Spo01772 (gene)

Overview
NameSpo01772
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionLeucine-rich repeat resistance protein, putative, expressed
LocationSpoScf_01119 : 195394 .. 197978 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTTTGTTTTGGACGCGTTTCCTATTCAAAGAACTGATTGTGAGTCAATAGGTCTTGTCTTGCATTCACGATCAACGAGTTAAAGGTCTAGCTTGTTAATCAACTATCCTTGTTTATACAACGAGTTTTTAAACTCGTATCATTCAAGTTTCGAAATTTTAGCTTAGGCGACATTTCATTAAATGCTGCAAAACAAATGCCGCCTAAGCCAAAATTTCACATCGCGCCACTGCCAATCCTTTTATGCCCACAATTAATTTCACAATTAATTTGAAAATTTCACCAGAAAAATACAATTCATTTGAAACTAAGCCCCATATTACAATTCAATTATATTTCAACTTAGGGTTTCACTTATTTTACTTTTTTTGTGTCGGCACTTTCTCTCAATCACTTCCCTCTAAAAAATTCAATTGTTGCGTTGATGCGTTTCTCCTTGGTGGTGGCTGCTCGGTGGTTGTTTCTCGGCGGTTCCTTCTCGGGTTGGTGCTCTTGGCTGCTTCTCTTTTTGCTCGGTGGTTGCTGGGGCTGCGACGTTGCTTCTCGGTGGTTACCGGTCGATGGTTTCTACTCGGCGGTTTCGATCTTCTCTTGGCATAGCTTCTCTGCGGTAATTTTCCAGCTTCTCACTTCCTCAATTAGTCTGGAGTTATTTTTCCCATTGATTTGCAATTCAATTCGATTTTAGGGTTTAAGATATTAATTGGTGTTCTAATTATTGTTTAGATATCATGACCATTTCCAATTTTGTCAATCGGAGTTGTTTTTTTGCATATATGATACACATATTAATATTGCCGCAAATTTCTTTGATGGAGCTATCTAATGCAAATGACATCGATAGTACATTATTCATCATTTCAGCACTTGCTATAGAATTGTCTTTCATGAGAACAACACACCAACGATGTTGACTAATAAGAATATGAGATATAGTGCAATTAAAAATAAATTTTCTTTTAAAGAATGATGCTGTTTGTATTTACCAGTTTCTTTTGTTACCTCTAGACCTATCATAAAATCCTCCATGGTTATCCCATCTGAAAAAAGGAACATGATCGGGTTAGTTCGTTTTGTGTTTGATGTAGTATTAATTTTTTGATTTATTGATTCAGTATTTCGAATTTGTGAGTCGTGAATCTAATTTTTTTGTGTCTTTGGTTTCACTTTGAATTGGTTATTCGGGGAGTATAATTTATGGATTCTTGTTAAAAACTTTACTTACTTGTATAATAATTTTGGAGTATCAAAGTCTTTTTCTCTTTTTAGTTTTTGAATTATGAGGTTGATTAAAATCTTTAGTTTGATGTATGAGGTTCCCTTGTAGCAAAATGGTCTCGGCTAAAAATGTGATCCTAATGTTGTCCAATCTTGGGAGATGATGTTAGTACGTTATATAACAAAGTAAATTAATTTAATAGTGCATCCAACTTAAACAGGCTTTTAACATACTAGCTTCAATTTTGAATGACTTGTATGAGCACTTGCCGCTTCTTTTTTACTGACTTGTACATGTGTCTAATATGAGTGATCGAGTCCGAGTATCACAACTTATGATTTTGGCTCTTAAGTTCACTTTGTTGTTTGATGTTGGATTTATTTATATAGCATAACTCACTAGGAGAGCTTGATTGTTGTTATTATTTACTTGAACTAATAATTTTGAGTTCATGATTGACCTTCGTAGATTTTAGCACACAGGGATTTATATAGACTATAATGGTTTTTGTTTTGCTGCTAGACAGTAGAAGAATGTATGTAGCTGGCCCCACTGTGGACTATAATCTGATTGTTAGAAAAATATGTGTAATCATCCCTCAATTATGGTGGAATAAACTACAGGATGTCCTACCCCCTGAAATGAGTGAACTGAAAAACTTGACACACCTGTAAGCAATCTTGACTAATAATGTACATTTTATGTGCTTGTTACTTCTTCTTTGTATTATTTCTGAATGGAGAATGTTAAACTCTACTTCCTTAGATATCTGAGCTTCAGTAATTTCAAAGGGGGAAATCTCTAGCAAATCTTCCTGCTCTGCGATATTTATACTTACATAAAAACCGTTTCACTGGGCGCATTCCTGCACAATTGGGCACCCTGCAGAATCTTCGACAATTGTAAGATTTTAAATCCAACTGTTAGTTTTTGTGTTCTCAACTGGTCTTACAGATGTTTCGCGATCAAAAATGATATTATTAATGTCAACATTTCAAATGATATTATTCATATCATTTTTAGAGATGTTGGTAAAAATCATCTAGTGGGTATAAATAGGAAACTCATACGCATTGAAGGGTGCTTTCCTGCCCTTCATAACATGTAAGACTCTATAGCATTTGCCTGGATCATTTGTTTGTTTTACTAACTTCTTTGACTGCCATCTAGCTTTCTGAAACTCTGTATAAATATTTGGCAGGAGGAGTTCCTGCTCAGCTAGCCAACTTTTTAAATTGGTCATATAAGTTTATCTTATGAAAGGAGTGTCTGACCCAAAATTCTAAGACTGTAGATTATAAGTTCCTCTTTAATATTATTGCCTTGCTTTAATTTTTTTTTGTTCAAATATAATTTAAGCCCA

mRNA sequence

TTTTCTTTGTTTTGGACGCGTTTCCTATTCAAAGAACTGATTGTGAGTCAATAGGTCTTGTCTTGCATTCACGATCAACGAGTTAAAGGTCTAGCTTGTTAATCAACTATCCTTGTTTATACAACGAGTTTTTAAACTCGTATCATTCAAGTTTCGAAATTTTAGCTTAGGCGACATTTCATTAAATGCTGCAAAACAAATGCCGCCTAAGCCAAAATTTCACATCGCGCCACTGCCAATCCTTTTATGCCCACAATTAATTTCACAATTAATTTGAAAATTTCACCAGAAAAATACAATTCATTTGAAACTAAGCCCCATATTACAATTCAATTATATTTCAACTTAGGGTTTCACTTATTTTACTTTTTTTGTGTCGGCACTTTCTCTCAATCACTTCCCTCTAAAAAATTCAATTGTTGCGTTGATGCGTTTCTCCTTGGTGGTGGCTGCTCGGTGGTTGTTTCTCGGCGGTTCCTTCTCGGGTTGGTGCTCTTGGCTGCTTCTCTTTTTGCTCGGTGGTTGCTGGGGCTGCGACGTTGCTTCTCGGTGGTTACCGGTCGATGGTTTCTACTCGGCGGTTTCGATCTTCTCTTGGCATAGCTTCTCTGCGGATGTCCTACCCCCTGAAATGAGTGAACTGAAAAACTTGACACACCTATATCTGAGCTTCAGTAATTTCAAAGGGGGAAATCTCTAGCAAATCTTCCTGCTCTGCGATATTTATACTTACATAAAAACCGTTTCACTGGGCGCATTCCTGCACAATTGGGCACCCTGCAGAATCTTCGACAATTGAGGAGTTCCTGCTCAGCTAGCCAACTTTTTAAATTGGTCATATAAGTTTATCTTATGAAAGGAGTGTCTGACCCAAAATTCTAAGACTGTAGATTATAAGTTCCTCTTTAATATTATTGCCTTGCTTTAATTTTTTTTTGTTCAAATATAATTTAAGCCCA

Coding sequence (CDS)

ATGCGTTTCTCCTTGGTGGTGGCTGCTCGGTGGTTGTTTCTCGGCGGTTCCTTCTCGGGTTGGTGCTCTTGGCTGCTTCTCTTTTTGCTCGGTGGTTGCTGGGGCTGCGACGTTGCTTCTCGGTGGTTACCGGTCGATGGTTTCTACTCGGCGGTTTCGATCTTCTCTTGGCATAGCTTCTCTGCGGATGTCCTACCCCCTGAAATGAGTGAACTGAAAAACTTGACACACCTATATCTGAGCTTCAGTAATTTCAAAGGGGGAAATCTCTAG

Protein sequence

MRFSLVVAARWLFLGGSFSGWCSWLLLFLLGGCWGCDVASRWLPVDGFYSAVSIFSWHSFSADVLPPEMSELKNLTHLYLSFSNFKGGNL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01772.1Spo01772.1mRNA


Homology
[Close]
BLAST of Spo01772.1 vs. NCBI nr
Match: gi|902193073|gb|KNA12190.1| (hypothetical protein SOVF_128050, partial [Spinacia oleracea])

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-7
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1 

		  

Query: 57  WHSFSADVLPPEMSELKNLTHLYLSFSNFKGGNL 91
           W +   DVLPPEMSELKNLTHLYLSFSNFKGGNL
Sbjct: 80  WWNKLQDVLPPEMSELKNLTHLYLSFSNFKGGNL 113
[Close]
BLAST of Spo01772.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY61_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_128050 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.900e-7
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1 

		  

Query: 57  WHSFSADVLPPEMSELKNLTHLYLSFSNFKGGNL 91
           W +   DVLPPEMSELKNLTHLYLSFSNFKGGNL
Sbjct: 80  WWNKLQDVLPPEMSELKNLTHLYLSFSNFKGGNL 113
[Close]
BLAST of Spo01772.1 vs. TAIR (Arabidopsis)
Match: AT5G61240.2 (Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.500e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 

		  

Query: 51  AVSIFSWHSFSADVLPPEMSELKNLTHLYLSFSNFKG 88
           A++   W+    DV+PPE+ ELK LTHLYLSF++FKG
Sbjct: 137 ALTNLRWNKLQ-DVIPPEIGELKRLTHLYLSFNSFKG 172
The following BLAST results are available for this feature:
BLAST of Spo01772.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902193073|gb|KNA12190.1|2.8e-785.2hypothetical protein SOVF_1280... [more]
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BLAST of Spo01772.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QY61_SPIOL1.9e-785.2Uncharacterized protein (Fragm... [more]
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BLAST of Spo01772.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01772.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G61240.25.5e-656.7Leucine-rich repeat (LRR) fami... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..33
score:

RNA-Seq Expression
   



Co-expression
Gener valueExpression
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Spo140840.67Barchart | Table
Spo148260.67Barchart | Table
Spo115340.66Barchart | Table