Spo04873 (gene)

Overview
NameSpo04873
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01276 : 2952 .. 6862 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCGAACTCAAAGCAAGAACGAACGAAATCAGAAGAAAATTGAGGCAGAGGATAGTCTGCAATCGTAGGCGAGATCGGGTTTGTGTCAGCCTCTCCCTCATTTTTTGCAGTTCAGAAGATAATGAACAAGGCCCGTACGAAATCCCATAATTTGGAGCAGGATGGTGGATTATTTGTCCAGTTATGTTGGTATTTTGATTTGATGCGTCGTAATTTTGGGGTTTGTTTTGACAGGTTTTCAGTTTTGGTTTTGGGATTGTAGGTTTTCAGTTTGGTTCGTCGTTTTTTGGGGGTTTGATTTGCCAGATTTTCGGTTTTGATTTTAGGATTTTAGGATTGTTAACAAATGTTTGGGGTTTTCAGTCTGGTTCATCTTATTTTTGGGCGTTTGATTTGCCAGATTTTTAGTTTTGATTTTAGGATTTTTAACAATTGTTTGGGATTTTGCTTTTCAGTTTGGTCCATCTTATTTTTGGGGGTTTGATTTGCCAGATTTTTAGTTTTGATTTTAGGATTTTTAGGATTATTAACAATTGTTTGGGGTTTTGATTTTAGGGTTTTCATTCATTTTGGTTCGTCTTATTTTTGGGGTTTGATTTGCCAGATTTTCAGTTTTGATTTTAAGATTTTGTACTATTAATCGTTCGTTGTTGTTTTTGTACTATTAATAGGCCTCTTTCTGGTGTGCCCGGTTTTGAAGCCACTGCCTGAGACTGATGATGAGAAGGTTGATGTTACTAGGTAACGTTGCTCATCTAACTCTGGTAAATGTCTCAAATGCTATGCTATGCTAAGCTTTATGGTCTATGTGTAAATAATTATATGACTAATTAAACAGTTATTAATCATTGACGTATAAGTTGAAAGATTCATATGATCCAGGCCTCTTATGACTGCTGCAATAGGTGGAAGTAGGGGAGGGGAGGAGGCTTTGAGTTTGAGTTTAGGTTTCCATTGTGGGAGGAGAGAGAAAAGACGGAGAAAAATCAAAGCCTCCAAATCAAGGAAAACTCGTAAAAATGGTGATCCCACTTGAATCCCAAAACCTTTGCTTTACAACCAACAAAATTGGTTCATTTTTGAGAGTTTTGGTTCATTTCCGAGTAGCAATGGGTTTTTACGAGTTTTGTTCATAATTGGTTCATTTTTACATTAAGTTTTTCTTGGTGGCTGATGCTTTTGCTTGATCTTCCATGGGTTTAGAACTTCAGATTATACATGATTGTGGCCAATGAACTATCCTTTCAATCCCTTACTGGAAAAGAAACTAATCCGTTCTTATTTTAAACAAGAAACTAATTCATCCATTTCATCAATAAATAATTTGCAGGTAACATCTCTGGACTTATTGATTTACTTCTAACTGATTTGCTGTGCCAAGGACTTCTTTGTGAGTCTGGCATTGTGTGTGAATGTGACCCACGATGGCCATGAAAAGGCTACTACTCCTTAATTACTAATTAGTACAATAATTAATGTCTTAGGCCTTAATGGACTATATTTTTTCGGTGATGCACAAATTAGTGCCTTTAATGGTTAATAAATTAGTATGATTACCCATGTTTTCAAATTGGTTAGAATATTCTCCAATATGATGATATGATGCAAACTCTAACCGAATTTGGAGGTATCTAGAATAATAAAATAGGAAGAAGTACAATAAAAGTATAATCAATGAATCATGCTGAACCCAAATTGGAGGTTCTGAATGTAGAAAACAAGAAATGATCTAGCTGTTTGTATGCATTTACATAGAGGAAAATAGTGTGATCTGTGTTACTGAATTTACTGTTAGTTACTTAGTTGGTTATCATTAGGTGATTTCTAATTATATTATTAGTTAGTTTAAGTGAGCGATGGTTAATTAAAGGGTGTTCTGGTTATTGAATTACTTTGTAGTGAGGATGTTGTTGTTAGTTTGTAATTAAATGGATAGTTTCAACAATATGAGTTAATTTGTCACTAATTTCTTCCTCGAATATAATGCACGGGAATAAGAAATTAGTCCATCCCAAAGTGAGTTTACTTTGGTTCTCTTATCATTGGACTTACGCATTATTATACAGTATGATAGTAACTGGAATGTTTCTAATGTTCTTTCCTTTTCTACCAACAATTAAAACACCGTGGAATTGAGAATAAAAAAATAGTTTCGTTTAGCTCTGAGGTCAGGGATACATGGAAGTTGTTTACTAGACATTATTAGGTTGCTACGAAACTCAATGAGTTTAGAAGAACTTATAATATATGCATATGTGGTATGTCTACTGCATATCGAGCTTATCTAGCTAGCTAATTATATATTTGGTCTTACCTTTCAAATAATAGAAAGATTTTTCATGTAATTTGTAAGGGTTTTTTTTTCCTGTGATTGTGATATGTTTTGGCGTGAACTTTCCTCACCTTATGTGATGGAGAAACTTACAACTGTTACCATTCGAGAACATGAGAAGCTGTGTAAAGCCCTACTTCAGCAGACCGAGTTTCTGCTTAGAAGTGCAGTCGTCTTAGACAACATGGTGTCATGGTATTGTCTGCAATAAGAAGGATCAGCTGTTGTTTTCAACAGAGGAGCATGAATTCTTTTTTCAAGCTATTAAGCTTCCCAAGGGCCTCAAGAAATGCAACAATTGTCTTTGCTTGAGAAATATGTTAATGTATGCAAGAACATGTACTTAGGTGTATTTTGGACAGAGGAGGTATCTTATGTTTCGGGGTAAGGACCTCTGTCGTGGATCGTTTTTAATTTGTTTTATTTCATCAAAGCAAGTGAACATACAGATAGGTAATAAAAGGACCCTTGATGTTAACCTTCTGGTGGAAGCAACTCTCTGAGGGTCGACTATTTCTCGGCTGCATGAACTTCAGTTGCAAGTTTCGTGGTAATACTCAAACTCAAGAATTCCACAAGAGGATAAAGAAACGAATAAAACATAAAAAGATGTAGTGCATCTGAGAAAAACTCATTGTTTTGTTTAAAAAACTACTATTATCAACATCATTGTAGTATAAGGTGTTGTACTGCAGGGTTTGATTTTCTGCTACGGAGTACGATACAGTGTTATTCGGTATAGAACTAGCATCATCAAGGTAAATACGAGTAGATCACATGGTTAAAGGATGGTTATTTATAGTAGGTTGGATGAGGCATAAATTATGGATTTTTGAAGTTTCATCTCATAAAAGACCATAAAAATAAAATAAGGAAAAATAGACAATATCATTAAGAACATAAACTTGGTATTACTTGTAAAAAATTTCCCCTTAGATGTGAATGTCGAGCAACTTGTAATAAGTGTTGACAGCGATAATGACGTGACAGCTTGTGTTGCTTCTAATGAAGTTAATGATTCCAGAAACTTAGAAGCTAATTTGGGTGATGATTATGACGAAAGTCAATGTCAAGGAAACATGAATATCGTTAATTTCTTGACTTTTTTATCATTTAGATTGATTTTTGAAGTTGTATATGCTTGGAAACAATGTTTTCCTTGTGTTATTTGGAAATGTCAGCTTTAAAATAACACTCGTAGAATCGGCTTAACCATTTATGACACTATTATCGATGTGTAAGTAAAAGTGTGCTTTTTTAGTATTATTTTTACTAAAAAGACATGTATTAGTCACATTTTATCATTTCGATCACTCAATTTCTCAAATTTGTAGGATCCTGCGTTCCCATCCTACCGATTCGATCTAAAGAGAGATTTCAATCCCTACAACCTTGATTATTGTTATAGCTGATGAGTTTAGGATGTTGGATGTGAACTACAATGGGTCGGTATGTTAAGTTATTCTTCTCTTTGCTCACATTGAAGTATCTTTTCTGCTTTTCTTTGTATTGTTATTGATTATTATAAAGTTGGTTGAAGGGACTTGATCGTTATCAAATAACCATACCTTGA

mRNA sequence

ATGGGATCCGAACTCAAAGCAAGAACGAACGAAATCAGAAGAAAATTGAGGCAGAGGATAGTCTGCAATCGTAGGCGAGATCGGGTTTTCAGTTTTGGTTTTGGGATTGTAGGCCTCTTTCTGGTGTGCCCGGTTTTGAAGCCACTGCCTGAGACTGATGATGAGAAGGTTGATGTTACTAGTTGGTTGAAGGGACTTGATCGTTATCAAATAACCATACCTTGA

Coding sequence (CDS)

ATGGGATCCGAACTCAAAGCAAGAACGAACGAAATCAGAAGAAAATTGAGGCAGAGGATAGTCTGCAATCGTAGGCGAGATCGGGTTTTCAGTTTTGGTTTTGGGATTGTAGGCCTCTTTCTGGTGTGCCCGGTTTTGAAGCCACTGCCTGAGACTGATGATGAGAAGGTTGATGTTACTAGTTGGTTGAAGGGACTTGATCGTTATCAAATAACCATACCTTGA

Protein sequence

MGSELKARTNEIRRKLRQRIVCNRRRDRVFSFGFGIVGLFLVCPVLKPLPETDDEKVDVTSWLKGLDRYQITIP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04873.1Spo04873.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo04873.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo04873.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo04873.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo04873.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009987 cellular process
biological_process GO:0008152 metabolic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005516 calmodulin binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016707 gibberellin 3-beta-dioxygenase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo172250.77Barchart | Table
Spo142400.76Barchart | Table
Spo172200.75Barchart | Table
Spo166800.73Barchart | Table
Spo057650.73Barchart | Table
Spo202090.73Barchart | Table
Spo196090.72Barchart | Table
Spo230960.72Barchart | Table
Spo031630.71Barchart | Table
Spo027490.71Barchart | Table
Spo230420.71Barchart | Table
Spo162180.71Barchart | Table
Spo028850.71Barchart | Table
Spo016600.71Barchart | Table
Spo246010.70Barchart | Table
Spo125430.70Barchart | Table
Spo264910.70Barchart | Table
Spo263520.70Barchart | Table
Spo269950.70Barchart | Table
Spo070790.70Barchart | Table
Spo092140.70Barchart | Table
Spo195770.70Barchart | Table
Spo150890.69Barchart | Table
Spo105830.69Barchart | Table
Spo244560.69Barchart | Table
Spo225500.68Barchart | Table
Spo031100.68Barchart | Table
Spo261910.68Barchart | Table
Spo142040.68Barchart | Table
Spo231850.68Barchart | Table
Spo138990.68Barchart | Table
Spo032250.68Barchart | Table
Spo269900.68Barchart | Table
Spo181160.68Barchart | Table
Spo270040.67Barchart | Table
Spo022300.67Barchart | Table
Spo031850.67Barchart | Table
Spo049850.67Barchart | Table
Spo054440.67Barchart | Table
Spo073190.67Barchart | Table
Spo077410.67Barchart | Table
Spo100210.67Barchart | Table
Spo102150.67Barchart | Table
Spo145110.67Barchart | Table
Spo147820.67Barchart | Table
Spo149210.67Barchart | Table
Spo172110.67Barchart | Table
Spo185420.67Barchart | Table
Spo237710.67Barchart | Table
Spo242870.67Barchart | Table
Spo111600.66Barchart | Table
Spo214220.66Barchart | Table
Spo218230.66Barchart | Table
Spo088630.66Barchart | Table
Spo084030.66Barchart | Table
Spo070350.66Barchart | Table
Spo236140.66Barchart | Table
Spo013440.66Barchart | Table
Spo065740.66Barchart | Table
Spo131310.66Barchart | Table
Spo120900.66Barchart | Table
Spo186370.66Barchart | Table
Spo109660.66Barchart | Table
Spo200450.66Barchart | Table
Spo103290.66Barchart | Table
Spo205030.66Barchart | Table
Spo205550.66Barchart | Table
Spo213880.66Barchart | Table
Spo018410.65Barchart | Table
Spo065800.65Barchart | Table
Spo100190.65Barchart | Table
Spo109650.65Barchart | Table
Spo034420.65Barchart | Table
Spo260730.65Barchart | Table
Spo056270.65Barchart | Table
Spo036650.65Barchart | Table
Spo116100.65Barchart | Table
Spo011310.65Barchart | Table