Spo04208 (gene) | SpinachBase

Overview


Name	Spo04208
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01241 : 169215 .. 174848 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACAAATAAATTGGCGAATTGTTCTATATACCCATTTTCAGATAGCGAAACCAAAATCTTGAGCATTGACTTAGGGTTTGAATTCCAATCGAAATCCGATCCCCAAATCCTCTCTCCTTTCTCTCTCTCTCTTCCATCAACAATGGCGATGCGAAGGTTCATCAACGAGCTACGAGGCGTTACAGTGAAGGAAGTCCCCGACAAGGTGAAACCAATGCTCTCATTCTCTTACCTCAAGGAATCATTCGCAAAAGGCATCGACAGCTACCATGCTAAACACATCGAGACGGATTCAATCATGCCTCTTTACCATGTTTGCTTTGGCGGCATGGCCTTCTCTTACCTCGTCGCTCTTCCTGAGGAACGCCGTCATCTCGAGCATGCTCAAAAGCATGACCATTGATCTTCCTCCATTTTCTGGTAATTTTGAAAATTTGCGTTTTATTTTAATCGATTCTAAATTTCCGTTTATATTTTTATTGTTTTAGAAATTTGAAGATTATTTTATTTTGTTTGGGTTTGATTTATGTGAAAGTTTTTGTTGAAATGTGGCTTTTGATCTTCTCGTTGTCCTTTTTGTTTGGATGGGATTTCCGATCTTTATGATTATCACGTAAATTTCATCCTTTCATTGTCTGGTTATATAATCCGTTTTAACATCTGTTTCGCATGTCAATTTTTTCGGGTTCTTTGTTTTGTTTTGGTTGAAATTCGATAATTTGGATTATGGTGATCGATTTGATTTCTTTGCTCTTGGCTGGAGGCATGTACTGATTAGTTATCACTCCTTTTAAGGTGAACTGTGGTTGCTTATTATCCGATTGTTGTTTGTTTCTTATATGGTTTGGTTCGAATCACTGAGGCGTTGTGTGGAACTTCCTTGTTTCTCTAATTAGAAGAAATATTGTTGAAAAATTGTATTGTTCATGTCTGATTCTTGGGCTGGGATTCCATTGTCTAGAAGTATATATTTGGTGTTTCACTTGACTACTATGGTTTAAGTAATTGATTGGTGATTACTTTTTGGGAAAGGAATCAAAGGCTTATTGAGGCATTGAACATTTGGAGATGCTTGTTATTTCCAGCTTTGGTCCAGTCATTAAACCGGAAAAACCAGTCTTGTATTAACATTAAGTACTACTGATAATCACTTGGTTAAGATTATGATTGTAATATTGTTGCTGGTATGTACTAAGAAAATTATCACAGCCGTGGCTGAACATTTGATTATCAATCTTAATTTCCGGAATCGTCAGTCATCACTGATTTTTGGTGAGAAGACCCTCAACAAGCCCTTTATAGTGTTAAGAGTTTATTTTGGAAATTCTTCATAGCTATGGTTTCTTCTACTCATCGGAGGTTCTATTATTACTGAGATCAGTTGCTTCAATGGTTGTATTCACATATTAGGAGTTAGGATGTAATTGGATCTCTGCAGGTGTTGATCTTCCTTCAAGGAGGAAGTCCCTCTTTTAGGTTGGAAAACTTTTTTTCTGAACCTTTTTGAAGGTTGGCTCTTAGGAGAAGTTGCAAGAGTATTCTATTCTGAGTTTTGTAGTTATGTCAAGGTAAAAGGGATCCAACAAGTAAGACTCCTCTAGTTCATTTAATGTAGAGAGGATAGAGTAGTTCTTCAAAACTGTGGATTGCAAGTTTTGTTTGGGAAAATCGGAGGAAAAGAGATGCATTGAGTATTTAACTCGTGATATTCAATGCTGGAATTTGGGATGATAGTTCGAGTCTCACCTGGACTCTTCAGTTTACCTCAAATTCCCGTGTCAGATCCTCGACACTTGGACATCGGTATGGATACTTGGACACATCATTTTGGACCAAAATCATGCAACTTTCACAAAATAGCTTTCACAAACTAGGAGTGTCCCATACACAGACACGCACGAGTCTCCGATATGGGTATCCGAGTCCGGGTAACATAGGTTGGAGTCTCACTATAAAAAATTTAATCTGAAGGAGACTAAATACATGAATAATAGCTTGGGGGGTTTAAAAACTTACACTGAGTTTGAGCATCCTCCTTATGAGGACTTTTGTTGAGTCACAAAGGACAGGAAGACTTTGTAAGGTTGTGTGAACCAAGAATCTGTGAAGCTAATATGAATCCAGGTCCTTGGTACTGCACACTAGCAAGCTCAAGGTCTCACTATTTATGGTAGGCCTCACCATTTTCCTTCAACAATTTTGGCATCCAGTGTTTCAATTTGATATCAATGCAAGATATCCATTCCAGTATTGGCATCTACCATTAACATCTTGGCTGAATTCTTGGTATTTTTGTTTTAGTTGAAATTCAATGACTTGGGTTATAGTGATCGATGGGATTTCTCTCTTCTAGGCTTGGGCTCACAATTCTTGTTCGTTTGTTATTTTGTTTCAGTCAGAATAAAGGCGTTGTGTAGAGTACCCTTGTTTCTCTAAATAGAAGAAATTCTGATGAACAAATTGTATTGTGAATGCCTGATGCTTTGGTCGGGAATATCGGGATTCCTTTGTCTAGAAGTATTTGATGTTTCACTTGATGAATAGGGTTTAGTTTCGATTGGCAATTACTTTGTGGGCAAAGAATCAGATGCTTATTGAGGCTTGACACCTTTGAAAATGGTGGACTGTACACTTTGGAGTTGGCTTAACTTACTTCTAGACTGGTTGTATCACTCCTTTTTTTCTGTATCAGAAATGTTTTCTGGAGAATAAATCTCACATTTCTACCTATTTAGATTCTGAGCTTGAATGAGCAGCTCAACGGTTGTAGAGAGCTTCAATTAATCATGCCTATTTTCAGTTATATTGTTTTGTTACTTCTGATATGTGAGACTAATTAGTTAAACTGTGACATAATTGGCTTATGCTGCTTGTATTCGTTTAGCAGCGGTATGTGTCCAAGTGTAACACACGCCTTTCTTTAATGAAAATATTGCACGATTTTGTTCCAAGCGGCATATCCGTGTCTGGTTCTCGAGTATTTGGTACGGGTGTTTAAGCTAAATGAAGTCTCTGAATAGTATAGTAGTAGTCGGCTGCACTTGCTTATTAGACATGAGAGTGTCTGCAGTTATGTGGATTTTGGATAGTGGTTGTAGCATACAATTGATCAATACTTTAATAAGACCTTGGCCATGAAGAGCAATCGTTACCTGACCTCATCAAGTGGAGCTGGTTTTCTTTTAGTTTTTTCCCATGCATGCGGTTGTGGGTGTGGTTGTTGTGTGCATGCGTGTAACCCTTAAATAGAAATCTAGGGGAAGTTAGTATCTTCTATCTAATTTATAGCATTTAATATAGGTTTGTGAAATGTGTGAAACGTCATTGACCCTTTCTCAAACTATTGGTCATAATGTTGCTTGTGATAATTAACGAATCTTATGAGAGTGGGTTGTGGCGTTGTGCAATGTGGTGTATTGGAGAGAACTCTTTGTTTTTGTTTTATTTTGGGTTTTTTGTTCCCTCGGAGTTTGGAGCATTAACAGAATTCAGGTTTGAAACTCACTTTTAAATATATTGATGACCCTATAGATGTTTGCTTTGATGATGTAGAGAAAAACGAGGAGAAATCTAGACCGGGGCTTTCAGTGGGGTAATTGAACACTTCTATCAGACGCGGAAGTTATGGTTGATATATTTGAAAAATTATTTTGACCAAAGTTATGGAAGTGAATGTAACTACTTACATCAGTTGGTATGAAAGACATGCTTAATTAGTCGATCAGGTAATTGACCAAGATTGAGTTGGTAATTCTGATTTAACGAGGCGTTTTAACCTATTTACTACTGCAAACCCAAATCCAACTGTTGTTAACAAAACCAATCTTAAGCCCAACTGAAGGACTTAGATTCTTAGACTTCTATCTTTTTTTTATTTTGACACATTCTACAGAAAAATTTAGAGATTTGTATTTCCTCTGCCTTTGAATGTACATAGGGTCTCTCTTTTGTTCTAGCCGATCTCTGTATTGGTGTTTTTTTTATGGGTTGCTGTTACAAACATGGCTCCTATATATCAAATAATAAATATTCCTTTTCATGTGGTCTACCGGCTGCTGCTCAATCAGTTAGTTACAAAATACCATTTAACTCTATGGCGTCTATGGTGTCATCAATATCCGTACGTGTGATTTTTCGGTCATAGGTTTTCACCTTTACCCCCTTCGATCAAGAGATACTTTAAATCAAATATATATTTATGTTTCTAAAATAAAAAAAATGTATGGAACAACATTTTTTTAAAATTCACGAATCGGGTTGATAAGCTAAACCAGATAGTTATACGAGTGAAAGAAAATACCTTTAGATTTGCTGGAAATAAACCTAATCTCATTGCATATGTGCAAGGGTTAAACGAAAATAAACATAGGCAGTCAAGGTTTTGTCCCCCAACCTTGATTAAACTTGTCTTTAATAGGAATAACTTTGGTGTTGGATTGTCCCCTTCCGTTGAATATTTCTATCTTAGGGTTTGACATATACTCAAGCTCATGACTGAAAACTAATTTCCTGGAAGAGGTAAGATTTTGGAACTTTTTTAATTATTTGGTAAATGATCTGTTTGGTTCTTATAGCCATAGGCCCGTAACATGTCCATCCTTTAATTGCTTAAGATTGTTTCTGTTTATGGAGGTAATTGCTTTCGGCCTTTCGGGTATTGTTTGACTGTTGTTTTGGAGATTATTGTTGTTAGAAGTTGATTGTTTTTATGGTTTAATTTATCACGAATGTTGGTTGTCCTTTGCTATAGAATTTTCTTTCCAGATGAATTGCAAGACTTATCTTACCAAATCCGAATTTTCCAGGACTGTTGAAGTCTGTCTTGGAGGCTGCTGCAGTCTGTCAAGATTATCTTTGTTGCTTTGCCAGTTGAATTTACAAATGTATTGTTTCACAGTGCAAACTGAAAAAATAATTTTTGAGAACCCATTTTGATGGCGAGGATGATATTGTAAACCTCTGGAAATCAATTGGATCATGTTCTACATGTTGCAGATTTTTCTCCAGTTTTATGAAACTGTATCGTTTAACCATCCCCTTTTGCTATTTTATTCCTTCTCACTCATGTTGTCAGGCACACGGCCTGTCCGAGGAACATGTTTCTTATTGTTTGATAATTCGTGTCATGCTTGTAGAATGCATATTTCTAGTGCCATTCGATAATAATGGAACCTCGATAGTTTTTGGTGAAGCAATGGCCAAATTGTTACCCATTATTATCTCAGTCTTTTCACTAGTAAGCGCTGTAAGACTGAAAAATCTGGTCTTCAAGACCTTAGGGCTTAGCCGCTTAGGTACTCTGATTTCAAAATGTTATACGAAGTAACTCTGTCCGGTTTGAAATAATTGGGGTAGTTTACCTTTTCATGTTTGTCAATGTAAATGTTTAAACCATGATATTTTTAGTTTTGTATTTGTAAAAATTATAAAAAAAGTTGATATTTTGAAAGTATATATATTGAGACAAGTGAAACAAGGCTGCACATGGCTATTTTTCCTTGCCCATAAATCACAAATGATAGTCAAAATGAATTTGAGAATAGTTTTAAAAGTGAAAGTGTCCATATTATTTAGAAATGGAGGGAGTATTACTTGTGAAAAATTCAAAGTATTTATCCACCAAACACCCCGG

mRNA sequence

TCCACAAATAAATTGGCGAATTGTTCTATATACCCATTTTCAGATAGCGAAACCAAAATCTTGAGCATTGACTTAGGGTTTGAATTCCAATCGAAATCCGATCCCCAAATCCTCTCTCCTTTCTCTCTCTCTCTTCCATCAACAATGGCGATGCGAAGGTTCATCAACGAGCTACGAGGCGTTACAGTGAAGGAAGTCCCCGACAAGGTGAAACCAATGCTCTCATTCTCTTACCTCAAGGAATCATTCGCAAAAGGCATCGACAGCTACCATGCTAAACACATCGAGACGGATTCAATCATGCCTCTTTACCATGTTTGCTTTGGCGGCATGGCCTTCTCTTACCTCGTCGCTCTTCCTGAGGAACGCCGTCATCTCGAGCATGCTCAAAAGCATGACCATTGATCTTCCTCCATTTTCTGGACTGTTGAAGTCTGTCTTGGAGGCTGCTGCAGTCTGTCAAGATTATCTTTGTTGCTTTGCCAGTTGAATTTACAAATGTATTGTTTCACAGTGCAAACTGAAAAAATAATTTTTGAGAACCCATTTTGATGGCGAGGATGATATTGTAAACCTCTGGAAATCAATTGGATCATGTTCTACATGTTGCAGATTTTTCTCCAGTTTTATGAAACTGTATCGTTTAACCATCCCCTTTTGCTATTTTATTCCTTCTCACTCATGTTGTCAGGCACACGGCCTGTCCGAGGAACATGTTTCTTATTGTTTGATAATTCGTGTCATGCTTGTAGAATGCATATTTCTAGTGCCATTCGATAATAATGGAACCTCGATAGTTTTTGGTGAAGCAATGGCCAAATTGTTACCCATTATTATCTCAGTCTTTTCACTAGTAAGCGCTGTAAGACTGAAAAATCTGGTCTTCAAGACCTTAGGGCTTAGCCGCTTAGGTACTCTGATTTCAAAATGTTATACGAAGTAACTCTGTCCGGTTTGAAATAATTGGGGTAGTTTACCTTTTCATGTTTGTCAATGTAAATGTTTAAACCATGATATTTTTAGTTTTGTATTTGTAAAAATTATAAAAAAAGTTGATATTTTGAAAGTATATATATTGAGACAAGTGAAACAAGGCTGCACATGGCTATTTTTCCTTGCCCATAAATCACAAATGATAGTCAAAATGAATTTGAGAATAGTTTTAAAAGTGAAAGTGTCCATATTATTTAGAAATGGAGGGAGTATTACTTGTGAAAAATTCAAAGTATTTATCCACCAAACACCCCGG

Coding sequence (CDS)

ATGCTAAACACATCGAGACGGATTCAATCATGCCTCTTTACCATGTTTGCTTTGGCGGCATGGCCTTCTCTTACCTCGTCGCTCTTCCTGAGGAACGCCGTCATCTCGAGCATGCTCAAAAGCATGACCATTGATCTTCCTCCATTTTCTGGACTGTTGAAGTCTGTCTTGGAGGCTGCTGCAGTCTGTCAAGATTATCTTTGTTGCTTTGCCAGTTGA

Protein sequence

MLNTSRRIQSCLFTMFALAAWPSLTSSLFLRNAVISSMLKSMTIDLPPFSGLLKSVLEAAAVCQDYLCCFAS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04208.1	Spo04208.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo04208.1 vs. NCBI nr
BLAST of Spo04208.1 vs. UniProtKB/TrEMBL
BLAST of Spo04208.1 vs. ExPASy Swiss-Prot
BLAST of Spo04208.1 vs. TAIR (Arabidopsis)

BLAST of Spo04208.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04208.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04208.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04208.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0006275	regulation of DNA replication
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0016458	gene silencing
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0006306	DNA methylation
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006096	glycolytic process
biological_process	GO:0042176	regulation of protein catabolic process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005657	replication fork
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0042555	MCM complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0030234	enzyme regulator activity
molecular_function	GO:0005488	binding
molecular_function	GO:0003678	DNA helicase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15666	0.81	Barchart \| Table
Spo05589	0.79	Barchart \| Table
Spo25266	0.78	Barchart \| Table
Spo02380	0.76	Barchart \| Table
Spo22394	0.76	Barchart \| Table
Spo10599	0.75	Barchart \| Table
Spo18842	0.75	Barchart \| Table
Spo12311	0.75	Barchart \| Table
Spo11592	0.75	Barchart \| Table
Spo02838	0.74	Barchart \| Table
Spo21754	0.73	Barchart \| Table
Spo04667	0.73	Barchart \| Table
Spo05849	0.73	Barchart \| Table
Spo24532	0.73	Barchart \| Table
Spo15751	0.72	Barchart \| Table
Spo00900	0.72	Barchart \| Table
Spo15604	0.72	Barchart \| Table
Spo14875	0.72	Barchart \| Table
Spo13279	0.72	Barchart \| Table
Spo25954	0.72	Barchart \| Table
Spo12048	0.72	Barchart \| Table
Spo23241	0.72	Barchart \| Table
Spo11943	0.71	Barchart \| Table
Spo16627	0.71	Barchart \| Table
Spo26110	0.71	Barchart \| Table
Spo26421	0.71	Barchart \| Table
Spo06268	0.70	Barchart \| Table
Spo05159	0.70	Barchart \| Table
Spo13412	0.70	Barchart \| Table
Spo04381	0.70	Barchart \| Table
Spo05783	0.70	Barchart \| Table
Spo28289	0.70	Barchart \| Table
Spo20997	0.69	Barchart \| Table
Spo08961	0.69	Barchart \| Table
Spo04282	0.69	Barchart \| Table
Spo18094	0.69	Barchart \| Table
Spo19967	0.69	Barchart \| Table
Spo14447	0.68	Barchart \| Table
Spo08334	0.68	Barchart \| Table
Spo23038	0.68	Barchart \| Table
Spo28152	0.68	Barchart \| Table
Spo08160	0.68	Barchart \| Table
Spo15939	0.68	Barchart \| Table
Spo12265	0.67	Barchart \| Table
Spo06588	0.67	Barchart \| Table
Spo21922	0.67	Barchart \| Table
Spo22310	0.67	Barchart \| Table
Spo03473	0.67	Barchart \| Table
Spo25669	0.67	Barchart \| Table
Spo01617	0.67	Barchart \| Table
Spo00007	0.67	Barchart \| Table
Spo12304	0.67	Barchart \| Table
Spo25181	0.66	Barchart \| Table
Spo10598	0.66	Barchart \| Table
Spo23292	0.66	Barchart \| Table
Spo04219	0.66	Barchart \| Table
Spo13856	0.66	Barchart \| Table
Spo18647	0.66	Barchart \| Table
Spo06331	0.66	Barchart \| Table
Spo25289	0.65	Barchart \| Table
Spo24703	0.65	Barchart \| Table