Spo03816 (gene) | SpinachBase

Overview


Name	Spo03816
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal protein L6 family protein
Location	SpoScf_00978 : 218885 .. 219910 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTGCGATCATTCTTCATTTGGGTCAGGTGCAGGTGGCGAAAGTGTCATAATTCAAATTAATTTTTAGTTTGGGAACCCAACGTATACCAATGTTCAGCCAATATACAGTGCTTGTGTTTGTTCTGTTTTCTCATTTGAAGGCGAATAAATTCTCGTGTATTGTTTTACTTCTAATTTCTGTCAATCCTGAATTTAGTCAGATCAAATGGATTCAGCCAATATACAGTGCTTGTGTTTGTTCTGTTTTCTCATTTGAAGGCGAATAAATTCTCGTGTATTGTTTTACTTCTAATTTCTGTCAATCCTGAATTTAGTCAGATCAAATGGAAGCAAGATATTTCAAAATTCTAAGGCTATTAGGAACTGGTTACAAAGCCAGAGCTGAAGCAGAAGGTCGTTTGTTGTGCCTAAAACTAGGTTACAGCCATGAAGTTGAGTTACCAGTTCCACCTACTGTTCGTGTCTTCTGCTTTAAACCCGACGTAATTTGCTGTGCTGGGATTGACAAGGCAAGAACACATCAGTTTGCTGCCGCTGTTCGAAGCATTAAACCCCCTGATTCATACAAAGAGAAAGGTATGCGTTACAAGGATGAAGTCATTAAGTTGAAGCCTGGAAAGAAGGATAGATTGAAGTAAAGAGGTTTGGTTTTTGGTCTAGAAGAAAATGTATCTGCACGTTGCTATCTAAGTTGGGTTTGTAGTTGGAATCCTATTGTTAAAGTATAAAACTGTTTAGGATTCACAAGCATTTCCAGGACAGCATATTGTTTATGTTGAATCTCTTTGAGACGGGCTCGAATAATGTTTACCTTTGAATCATTCATGTTGCATATTTTACTGCAAAATTTGAAGTTCCTACAAGATAAGAGTAGTACTAAAATGTTGCCTAGGGGCTTGCTCTTAGGTCGTGCTTTGTGTTTTGAAGACCGAACTGTTAATTCAATTAAGCCTTTTGACATGCTAGCTTACAGCGCTTTCTTGAACATTTCTGGAAGCAATGCTGTTTGAAATCCACG

mRNA sequence

ATGGTGAAGTGCGATCATTCTTCATTTGGGTCAGGTGCAGATCAAATGGAAGCAAGATATTTCAAAATTCTAAGGCTATTAGGAACTGGTTACAAAGCCAGAGCTGAAGCAGAAGGTCGTTTGTTGTGCCTAAAACTAGGTTACAGCCATGAAGTTGAGTTACCAGTTCCACCTACTGTTCGTGTCTTCTGCTTTAAACCCGACGTAATTTGCTGTGCTGGGATTGACAAGGCAAGAACACATCAGTTTGCTGCCGCTGTTCGAAGCATTAAACCCCCTGATTCATACAAAGAGAAAGGTATGCGTTACAAGGATGAAGTCATTAAGTTGAAGCCTGGAAAGAAGGATAGATTGAAGTAAAGAGGTTTGGTTTTTGGTCTAGAAGAAAATGTATCTGCACGTTGCTATCTAAGTTGGGTTTGTAGTTGGAATCCTATTGTTAAAGTATAAAACTGTTTAGGATTCACAAGCATTTCCAGGACAGCATATTGTTTATGTTGAATCTCTTTGAGACGGGCTCGAATAATGTTTACCTTTGAATCATTCATGTTGCATATTTTACTGCAAAATTTGAAGTTCCTACAAGATAAGAGTAGTACTAAAATGTTGCCTAGGGGCTTGCTCTTAGGTCGTGCTTTGTGTTTTGAAGACCGAACTGTTAATTCAATTAAGCCTTTTGACATGCTAGCTTACAGCGCTTTCTTGAACATTTCTGGAAGCAATGCTGTTTGAAATCCACG

Coding sequence (CDS)

ATGGTGAAGTGCGATCATTCTTCATTTGGGTCAGGTGCAGATCAAATGGAAGCAAGATATTTCAAAATTCTAAGGCTATTAGGAACTGGTTACAAAGCCAGAGCTGAAGCAGAAGGTCGTTTGTTGTGCCTAAAACTAGGTTACAGCCATGAAGTTGAGTTACCAGTTCCACCTACTGTTCGTGTCTTCTGCTTTAAACCCGACGTAATTTGCTGTGCTGGGATTGACAAGGCAAGAACACATCAGTTTGCTGCCGCTGTTCGAAGCATTAAACCCCCTGATTCATACAAAGAGAAAGGTATGCGTTACAAGGATGAAGTCATTAAGTTGAAGCCTGGAAAGAAGGATAGATTGAAGTAA

Protein sequence

MVKCDHSSFGSGADQMEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGIDKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo03816.1	Spo03816.1	mRNA

Homology

[Close]

BLAST of Spo03816.1 vs. NCBI nr
Match: gi|902128099|gb|KNA04161.1| (hypothetical protein SOVF_202280 [Spinacia oleracea])

HSP 1 Score: 214.2 bits (544), Expect = 1.300e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI
Sbjct: 1   MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 120
           DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK
Sbjct: 61  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 104

[Close]

BLAST of Spo03816.1 vs. NCBI nr
Match: gi|870855049|gb|KMT06797.1| (hypothetical protein BVRB_7g159550 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 202.2 bits (513), Expect = 5.000e-49
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA+YF+ILRLLGTGYKARAEA+GRLLCLKLGYSHEVELPVP  VRVFCFKPD+ICCAGI
Sbjct: 1   MEAKYFRILRLLGTGYKARAEADGRLLCLKLGYSHEVELPVPAAVRVFCFKPDMICCAGI 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 120
           DK RTHQFAAAVRS+KPPDSYKEKGMRYKDEVIKLKPGKKDRLK
Sbjct: 61  DKERTHQFAAAVRSVKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 104

[Close]

BLAST of Spo03816.1 vs. NCBI nr
Match: gi|595808250|ref|XP_007202741.1| (hypothetical protein PRUPE_ppa013193mg [Prunus persica])

HSP 1 Score: 157.5 bits (397), Expect = 1.400e-35
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 1


		  
Query: 9   FGSGA-DQMEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKP 68
           F  GA  QMEA++F+ L+++G GYKARAEAEGRLL LKLGYSHEVEL VPP VRVFCFK 
Sbjct: 26  FSIGAFTQMEAKFFRFLKIVGVGYKARAEAEGRLLLLKLGYSHEVELTVPPAVRVFCFKN 85

Query: 69  DVICCAGIDKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           +V+CC GIDK R HQFAA+VRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 86  NVVCCTGIDKDRVHQFAASVRSCKPPEVYKGKGIMYVDEVIKKKQGKKSK 135

[Close]

BLAST of Spo03816.1 vs. NCBI nr
Match: gi|976920237|gb|KVI04971.1| (Ribosomal protein L6 [Cynara cardunculus var. scolymus])

HSP 1 Score: 157.1 bits (396), Expect = 1.900e-35
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1


		  
Query: 15  QMEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAG 74
           +MEA++F+ L+++G G+KARAE+EGRLL LKLGYSHEVEL VPP VRVFCFKP+++CC G
Sbjct: 45  EMEAQFFRFLKIVGVGFKARAESEGRLLFLKLGYSHEVELSVPPAVRVFCFKPNIVCCTG 104

Query: 75  IDKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           IDK R HQFAAAVRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 105 IDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKKKQGKKSK 147

[Close]

BLAST of Spo03816.1 vs. NCBI nr
Match: gi|728831455|gb|KHG10898.1| (50S ribosomal L6 [Gossypium arboreum])

HSP 1 Score: 157.1 bits (396), Expect = 1.900e-35
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA++F+ L++ G GYKARAEAEGRLL LKLGYSHEVELPVPP VRVFCFK +V+CC G+
Sbjct: 1   MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGL 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           DK R HQFAA VRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 61  DKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVIKKKQGKKSK 102

[Close]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202280 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.900e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI
Sbjct: 1   MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 120
           DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK
Sbjct: 61  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 104

[Close]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CVH6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051510 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.500e-49
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA+YF+ILRLLGTGYKARAEA+GRLLCLKLGYSHEVELPVP  VRVFCFKPD+ICCAGI
Sbjct: 1   MEAKYFRILRLLGTGYKARAEADGRLLCLKLGYSHEVELPVPAAVRVFCFKPDMICCAGI 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 120
           DK RTHQFAAAVRS+KPPDSYKEKGMRYKDEVIKLKPGKKDRLK
Sbjct: 61  DKERTHQFAAAVRSVKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 104

[Close]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Match: M5WAW7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013193mg PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 9.900e-36
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 1


		  
Query: 9   FGSGA-DQMEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKP 68
           F  GA  QMEA++F+ L+++G GYKARAEAEGRLL LKLGYSHEVEL VPP VRVFCFK 
Sbjct: 26  FSIGAFTQMEAKFFRFLKIVGVGYKARAEAEGRLLLLKLGYSHEVELTVPPAVRVFCFKN 85

Query: 69  DVICCAGIDKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           +V+CC GIDK R HQFAA+VRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 86  NVVCCTGIDKDRVHQFAASVRSCKPPEVYKGKGIMYVDEVIKKKQGKKSK 135

[Close]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Match: A0A0B0N8R6_GOSAR (50S ribosomal L6 OS=Gossypium arboreum GN=F383_04452 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.300e-35
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA++F+ L++ G GYKARAEAEGRLL LKLGYSHEVELPVPP VRVFCFK +V+CC G+
Sbjct: 1   MEAKFFRFLKIFGVGYKARAEAEGRLLFLKLGYSHEVELPVPPAVRVFCFKNNVVCCTGL 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           DK R HQFAA VRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 61  DKQRVHQFAATVRSCKPPEVYKGKGIMYTDEVIKKKQGKKSK 102

[Close]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Match: A0A103Y9F6_CYNCS (Ribosomal protein L6 OS=Cynara cardunculus var. scolymus GN=Ccrd_016716 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.300e-35
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 1


		  
Query: 15  QMEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAG 74
           +MEA++F+ L+++G G+KARAE+EGRLL LKLGYSHEVEL VPP VRVFCFKP+++CC G
Sbjct: 45  EMEAQFFRFLKIVGVGFKARAESEGRLLFLKLGYSHEVELSVPPAVRVFCFKPNIVCCTG 104

Query: 75  IDKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           IDK R HQFAAAVRS KPP+ YK KG+ Y DEVIK K GKK +
Sbjct: 105 IDKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKKKQGKKSK 147

[Close]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Match: RM06_MARPO (60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 1.400e-27
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA++F  L ++G GYKA   A+G +L LKLG+SHE+ L V P+VRVFC KP++ICC G+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKK 116
           D  +  QFAA V+S KPP+ YK KG++Y++E+I  K GKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKK 100

[Close]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Match: RL6_THEYD (50S ribosomal protein L6 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplF PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.600e-16
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1


		  
Query: 20  YFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCF-KPDVICCAGIDKA 79
           + K L++ G GY  RA+  G  + L +GYSH VE  +P  ++     K   I   GIDK 
Sbjct: 83  FTKALQIYGVGY--RAQVSGNKIILNIGYSHPVEFVLPEGIKATVDEKQTTITLHGIDKQ 142

Query: 80  RTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGK 115
              Q AA +R+I+PPD+YK KG+RY DEV+KLKPGK
Sbjct: 143 LVGQIAANLRAIRPPDAYKGKGIRYTDEVLKLKPGK 176

[Close]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Match: RM06_RECAM (60S ribosomal protein L6, mitochondrial OS=Reclinomonas americana GN=RPL6 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-15
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1


		  
Query: 20  YFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGIDKAR 79
           Y K + L+G GYKA  +   + L LK+G+S E+   +P  ++V C + ++I  +GIDK +
Sbjct: 91  YSKTIELVGVGYKA--QLIDKKLVLKIGFSIEINYEIPSDIKVDCSRSNIIVISGIDKQK 150

Query: 80  THQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKK 116
            +Q AA +R ++ P+ YK KG+RY  EVI+LK GKK
Sbjct: 151 VNQVAAEIRLLRKPEPYKGKGIRYLGEVIRLKEGKK 184

[Close]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Match: RL6_FERNB (50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplF PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.100e-15
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 1


		  
Query: 22  KILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGIDKARTH 81
           K L ++G GY  RA+ +G  L + LGY+H+VE  VP  V+V    P+ I  +GIDK R  
Sbjct: 92  KELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQRVG 151

Query: 82  QFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKK 116
           Q AA +R  + P+ Y  KG++Y DEV+KLK GKK
Sbjct: 152 QVAADIRKWREPNPYSGKGIKYVDEVLKLKEGKK 183

[Close]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Match: RL6_MAGSA (50S ribosomal protein L6 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplF PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.600e-15
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1


		  
Query: 24  LRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGIDKARTHQF 83
           L + G GY  RA  EG+ L L+LGYSH++E P+P  V + C KP  I  +G DK +  Q 
Sbjct: 87  LEINGVGY--RAAVEGKSLKLQLGYSHDIEYPIPDDVTMKCEKPTAISISGRDKRQVGQI 146

Query: 84  AAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKK 116
           AA +R+ + P+ YK KG++Y+ E I  K GKK
Sbjct: 147 AAEIRAFRGPEPYKGKGIKYETETILRKEGKK 176

[Close]

BLAST of Spo03816.1 vs. TAIR (Arabidopsis)
Match: AT2G18400.1 (ribosomal protein L6 family protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.400e-36
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 1


		  
Query: 16  MEARYFKILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGI 75
           MEA++F+ L+++G GYKARAE  GR L LKLGYSHEVEL VPP VRVFCFK +V+CC GI
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 76  DKARTHQFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDR 118
           DK R HQFAA VRS KPP+ YK KG+ Y DEV+K K GKK +
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

[Close]

BLAST of Spo03816.1 vs. TAIR (Arabidopsis)
Match: AT1G05190.1 (Ribosomal protein L6 family)

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-15
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1


		  
Query: 22  KILRLLGTGYKARAEAEGRLLCLKLGYSHEVELPVPPTVRVFCFKPDVICCAGIDKARTH 81
           K L L+G GY  RA  +G+ L L LG+SH V++ +P +++V   +   I  +G DK+   
Sbjct: 128 KKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIG 187

Query: 82  QFAAAVRSIKPPDSYKEKGMRYKDEVIKLKPGKKDRLK 120
           QFAA VR  +PP+ YK KG++Y DE+++ K GK  + K
Sbjct: 188 QFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

The following BLAST results are available for this feature:

BLAST of Spo03816.1 vs. NCBI nr
BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
BLAST of Spo03816.1 vs. TAIR (Arabidopsis)

BLAST of Spo03816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902128099\|gb\|KNA04161.1\|	1.3e-52	100.	hypothetical protein SOVF_2022...	[more]
gi\|870855049\|gb\|KMT06797.1\|	5.0e-49	92.3	hypothetical protein BVRB_7g15...	[more]
gi\|595808250\|ref\|XP_007202741.1\|	1.4e-35	70.0	hypothetical protein PRUPE_ppa...	[more]
gi\|976920237\|gb\|KVI04971.1\|	1.9e-35	69.9	Ribosomal protein L6 [Cynara c...	[more]
gi\|728831455\|gb\|KHG10898.1\|	1.9e-35	71.5	50S ribosomal L6 [Gossypium ar...	[more]

BLAST of Spo03816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QCB7_SPIOL	8.9e-53	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CVH6_BETVU	3.5e-49	92.3	Uncharacterized protein OS=Bet...	[more]
M5WAW7_PRUPE	9.9e-36	70.0	Uncharacterized protein OS=Pru...	[more]
A0A0B0N8R6_GOSAR	1.3e-35	71.5	50S ribosomal L6 OS=Gossypium ...	[more]
A0A103Y9F6_CYNCS	1.3e-35	69.9	Ribosomal protein L6 OS=Cynara...	[more]

BLAST of Spo03816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RM06_MARPO	1.4e-27	55.0	60S ribosomal protein L6, mito...	[more]
RL6_THEYD	9.6e-16	46.8	50S ribosomal protein L6 OS=Th...	[more]
RM06_RECAM	1.2e-15	42.7	60S ribosomal protein L6, mito...	[more]
RL6_FERNB	2.1e-15	46.8	50S ribosomal protein L6 OS=Fe...	[more]
RL6_MAGSA	3.6e-15	45.6	50S ribosomal protein L6 OS=Ma...	[more]

BLAST of Spo03816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G18400.1	1.4e-36	67.6	ribosomal protein L6 family pr...	[more]
AT1G05190.1	3.0e-15	41.8	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 14..117 score: 7.7
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 38..54 score: 2.2E-14coord: 8..33 score: 2.2E-14coord: 80..101 score: 2.2
IPR020040	Ribosomal protein L6, alpha-beta domain	GENE3D	3.90.930.12		coord: 21..116 score: 3.7
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 33..103 score: 6.6
IPR020040	Ribosomal protein L6, alpha-beta domain	unknown	SSF56053	Ribosomal protein L6	coord: 20..115 score: 1.78
None	No IPR available	PANTHER	PTHR11655:SF17	RIBOSOMAL PROTEIN L6-RELATED	coord: 14..117 score: 7.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03213	0.66	Barchart \| Table
Spo06277	0.65	Barchart \| Table