCTTTGATGTGAGTAAGTACTAGTTACTTTGTTCTCTTGTGCTATGAATGTTGGTTTATATAGGTTTTCTTGTCCATTTTACATCAAAACTTGGTTCATACTTCTAAATCTAAACCTTTTAGCATTTTACTCGGGGAAAACAACAGGGGGAAAGACCACAGTGTTCCATAGTACAGTGAACCTAATGCCAATATCCCAACGCAGCCTGGTTCCATAGCACAGTGTTGCGGTTGCCAATTTTCCAATCCCAGCCTGGCTCGATAGCACAGTTTTCCTAATGCCAAGACCACCAGCGTTAGAGTCACACGTCCCTTGTCACATATAAGCTCTACACAGTGCATTTAGTTTCTTCAAATTGGCTTTTGGCAACAGAAAGACTTTGACTCCAGTACACATGAACTCATTAAGATAGAGTTTACTAATTGTAGTCTCCCTGCTTCACATCCTAAATCTAGCAGTCATCTTGTCAAGAAGCTGCTCACAGTCGTACCTGAAAGGAAGACAACCGAGCTGGAAACCAGAGGCATATGTTATTCTCTTATAGTCTTATCTATGGATTCCTCCATAACACTGCAGTAGACAGCAGATTGGAGAAATTTTGATTTGTTTATTCTGCCTAGATGTAATGTAAATCTACTAGTTGGTAAATACGCTATTTGAGTTATCTATTAAATCTGATCATGAAAGATTATATGAATATTCCATTTAAAGTTGATAACTTTACTTGCTAAAGGGTTGAAGCAAAGAAGTTGTGGAAGCCGATTCTTAGGATAGTTCTTTCTGAACACAATGTCAAAAGTACCAATTATGTAAGTTCTATCCAATTTTTGCCCGTAGGCTAAATCATAGTTTCTAGGTAATTGAAAATTAAAGTGAACTAGACAACTACTACCATGAGCTTTCTGATATCTTACTTCAGTTCCTACTTGAACAGAAAAACGATAACGTATTTCCTTCACCAACAGGAGCTTTTGAAGGAGATTTGTGATAACTCATCTTTCATGGCTTGGGTGGTTTAGTTGTAATTGTGGTTTGGGGGTTTCACAGATTGTGGTTTAGACACTGTAATTTTGTATGTATTTTGAGATGTTGAATGATTTTGCTGTGTTGTTCTTTTATTGTGTCAATGCAACTAACTTTGTTGGTTTCCGCTGCAGTTGTCCAATATGAAGCACGCTAAAGTTGATGCACGGTTCAAGCAAAAGCGAATGTATATTTTGGATATGCATTAGGAGGTCAACAACGTTTTAAGTGTGCTTAAATATATGTATGTTTTGCGTAAAGGTTACAGATTGTAGGATTATGATGTGGATTAGTCCTGTATTGGTATCTCTGAGTGACTGCTCTTATCTGGGCATTTTATGGATTTAAATCTAATTTCTTACATGCTTGGGCGAGTTATGTTTAGTTGATCTCTGATTGATGTGTTTGCTGTTATTTCTGAAACTTTCATTTCTGCCATAATTCTGATAATTTTTTGCTCGGCGATGAGGCTGAGAAAGCCCCCTATTTAATACTGCATCACCACTGCTCCTCTCCCCCAACCCCCCGGCCCCCCTCCATATCCAC

mRNA sequence

ATGCCTCTTCGTCATACTCGGAGGAAGATTGTCGAGAGCTCGCCCAGTCGAGCTGCTGAGGAGGATGCCTCCGACGTAGAAACTGGGGAGCTGGAGGATGTAGAGGTTGGTGGTTTGGTCCCACAAGAGAAGTCTGCCTTTGATAATAGTGGCTGGAGGCCGGAAGATTTGGTCTTCAACCGAATTCATCACTTGTCTCATTGGCCATCAATGGGCGTGTTCACTTTACTTTCAGTCGATTCACTCTTCCACAGGGTTTCTTATTGTGCAATGGATCCTCAACCTGAACCCGTGAGCTACATCTGCGGAGATTGTGGACAAGAGAACACTCTGAAGCCTGGAGATGTCATACAGTGTAGAGAATGCGGCTATCGTATTCTGTATAAGAAAAGAACCCGTCGGATTGTCCAATATGAAGCACGCTAAAGTTGATGCACGGTTCAAGCAAAAGCGAATGTATATTTTGGATATGCATTAGGAGGTCAACAACGTTTTAAGTGTGCTTAAATATATGTATGTTTTGCGTAAAGGTTACAGATTGTAGGATTATGATGTGGATTAGTCCTGTATTGGTATCTCTGAGTGACTGCTCTTATCTGGGCATTTTATGGATTTAAATCTAATTTCTTACATGCTTGGGCGAGTTATGTTTAGTTGATCTCTGATTGATGTGTTTGCTGTTATTTCTGAAACTTTCATTTCTGCCATAATTCTGATAATTTTTTGCTCGGCGATGAGGCTGAGAAAGCCCCCTATTTAATACTGCATCACCACTGCTCCTCTCCCCCAACCCCCCGGCCCCCCTCCATATCCAC

Coding sequence (CDS)

ATGCCTCTTCGTCATACTCGGAGGAAGATTGTCGAGAGCTCGCCCAGTCGAGCTGCTGAGGAGGATGCCTCCGACGTAGAAACTGGGGAGCTGGAGGATGTAGAGGTTGGTGGTTTGGTCCCACAAGAGAAGTCTGCCTTTGATAATAGTGGCTGGAGGCCGGAAGATTTGGTCTTCAACCGAATTCATCACTTGTCTCATTGGCCATCAATGGGCGTGTTCACTTTACTTTCAGTCGATTCACTCTTCCACAGGGTTTCTTATTGTGCAATGGATCCTCAACCTGAACCCGTGAGCTACATCTGCGGAGATTGTGGACAAGAGAACACTCTGAAGCCTGGAGATGTCATACAGTGTAGAGAATGCGGCTATCGTATTCTGTATAAGAAAAGAACCCGTCGGATTGTCCAATATGAAGCACGCTAA

Protein sequence

MPLRHTRRKIVESSPSRAAEEDASDVETGELEDVEVGGLVPQEKSAFDNSGWRPEDLVFNRIHHLSHWPSMGVFTLLSVDSLFHRVSYCAMDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00396.1	Spo00396.1	mRNA

Homology

[Close]

BLAST of Spo00396.1 vs. NCBI nr
Match: gi|731422679|ref|XP_010662206.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 2.100e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. NCBI nr
Match: gi|356531072|ref|XP_003534102.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 8.100e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. NCBI nr
Match: gi|672184844|ref|XP_008812669.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Phoenix dactylifera])

HSP 1 Score: 111.7 bits (278), Expect = 1.100e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. NCBI nr
Match: gi|747071863|ref|XP_011082823.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12-like [Sesamum indicum])

HSP 1 Score: 110.9 bits (276), Expect = 1.800e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MD QPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDSQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. NCBI nr
Match: gi|848871798|ref|XP_012836463.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata])

HSP 1 Score: 110.9 bits (276), Expect = 1.800e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCGQENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGP9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109730 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.500e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGH2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_069460 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.500e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Match: D7TA24_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0079g00400 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.500e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Match: V7C304_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G138700g PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.600e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Match: A0A0S3TBL1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G212200 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.600e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Match: NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana GN=NRPB12 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.100e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDP PEPV+Y+CGDCGQENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Match: RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1


		  
Query: 93  PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10  PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Match: RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1


		  
Query: 93  PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10  PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Match: RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=3 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 4.400e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1


		  
Query: 93  PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10  PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Match: RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 9.900e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1


		  
Query: 93  PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15  PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63

[Close]

BLAST of Spo00396.1 vs. TAIR (Arabidopsis)
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 106.7 bits (265), Expect = 1.200e-23
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1


		  
Query: 91  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 142
           MDP PEPV+Y+CGDCGQENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Spo00396.1 vs. TAIR (Arabidopsis)
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1


		  
Query: 92  DPQPEP-VSYICGDCGQENTLKPGDVIQCRECGYRILYKKR 132
           D QPE  V Y+CGDCGQEN LK GDV QCR+CG+RILYKKR
Sbjct: 10  DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

The following BLAST results are available for this feature:

BLAST of Spo00396.1 vs. NCBI nr
BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
BLAST of Spo00396.1 vs. TAIR (Arabidopsis)

BLAST of Spo00396.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731422679\|ref\|XP_010662206.1\|	2.1e-22	100.	PREDICTED: DNA-directed RNA po...	[more]
gi\|356531072\|ref\|XP_003534102.1\|	8.1e-22	98.0	PREDICTED: DNA-directed RNA po...	[more]
gi\|672184844\|ref\|XP_008812669.1\|	1.1e-21	98.0	PREDICTED: DNA-directed RNA po...	[more]
gi\|747071863\|ref\|XP_011082823.1\|	1.8e-21	98.0	PREDICTED: DNA-directed RNA po...	[more]
gi\|848871798\|ref\|XP_012836463.1\|	1.8e-21	98.0	PREDICTED: DNA-directed RNA po...	[more]

BLAST of Spo00396.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CGP9_BETVU	1.5e-22	100.	Uncharacterized protein OS=Bet...	[more]
A0A0K9RGH2_SPIOL	1.5e-22	100.	Uncharacterized protein OS=Spi...	[more]
D7TA24_VITVI	1.5e-22	100.	Putative uncharacterized prote...	[more]
V7C304_PHAVU	5.6e-22	98.0	Uncharacterized protein OS=Pha...	[more]
A0A0S3TBL1_PHAAN	5.6e-22	98.0	Uncharacterized protein OS=Vig...	[more]

BLAST of Spo00396.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NRPBC_ARATH	2.1e-22	90.2	DNA-directed RNA polymerases I...	[more]
RPAB4_BOVIN	4.4e-12	59.1	DNA-directed RNA polymerases I...	[more]
RPAB4_HUMAN	4.4e-12	59.1	DNA-directed RNA polymerases I...	[more]
RPAB4_MOUSE	4.4e-12	59.1	DNA-directed RNA polymerases I...	[more]
RPAB4_SCHPO	9.9e-12	55.1	DNA-directed RNA polymerases I...	[more]

BLAST of Spo00396.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G41010.1	1.2e-23	90.2	DNA directed RNA polymerase, 7...	[more]
AT1G53690.1	1.2e-12	75.6	DNA directed RNA polymerase, 7...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	GENE3D	2.20.28.30		coord: 97..141 score: 1.5
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	PFAM	PF03604	DNA_RNApol_7kD	coord: 100..131 score: 1.9
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	SMART	SM00659	rpolcxc3	coord: 98..141 score: 2.8
None	No IPR available	PRODOM	PD012151		coord: 104..141 score: 5.0
None	No IPR available	unknown	Coil	Coil	coord: 128..141 scor
None	No IPR available	PANTHER	PTHR12056	DNA-DIRECTED RNA POLYMERASES I, II, AND III	coord: 71..141 score: 5.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0000418	DNA-directed RNA polymerase IV complex
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24993	0.75	Barchart \| Table
Spo13184	0.74	Barchart \| Table
Spo06838	0.73	Barchart \| Table
Spo18997	0.71	Barchart \| Table
Spo14667	0.69	Barchart \| Table
Spo26424	0.69	Barchart \| Table
Spo01202	0.69	Barchart \| Table
Spo19839	0.69	Barchart \| Table
Spo24607	0.69	Barchart \| Table
Spo01514	0.69	Barchart \| Table
Spo02933	0.68	Barchart \| Table
Spo21214	0.68	Barchart \| Table
Spo16161	0.68	Barchart \| Table
Spo10765	0.68	Barchart \| Table
Spo11339	0.68	Barchart \| Table
Spo15639	0.67	Barchart \| Table
Spo07646	0.67	Barchart \| Table
Spo11723	0.67	Barchart \| Table
Spo14383	0.67	Barchart \| Table
Spo16936	0.67	Barchart \| Table
Spo18046	0.67	Barchart \| Table
Spo18575	0.67	Barchart \| Table
Spo20695	0.67	Barchart \| Table
Spo24752	0.67	Barchart \| Table
Spo25614	0.67	Barchart \| Table
Spo05161	0.66	Barchart \| Table
Spo00398	0.66	Barchart \| Table
Spo11442	0.65	Barchart \| Table
Spo24940	0.65	Barchart \| Table
Spo18629	0.65	Barchart \| Table
Spo09681	0.65	Barchart \| Table