Homology
BLAST of Spo24266.1 vs. NCBI nr
Match:
gi|902230277|gb|KNA21792.1| (hypothetical protein SOVF_040130 [Spinacia oleracea])
HSP 1 Score: 3523.0 bits (9134), Expect = 0.000e+0
Identity = 1805/1827 (98.80%), Postives = 1805/1827 (98.80%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
Sbjct: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK
Sbjct: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI
Sbjct: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR
Sbjct: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
Sbjct: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ
Sbjct: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
Query: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP
Sbjct: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
Query: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
Query: 1141 PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEV 1200
PEISKTKERAKNVQ PMSTIINEDVDFVKSYYEMPDEEV
Sbjct: 1141 PEISKTKERAKNVQY---------------------PMSTIINEDVDFVKSYYEMPDEEV 1200
Query: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
Query: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA
Sbjct: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
Query: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG
Sbjct: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
Query: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
Query: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP 1560
YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP
Sbjct: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP 1560
Query: 1561 TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620
TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620
Query: 1621 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1680
YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1680
Query: 1681 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP 1740
SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP
Sbjct: 1681 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP 1740
Query: 1741 SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS 1800
SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS
Sbjct: 1741 SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS 1800
Query: 1801 PSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
PSAPGYSPSSTSQYTPQMSDKDDKSKR
Sbjct: 1801 PSAPGYSPSSTSQYTPQMSDKDDKSKR 1806
BLAST of Spo24266.1 vs. NCBI nr
Match:
gi|731343725|ref|XP_010683034.1| (PREDICTED: DNA-directed RNA polymerase II subunit 1 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 3461.8 bits (8975), Expect = 0.000e+0
Identity = 1762/1836 (95.97%), Postives = 1800/1836 (98.04%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
Sbjct: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQD--DEEPAKKSRGGCGAQQPTF 180
FKQALKIRNPKNRLK+ILEACKNK+KCEGGDS+DVQDQD D E AKK+RGGCGAQQPTF
Sbjct: 121 FKQALKIRNPKNRLKRILEACKNKKKCEGGDSLDVQDQDQDDGESAKKTRGGCGAQQPTF 180
Query: 181 TIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRY 240
TIEGMKIIAEYKMTKKK+DEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNP+Y
Sbjct: 181 TIEGMKIIAEYKMTKKKSDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKY 240
Query: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI
Sbjct: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
Query: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS
Sbjct: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
Query: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYI 420
ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN+ERLKELVDYGPHPPPGKTGAKYI
Sbjct: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 420
Query: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
Query: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ
Sbjct: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
Query: 541 DTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQ 600
DTLLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPIWTGKQVFNLIIPKQ
Sbjct: 541 DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQ 600
Query: 601 INLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
INL+RFSAWHQETETGFLTPGDTRV++ERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD
Sbjct: 601 INLIRFSAWHQETETGFLTPGDTRVMVERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
Query: 661 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEK 720
AARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTMETIN TIS+AKNEVKNLIR AQEK
Sbjct: 661 AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETINETISKAKNEVKNLIRTAQEK 720
Query: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQ 780
QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSL E+NNLKAMVTAGSKGSFINISQ
Sbjct: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQ 780
Query: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
Query: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
Query: 901 QKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDR 960
QKLDSLKMKK+EF+ATYRYE DA+NWEPDYMLKEHVDDLK+IREFRNVFDAEVQKLE DR
Sbjct: 901 QKLDSLKMKKTEFEATYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADR 960
Query: 961 CQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRV 1020
CQLA DIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKS MHPMEIVEAVD+LQERL+V
Sbjct: 961 CQLAKDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSNMHPMEIVEAVDQLQERLKV 1020
Query: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVA 1080
VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEF+LNREAFDWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFKLNREAFDWVIGEIESRFLQSLVA 1080
Query: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
Query: 1141 LNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDE 1200
LNPEISKTKERAKNVQC LEYTCLRSVTHATEVWYDPDPMST+I+EDVDFV+SYYEMPDE
Sbjct: 1141 LNPEISKTKERAKNVQCTLEYTCLRSVTHATEVWYDPDPMSTLIDEDVDFVRSYYEMPDE 1200
Query: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIR 1260
EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFSDDMTCIFTDDNAEKLILRIR
Sbjct: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIR 1260
Query: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF
Sbjct: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
Query: 1321 KAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
KAETEWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF
Sbjct: 1321 KAETEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
Query: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
Query: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISG 1500
DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIE+QLPSY EGLEFGMTPARSPI+G
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIELQLPSYVEGLEFGMTPARSPIAG 1500
Query: 1501 TPYHDGMMSPNYLLSPNVRHSPFAD-ASFSPYVGAMGFSPAASPAY------HSPQSPGY 1560
TPYHDGMMSP+YL SPN+RHSP ++ A+FSP+V M FSPAASP Y +SP SPGY
Sbjct: 1501 TPYHDGMMSPSYLFSPNLRHSPISENAAFSPFVTNMAFSPAASPNYGGGSPGYSPTSPGY 1560
Query: 1561 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1620
SPTSPGYSPTSPGYSPTSP YSP+SP YSP SP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1561 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1620
Query: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
Query: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY
Sbjct: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
Query: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP
Sbjct: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
Query: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
QYSPSAGYSPSAPGYSPSSTSQYTPQ SDKDDKS R
Sbjct: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQTSDKDDKSSR 1836
BLAST of Spo24266.1 vs. NCBI nr
Match:
gi|870855195|gb|KMT06928.1| (hypothetical protein BVRB_6g152650 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 3417.5 bits (8860), Expect = 0.000e+0
Identity = 1747/1836 (95.15%), Postives = 1782/1836 (97.06%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
Sbjct: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQD--DEEPAKKSRGGCGAQQPTF 180
FKQALKIRNPKNRLK+ILEACKNK+KCEGGDS+DVQDQD D E AKK+RGGCGAQQPTF
Sbjct: 121 FKQALKIRNPKNRLKRILEACKNKKKCEGGDSLDVQDQDQDDGESAKKTRGGCGAQQPTF 180
Query: 181 TIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRY 240
TIEGMKIIAEYKMTKKK+DEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNP+Y
Sbjct: 181 TIEGMKIIAEYKMTKKKSDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKY 240
Query: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI
Sbjct: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
Query: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS
Sbjct: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
Query: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYI 420
ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN+ERLKELVDYGPHPPPGKTGAKYI
Sbjct: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 420
Query: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
Query: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ
Sbjct: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
Query: 541 DTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQ 600
DTLLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPIWTGKQVFNLIIPKQ
Sbjct: 541 DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQ 600
Query: 601 INLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
INL+RFSAWHQETETGFLTPGDTRV++ERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD
Sbjct: 601 INLIRFSAWHQETETGFLTPGDTRVMVERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
Query: 661 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEK 720
AARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTMETIN TIS+AKNEVKNLIR AQEK
Sbjct: 661 AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETINETISKAKNEVKNLIRTAQEK 720
Query: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQ 780
QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSL E+NNLKAMVTAGSKGSFINISQ
Sbjct: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQ 780
Query: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
Query: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
Query: 901 QKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDR 960
QKLDSLKMKK+EF+ATYRYE DA+NWEPDYMLKEHVDDLK+IREFRNVFDAEVQKLE DR
Sbjct: 901 QKLDSLKMKKTEFEATYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADR 960
Query: 961 CQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRV 1020
CQLA DIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKS MHPMEIVEAVD+LQERL+V
Sbjct: 961 CQLAKDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSNMHPMEIVEAVDQLQERLKV 1020
Query: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVA 1080
VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEF+LNREAFDWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFKLNREAFDWVIGEIESRFLQSLVA 1080
Query: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
Query: 1141 LNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDE 1200
LNPEISKTKERAKNVQC LEYTCLRSVTHATEVW SYYEMPDE
Sbjct: 1141 LNPEISKTKERAKNVQCTLEYTCLRSVTHATEVW------------------SYYEMPDE 1200
Query: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIR 1260
EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFSDDMTCIFTDDNAEKLILRIR
Sbjct: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIR 1260
Query: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF
Sbjct: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
Query: 1321 KAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
KAETEWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF
Sbjct: 1321 KAETEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
Query: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
Query: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISG 1500
DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIE+QLPSY EGLEFGMTPARSPI+G
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIELQLPSYVEGLEFGMTPARSPIAG 1500
Query: 1501 TPYHDGMMSPNYLLSPNVRHSPFAD-ASFSPYVGAMGFSPAASPAY------HSPQSPGY 1560
TPYHDGMMSP+YL SPN+RHSP ++ A+FSP+V M FSPAASP Y +SP SPGY
Sbjct: 1501 TPYHDGMMSPSYLFSPNLRHSPISENAAFSPFVTNMAFSPAASPNYGGGSPGYSPTSPGY 1560
Query: 1561 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1620
SPTSPGYSPTSPGYSPTSP YSP+SP YSP SP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1561 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1620
Query: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
Query: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY
Sbjct: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
Query: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP
Sbjct: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
Query: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
QYSPSAGYSPSAPGYSPSSTSQYTPQ SDKDDKS R
Sbjct: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQTSDKDDKSSR 1818
BLAST of Spo24266.1 vs. NCBI nr
Match:
gi|225459758|ref|XP_002285900.1| (PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera])
HSP 1 Score: 3254.5 bits (8437), Expect = 0.000e+0
Identity = 1639/1846 (88.79%), Postives = 1742/1846 (94.37%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MD RFPYSPAEV+KV ++QFGILSPDEIRQMSVVQ+E SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRK+KC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQA KIRNPKNRLKKIL+ACKNK KCEGGD I+ Q D +EP KKSRGGCGAQQP TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMK+IAEYK+ +KKND+ EQLPEP ERKQQLSAE+VL+VLKR+SDEDC L+G NP+YAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELV+YGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
L+R SAWH E+ETGF+TPGDT+V IE+GELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN TIS+AKNEVK LIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
E EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SL E+NNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
LDSLKMKK EFD ++YEID ENW P YML EHV+DLK+IREFRNVFDAEVQKLE DR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
L T+IATTGDNSWP+PVNLKRL+WNAQKTFKVD+R S MHPMEIVEAVDKLQERL+VVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
GDD +S EAQKNATLFFNILLRST +SKRVLKE+RL REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1141 PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEV 1200
P++SKTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTII EDVDFVKSYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
+P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNAEKLILRIRI+
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
NDE KG+++D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIK KVNKFDE +GFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
E EWMLDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
LRGVTENIMLGQLAPIGTG C+LYLN++MLQHAIE+QLPSY EGL+FGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAY-------------HSPQ 1560
YHDGMMSPNYLLSPN+R SP DA FSPYVG M FSP +SP Y +SP
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1561 SPGYSPTSPGYSPTSPGYSPT-------SPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSY 1620
SPGYSPTSPGYSPTSPGYSPT SPGYSPTSP YSP SPSYSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
SPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+YSPTSPAYSPTSP+YSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTS 1680
Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 1741 P-SAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYS 1800
P SAKYSPSLAYSPSSPR+SPSSPYSPTSPNYSPTSPSYSPTSPSYSP+SP+YSP+SPY+
Sbjct: 1741 PSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYN 1800
Query: 1801 SGPSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKS 1826
SG SPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMS+KD+ S
Sbjct: 1801 SGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1846
BLAST of Spo24266.1 vs. NCBI nr
Match:
gi|720035010|ref|XP_010266907.1| (PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo nucifera])
HSP 1 Score: 3239.9 bits (8399), Expect = 0.000e+0
Identity = 1638/1848 (88.64%), Postives = 1736/1848 (93.94%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKV +QFGILSPD IRQMSVVQ+E SETTE+GKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVSKVRRVQFGILSPDVIRQMSVVQIEHSETTEKGKPKPGGLSDTRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRK+KC+TC ANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQA +IRNPKNRLKK+L+ACKNK KCEGGD I+VQ QD EP KK RGGCGAQQP TI
Sbjct: 121 FKQAQRIRNPKNRLKKVLDACKNKTKCEGGDEIEVQGQDTGEPIKKRRGGCGAQQPKLTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMK+IAEYK +KKND+QEQLPEP ERKQQLSAE+VLSVLKR+SDEDC L+G NP YAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCILLGLNPEYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHN+NLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELV+YGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
L+R SAWH E+ETGF+TPGDT+V IERGELL+GTLCKKTLG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LMRTSAWHSESETGFITPGDTQVRIERGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN TIS+AKNEVK LIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
E EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SL E+NNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
LDSLKM+KSEFD +RYEID ENW P YML EHV+DLK+IREFRNVFDAEVQKLE DR Q
Sbjct: 901 LDSLKMRKSEFDKVFRYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQ 960
Query: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
L T+IATTGDN+WP+PVNLKRL+WNAQKTFKVD+R S MHPMEIVEAVDKLQERL+VVP
Sbjct: 961 LGTEIATTGDNNWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
GDDFLS EAQKNATLFFNILLRST +SKRVLKE+RL REAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1141 PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEV 1200
PE++KTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTII EDVDFVKSYYEMPDEEV
Sbjct: 1141 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
+P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNAEKLILRIRI+
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
NDE KG+++D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIK KVNKFDE +GFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
E EWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEV+EVLGIEAVR+ALLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDC 1440
Query: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
LRGVTENIMLGQLAPIGTG C+LYLN++MLQ AIE+QLPSY EGL+FGMTP+RSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 1500
Query: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAY-------------HSPQ 1560
Y++GMMSP+YLLSPN R SP DA FSPYVG M FSP +SP Y +SP
Sbjct: 1501 YNEGMMSPSYLLSPNARLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1561 SPGYSPTSPGYSPTSPGYSPT-------SPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSY 1620
SPGYSPTSPGYSPTSPGYSPT SPGYSPTSP YSP SPSYSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
SPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSPTSPAYSPTSP+YSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS 1680
Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 1741 -PSAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYS 1800
PSAKYSPSLAYSPSSPR+SPSSPYS TSPNYSPTSPSYSPTSPSYSP SP+YSPSSP++
Sbjct: 1741 PPSAKYSPSLAYSPSSPRLSPSSPYSQTSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPFN 1800
Query: 1801 SGPSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
SG SPDYSPSSPQYSPSAGYSP+APGYSPSSTSQYTPQ+S+KD+ S R
Sbjct: 1801 SGISPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQLSNKDEGSTR 1848
BLAST of Spo24266.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9RSK8_SPIOL (DNA-directed RNA polymerase subunit OS=Spinacia oleracea GN=SOVF_040130 PE=3 SV=1)
HSP 1 Score: 3523.0 bits (9134), Expect = 0.000e+0
Identity = 1805/1827 (98.80%), Postives = 1805/1827 (98.80%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
Sbjct: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK
Sbjct: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI
Sbjct: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR
Sbjct: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
Sbjct: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ
Sbjct: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
Query: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP
Sbjct: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
Query: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
Query: 1141 PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEV 1200
PEISKTKERAKNVQ PMSTIINEDVDFVKSYYEMPDEEV
Sbjct: 1141 PEISKTKERAKNVQY---------------------PMSTIINEDVDFVKSYYEMPDEEV 1200
Query: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
Query: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA
Sbjct: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
Query: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG
Sbjct: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
Query: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
Query: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP 1560
YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP
Sbjct: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYSP 1560
Query: 1561 TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620
TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620
Query: 1621 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1680
YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1680
Query: 1681 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP 1740
SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP
Sbjct: 1681 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISP 1740
Query: 1741 SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS 1800
SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS
Sbjct: 1741 SSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSAGYS 1800
Query: 1801 PSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
PSAPGYSPSSTSQYTPQMSDKDDKSKR
Sbjct: 1801 PSAPGYSPSSTSQYTPQMSDKDDKSKR 1806
BLAST of Spo24266.1 vs. UniProtKB/TrEMBL
Match:
A0A0J8C4F6_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g152650 PE=3 SV=1)
HSP 1 Score: 3417.5 bits (8860), Expect = 0.000e+0
Identity = 1747/1836 (95.15%), Postives = 1782/1836 (97.06%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
Sbjct: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQD--DEEPAKKSRGGCGAQQPTF 180
FKQALKIRNPKNRLK+ILEACKNK+KCEGGDS+DVQDQD D E AKK+RGGCGAQQPTF
Sbjct: 121 FKQALKIRNPKNRLKRILEACKNKKKCEGGDSLDVQDQDQDDGESAKKTRGGCGAQQPTF 180
Query: 181 TIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRY 240
TIEGMKIIAEYKMTKKK+DEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNP+Y
Sbjct: 181 TIEGMKIIAEYKMTKKKSDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKY 240
Query: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI
Sbjct: 241 ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHI 300
Query: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS
Sbjct: 301 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFS 360
Query: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYI 420
ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYN+ERLKELVDYGPHPPPGKTGAKYI
Sbjct: 361 ARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 420
Query: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY
Sbjct: 421 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 480
Query: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ
Sbjct: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQ 540
Query: 541 DTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQ 600
DTLLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVPQP ILKPRPIWTGKQVFNLIIPKQ
Sbjct: 541 DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQ 600
Query: 601 INLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
INL+RFSAWHQETETGFLTPGDTRV++ERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD
Sbjct: 601 INLIRFSAWHQETETGFLTPGDTRVMVERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPD 660
Query: 661 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEK 720
AARKFLGHTQWLVNYWLLQ AFSIGIGDTIADASTMETIN TIS+AKNEVKNLIR AQEK
Sbjct: 661 AARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMETINETISKAKNEVKNLIRTAQEK 720
Query: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQ 780
QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSL E+NNLKAMVTAGSKGSFINISQ
Sbjct: 721 QLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQ 780
Query: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 781 MTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
Query: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES
Sbjct: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
Query: 901 QKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDR 960
QKLDSLKMKK+EF+ATYRYE DA+NWEPDYMLKEHVDDLK+IREFRNVFDAEVQKLE DR
Sbjct: 901 QKLDSLKMKKTEFEATYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADR 960
Query: 961 CQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRV 1020
CQLA DIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKS MHPMEIVEAVD+LQERL+V
Sbjct: 961 CQLAKDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSNMHPMEIVEAVDQLQERLKV 1020
Query: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVA 1080
VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEF+LNREAFDWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFKLNREAFDWVIGEIESRFLQSLVA 1080
Query: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1140
Query: 1141 LNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDE 1200
LNPEISKTKERAKNVQC LEYTCLRSVTHATEVW SYYEMPDE
Sbjct: 1141 LNPEISKTKERAKNVQCTLEYTCLRSVTHATEVW------------------SYYEMPDE 1200
Query: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIR 1260
EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EFSDDMTCIFTDDNAEKLILRIR
Sbjct: 1201 EVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIR 1260
Query: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF
Sbjct: 1261 IVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGF 1320
Query: 1321 KAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
KAETEWMLDTEGVNLLAVMCHE+VD+TRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF
Sbjct: 1321 KAETEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVMEVLGIEAVRKALLDELRVVISF 1380
Query: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAES 1440
Query: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISG 1500
DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIE+QLPSY EGLEFGMTPARSPI+G
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIELQLPSYVEGLEFGMTPARSPIAG 1500
Query: 1501 TPYHDGMMSPNYLLSPNVRHSPFAD-ASFSPYVGAMGFSPAASPAY------HSPQSPGY 1560
TPYHDGMMSP+YL SPN+RHSP ++ A+FSP+V M FSPAASP Y +SP SPGY
Sbjct: 1501 TPYHDGMMSPSYLFSPNLRHSPISENAAFSPFVTNMAFSPAASPNYGGGSPGYSPTSPGY 1560
Query: 1561 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1620
SPTSPGYSPTSPGYSPTSP YSP+SP YSP SP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1561 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1620
Query: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1621 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1680
Query: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY
Sbjct: 1681 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAY 1740
Query: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP
Sbjct: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
Query: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
QYSPSAGYSPSAPGYSPSSTSQYTPQ SDKDDKS R
Sbjct: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQTSDKDDKSSR 1818
BLAST of Spo24266.1 vs. UniProtKB/TrEMBL
Match:
F6H0D9_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_18s0001g00860 PE=3 SV=1)
HSP 1 Score: 3248.8 bits (8422), Expect = 0.000e+0
Identity = 1639/1850 (88.59%), Postives = 1742/1850 (94.16%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MD RFPYSPAEV+KV ++QFGILSPDEIRQMSVVQ+E SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRK+KC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQA KIRNPKNRLKKIL+ACKNK KCEGGD I+ Q D +EP KKSRGGCGAQQP TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMK+IAEYK+ +KKND+ EQLPEP ERKQQLSAE+VL+VLKR+SDEDC L+G NP+YAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSE----DDLTHQLAMIIRHNDNLRRQERNGAPA 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSE DDLTHQLAMIIRHN+NLRRQERNGAPA
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEASLSDDLTHQLAMIIRHNENLRRQERNGAPA 300
Query: 301 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVD 360
HIISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVD
Sbjct: 301 HIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 360
Query: 361 FSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAK 420
FSARTVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELV+YGPHPPPGKTGAK
Sbjct: 361 FSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 420
Query: 421 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 480
YIIR+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM
Sbjct: 421 YIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 480
Query: 481 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGI 540
PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGI
Sbjct: 481 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 540
Query: 541 VQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIP 600
VQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRP+WTGKQVFNLIIP
Sbjct: 541 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIP 600
Query: 601 KQINLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVG 660
KQINL+R SAWH E+ETGF+TPGDT+V IE+GELL+GTLCKKTLG+S+GSLIHVIWEEVG
Sbjct: 601 KQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVG 660
Query: 661 PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQ 720
PDAARKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN TIS+AKNEVK LIRAAQ
Sbjct: 661 PDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQ 720
Query: 721 EKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINI 780
E+QLE EPGRTMMESFENRVNQVLNKARDDAGSSAQ+SL E+NNLKAMVTAGSKGSFINI
Sbjct: 721 ERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINI 780
Query: 781 SQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 840
SQMTACVGQQNVEGKRIP+GF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 781 SQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 840
Query: 841 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 900
GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI
Sbjct: 841 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWI 900
Query: 901 ESQKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEV 960
E+QKLDSLKMKK EFD ++YEID ENW P YML EHV+DLK+IREFRNVFDAEVQKLE
Sbjct: 901 ETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEA 960
Query: 961 DRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERL 1020
DR QL T+IATTGDNSWP+PVNLKRL+WNAQKTFKVD+R S MHPMEIVEAVDKLQERL
Sbjct: 961 DRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERL 1020
Query: 1021 RVVPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSL 1080
+VVPGDD +S EAQKNATLFFNILLRST +SKRVLKE+RL REAF+WVIGEIESRFLQSL
Sbjct: 1021 KVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSL 1080
Query: 1081 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1140
VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS
Sbjct: 1081 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1140
Query: 1141 VFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMP 1200
V+L P++SKTKERAKNVQC LEYT LRSVT ATEVWYDPDPMSTII EDVDFVKSYYEMP
Sbjct: 1141 VYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMP 1200
Query: 1201 DEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILR 1260
DEEV+P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNAEKLILR
Sbjct: 1201 DEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILR 1260
Query: 1261 IRIVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEK 1320
IRI+NDE KG+++D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIK KVNKFDE +
Sbjct: 1261 IRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESE 1320
Query: 1321 GFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVI 1380
GFK E EWMLDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR++LLDELRVVI
Sbjct: 1321 GFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVI 1380
Query: 1381 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYA 1440
SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYA
Sbjct: 1381 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYA 1440
Query: 1441 ESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPI 1500
E+D+LRGVTENIMLGQLAPIGTG C+LYLN++MLQHAIE+QLPSY EGL+FGMTP+RSPI
Sbjct: 1441 ETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPI 1500
Query: 1501 SGTPYHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAY------------- 1560
+GTPYHDGMMSPNYLLSPN+R SP DA FSPYVG M FSP +SP Y
Sbjct: 1501 TGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG 1560
Query: 1561 HSPQSPGYSPTSPGYSPTSPGYSPT-------SPGYSPTSPTYSPGSPSYSPTSPAYSPT 1620
+SP SPGYSPTSPGYSPTSPGYSPT SPGYSPTSP YSP SPSYSPTSP+YSPT
Sbjct: 1561 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1620
Query: 1621 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1680
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+YSPTSPAYSPTSP+YSPTSPSY
Sbjct: 1621 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSY 1680
Query: 1681 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTS 1740
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTS
Sbjct: 1681 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTS 1740
Query: 1741 PSYNP-SAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPS 1800
PSYNP SAKYSPSLAYSPSSPR+SPSSPYSPTSPNYSPTSPSYSPTSPSYSP+SP+YSP+
Sbjct: 1741 PSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPT 1800
Query: 1801 SPYSSGPSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKS 1826
SPY+SG SPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMS+KD+ S
Sbjct: 1801 SPYNSGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1850
BLAST of Spo24266.1 vs. UniProtKB/TrEMBL
Match:
A0A059ARU8_EUCGR (DNA-directed RNA polymerase subunit OS=Eucalyptus grandis GN=EUGRSUZ_I02304 PE=3 SV=1)
HSP 1 Score: 3217.9 bits (8342), Expect = 0.000e+0
Identity = 1626/1848 (87.99%), Postives = 1731/1848 (93.67%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MD RFP+SPAEV+KV L+QFGILSPDEIRQMSVVQ+E ETTERGKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRLVQFGILSPDEIRQMSVVQIEHGETTERGKPKIAGLSDPRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKC+TCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKIL DEDDHK
Sbjct: 61 DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILTDEDDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQAL+IRNPKNRLKKIL+ACKNK KC+GGD +D + Q EEP KK+ GGCGAQQP TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCDGGDDVDTKGQGSEEPKKKNHGGCGAQQPKLTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
EGMK+IAEYK +KKND+Q+Q+PEP ERKQ LSAE+VLSVLKR+SDE CQL+G NP+YAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQDQIPEPVERKQTLSAERVLSVLKRISDEHCQLLGLNPKYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHN+NLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRQQERNGAPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELV+YGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRK+TKRDTFIEKDVFMN+LMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNVLMWWEDFDGKVPTPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
L+R SAWH ETETGF+TPGDT+V IE+GELLSGTLCKK LG+S+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TME IN TIS AK+EVK LI+ AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISSAKDEVKRLIKDAQEKKL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
EPEPGRTMMESFEN+VNQVLNKARDDAGSSAQ+SL E+NNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIPFGF+GRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 960
LDSLKMKK+EFD +RYEID ENW PDYML E+ +DL+SI E R+VFDAEVQKLE DR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEIDDENWNPDYMLPENAEDLRSIGELRDVFDAEVQKLEADRYQ 960
Query: 961 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1020
L T+IATTGDN+WPLPVNLKRL+WNAQKTFK+D+R S +HP+E+VEA+DKLQERL+VVP
Sbjct: 961 LGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDIHPVEVVEAIDKLQERLKVVP 1020
Query: 1021 GDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPG 1080
G+D LS EAQKNATLFFNILLRST +SKRVLKE+RL REAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN 1140
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1141 PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEV 1200
PE+SKTKE AK VQC LEYT LRSVT ATEVWYDPDP ST I ED+DFVKSY EMPDEE+
Sbjct: 1141 PEVSKTKENAKTVQCALEYTTLRSVTQATEVWYDPDPTSTRIEEDIDFVKSYIEMPDEEI 1200
Query: 1201 SPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRIV 1260
SP+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+ CIF DDNA+KLILRIRI+
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLNCIFNDDNADKLILRIRIM 1260
Query: 1261 NDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA 1320
NDE KG++ D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIK KVNKF+E GFK
Sbjct: 1261 NDEVPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNKFNENDGFKP 1320
Query: 1321 ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG 1380
ETEWMLDTEGVNLLAVMCHE VD+TRTTSNHLIE++EVLGIEAVR++LLDELRVVISFDG
Sbjct: 1321 ETEWMLDTEGVNLLAVMCHEGVDATRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY 1440
Query: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGTP 1500
LRGVTENIMLGQLAPIGTG C+LYLN+EML+HAIE+QLPSY +GL+FGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKHAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1501 YHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAY------HSPQSPGYSPT 1560
YH+GMMSP+YLLSPN+R SP DA FSPYVG M FSPA+SP Y +SP SPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPASSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
SPGYSPTSPGYSPTSPGYSPTSPTYSP SP YSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1621 SPTSPSYSPTSPAYSPTSPAYSPTSP--------------AYSPTSPSYSPTSPSYSPTS 1680
SPTSPSYSPTSP+YSPTSP+YSPTSP AYSPTSP+YSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTS 1680
Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 1741 P-SAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYS 1800
P SAKYSPSLAYSPSSPR+SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSP+YSPSSPY+
Sbjct: 1741 PQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYN 1800
Query: 1801 SGPSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR 1828
SG SPDYSPSSPQYSPSAGYSPSAPGYSP+STSQYTP S+KDD+SK+
Sbjct: 1801 SGVSPDYSPSSPQYSPSAGYSPSAPGYSPASTSQYTP--SNKDDRSKK 1846
BLAST of Spo24266.1 vs. UniProtKB/TrEMBL
Match:
A0A0D2SMR9_GOSRA (DNA-directed RNA polymerase subunit OS=Gossypium raimondii GN=B456_007G190500 PE=3 SV=1)
HSP 1 Score: 3211.8 bits (8326), Expect = 0.000e+0
Identity = 1626/1846 (88.08%), Postives = 1736/1846 (94.04%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MD RFPYSPAEV+KV ++QFGILSPDEIRQMSVVQ+E SETTERGKPK GGLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRKLKC+TCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 180
FKQALKI+NPKNRLKKIL+ACKNK KCEGGD IDVQ QD EEP KKSRGGCGAQQP TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDAEEPVKKSRGGCGAQQPKLTI 180
Query: 181 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 240
+GMK+IAEYK +KKND+ EQLPEP ERKQ L+AE+VLSVLKR+SDEDCQL+G NP+YAR
Sbjct: 181 DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 240
Query: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 300
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTH LAMIIRHN+NLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 360
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 420
TVITPDPNINIDELGVPWSIALNLTYPETVTPYN+ERLKELV+YGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 540
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+N+PVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 600
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 601 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 660
L+R SAWH E+ETG +TPGDT+V IE+GE+LSGTLCKKTLG+SSGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 720
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTME IN TIS+AK++VK LI AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKDDVKQLIVKAQNKDL 720
Query: 721 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 780
EPEPGRTMMESFEN+VNQVLNKARDDAG+SAQ+SL E+NNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 781 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
ACVGQQNVEGKRIPFGF+ RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 901 LDSLKMKKSEFDATYRYEIDAENWEP-DYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRC 960
LDSLKMKKSEFD +RY+ID ENW P YML EH++DL++I+E R+VFDAEV KLE DR
Sbjct: 901 LDSLKMKKSEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRY 960
Query: 961 QLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVV 1020
QL T+IA TGD++WPLPVNLKRL+WNAQKTFKVD R S +HP+EIV++VDKLQERL+VV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 1021 PGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAP 1080
PG D LS EAQKNATLFF ILLRSTL+SKRVL+E+RL +EAF+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGADPLSVEAQKNATLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 1141 NPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEE 1200
+PE SKTKE+AKNVQC LEYT LRSVTHATEVWYDPDPMSTII ED+DFVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
Query: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRI 1260
V+P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 1261 VNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFK 1320
+NDE KG++ D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIK SK +KFDE G+K
Sbjct: 1261 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 1321 AETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFD 1380
EW+LDTEGVNLLAVMCHE+VD+ RTTSNHLIEV+EVLGIEAVR++LLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAESD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 1441 YLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGT 1500
YLRGVTENIMLGQLAPIGTG C+LYLN+EML++AIE+QLPSY EGLEFGMTPARSP+SGT
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1500
Query: 1501 PYHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAY------HSPQSPGYSP 1560
PYH+GMMSP+YLLSPN+R SP +DA FSPYVG M FSP +SP Y +SP SPGYSP
Sbjct: 1501 PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
TSPGYSPTSPGYSPTSPGYSPTSPTYSP SP YSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
Query: 1621 YSPTSPSYSPTSPAYSPTSPA-------YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1680
YSPTSPSYSPTSP+YSPTSP+ YSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680
Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP-SAKY 1740
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP SAKY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 1740
Query: 1741 SPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPD 1800
SPSLAYSPSSPR+SPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSP+YSPSSPY+SG SPD
Sbjct: 1741 SPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPD 1800
Query: 1801 YSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ----MSDKDDKSKR 1828
YSPSSPQYSPSAGYSPSAPGYSP+STSQYTP S+KDD+SKR
Sbjct: 1801 YSPSSPQYSPSAGYSPSAPGYSPTSTSQYTPSNKDGRSNKDDRSKR 1846
BLAST of Spo24266.1 vs. ExPASy Swiss-Prot
Match:
NRPB1_ARATH (DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis thaliana GN=NRPB1 PE=1 SV=3)
HSP 1 Score: 3147.8 bits (8160), Expect = 0.000e+0
Identity = 1586/1834 (86.48%), Postives = 1709/1834 (93.18%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFP+SPAEVSKV ++QFGILSPDEIRQMSV+ VE SETTE+GKPK GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRK+KC+TC ANMAECPGHFG+LELAKPM+H+GF+KTVLSIMRCVCFNCSKILADE++HK
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSID-VQDQDDEEPAKKSRGGCGAQQPTFT 180
FKQA+KI+NPKNRLKKIL+ACKNK KC+GGD ID VQ +EP KKSRGGCGAQQP T
Sbjct: 121 FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180
Query: 181 IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYA 240
IEGMK+IAEYK+ +KKNDE +QLPEPAERKQ L A++VLSVLKR+SD DCQL+GFNP++A
Sbjct: 181 IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240
Query: 241 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 300
RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 241 RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300
Query: 301 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 360
SEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301 SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
Query: 361 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYII 420
RTVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELVDYGPHPPPGKTGAKYII
Sbjct: 361 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420
Query: 421 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421 RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480
Query: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQD 540
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN+PVMGIVQD
Sbjct: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
Query: 541 TLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQI 600
TLLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQI
Sbjct: 541 TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600
Query: 601 NLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDA 660
NL+R+SAWH +TETGF+TPGDT+V IERGELL+GTLCKKTLG+S+GSL+HVIWEEVGPDA
Sbjct: 601 NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660
Query: 661 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQ 720
ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD+STME IN TIS AK VK+LIR Q K+
Sbjct: 661 ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720
Query: 721 LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQM 780
L+PEPGRTM ++FENRVNQVLNKARDDAGSSAQ+SL ETNNLKAMVTAGSKGSFINISQM
Sbjct: 721 LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780
Query: 781 TACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
TACVGQQNVEGKRIPFGF GRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781 TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
Query: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
Query: 901 KLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRC 960
KLDSLKMKKSEFD T++YEID ENW P Y+ EH++DLK IRE R+VFDAE KLE DR
Sbjct: 901 KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960
Query: 961 QLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVV 1020
QL T+IAT GD++WPLPVN+KR +WNAQKTFK+D+R+ S MHP+EIV+AVDKLQERL VV
Sbjct: 961 QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020
Query: 1021 PGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAP 1080
PGDD LS EAQKNATLFFNILLRSTL+SKRVL+E++L+REAF+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080
Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
Query: 1141 NPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEE 1200
PE SK+KE AK VQC LEYT LRSVT ATEVWYDPDPMSTII ED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200
Query: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRI 1260
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260
Query: 1261 VNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFK 1320
+NDEG KG+++D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIKQ + ++FDEE GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320
Query: 1321 AETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFD 1380
EWMLDTEGVNLLAVMCHE+VD RTTSNHLIE++EVLGIEAVR+ALLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380
Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA YAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440
Query: 1441 YLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGT 1500
LRGVTENIMLGQLAPIGTG C LYLN+EML++AIE+QLPSY +GLEFGMTPARSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500
Query: 1501 PYHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYS 1560
PYH+GMMSPNYLLSPN+R SP +DA FSPYVG M FSP++SP Y SP SPGYSPTSPGYS
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGY-SPSSPGYSPTSPGYS 1560
Query: 1561 PTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPA-------YSPTSPSYSPTSPSYSPTSP 1620
PTSPGYSPTSPGYSPTSPTYSP SP YSPTSPA YSPTSPSYSPTSPSYSPTSP
Sbjct: 1561 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
Query: 1621 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
SYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP-SAKYSPSLAY 1740
TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNP SAKYSPS+AY
Sbjct: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAY 1740
Query: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
SPS+ R+SP+SPYSPTSPNYSPTSPSYSPTSPSYSPSSP+YSPSSPYSSG SPD
Sbjct: 1741 SPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD------ 1800
Query: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKS 1826
YSPSAGYSP+ PGYSPSST QYTP DK DK+
Sbjct: 1801 -YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKT 1826
BLAST of Spo24266.1 vs. ExPASy Swiss-Prot
Match:
RPB1_DICDI (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum GN=polr2a PE=2 SV=2)
HSP 1 Score: 2146.3 bits (5560), Expect = 0.000e+0
Identity = 1109/1746 (63.52%), Postives = 1366/1746 (78.24%), Query Frame = 1
Query: 5 FPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTIDRKL 64
FP S AE+ KV +QFGILSPDEIR MSV +VE ET E GKPK GGL D +GTID+
Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64
Query: 65 KCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHKFKQA 124
+C TC+ MAECPGHFGH+ELAKP+FHIGF+ TVL I+RCVC++CSK+L D ++H F+QA
Sbjct: 65 RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124
Query: 125 LKIRNPKNRLKKILEACKNKRKCEGG----DSIDVQDQDDEEPAKKSRGGCGAQQPTFTI 184
LKIRN K+RL +++ CKNK+ C G + D+ D+E GGCG P T
Sbjct: 125 LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITK 184
Query: 185 EGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYAR 244
E +KII E+K + E E+K LSAE+VL++LKR+ DED + MG NP +AR
Sbjct: 185 EDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWAR 244
Query: 245 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS 304
DWMI VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N L+RQE+NGAPAHII+
Sbjct: 245 ADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIA 304
Query: 305 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR 364
E Q LQFH+ATY DNE+PG P+A QRSGRP+KSI RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 305 EATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSAR 364
Query: 365 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR 424
TVIT DPN++ID++GVP SIALNLTYPETVTP+N+++++EL+ GP PG AKYIIR
Sbjct: 365 TVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AKYIIR 424
Query: 425 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 484
+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPYST
Sbjct: 425 EDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYST 484
Query: 485 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDT 544
FRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQ+N+PVMGIVQDT
Sbjct: 485 FRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDT 544
Query: 545 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQIN 604
LLG R TKRD F+EKD+ MNILMW +DGKVP P ILKP+ +WTGKQ+F+LIIP IN
Sbjct: 545 LLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DIN 604
Query: 605 LVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA 664
L+RF++ H + E + GDTRV+IERGELL+G LCK++LG+++GS+IHV+ E G D
Sbjct: 605 LIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDTC 664
Query: 665 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQL 724
R F+ TQ +VN+WL+ F++GIGDTIAD++TM + +TIS AKN+VK LI AQ KQ
Sbjct: 665 RLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQF 724
Query: 725 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMT 784
E +PG++++E+FE +VNQVLNKARD AGSSAQ SL E NNLKAMVTAGSKGSFINISQM
Sbjct: 725 ECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMM 784
Query: 785 ACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 844
ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 785 ACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 844
Query: 845 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 904
GLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D ++E+Q
Sbjct: 845 GLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQS 904
Query: 905 LDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQ 964
+DSL+ +E + YR+++D ++ +M ++ +++ R+ + E ++++ DR
Sbjct: 905 IDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRSL 964
Query: 965 LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVP 1024
L +I +G+ +WPLPVNL+RL+ NAQK F +D+R S ++P +V ++KL RL+++
Sbjct: 965 LRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIA 1024
Query: 1025 GDDFLS---------KEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESR 1084
D E NAT+ F+IL+RST +SKRVL EFRL +AF WV GEIES+
Sbjct: 1025 TADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESK 1084
Query: 1085 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1144
FLQ+L PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK++K
Sbjct: 1085 FLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQVK 1144
Query: 1145 TPSLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKS 1204
TPSL+++L P +++ +RAK V+ LEYT L +VT ATE++YDPDP +TII+ED +FV S
Sbjct: 1145 TPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNS 1204
Query: 1205 YYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAE 1264
Y+E+PDEE+ +SPWLLRIEL+R M+ DKKL+MADI + + +F + CIF+DDNAE
Sbjct: 1205 YFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAE 1264
Query: 1265 KLILRIRIVNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIK-QSKVN 1324
KLILRIR+V + KG DD DD FL+++ +ML+EM L+GI I KVF++ K+
Sbjct: 1265 KLILRIRMVESQETKGTDNDD---DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIP 1324
Query: 1325 KFDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLD 1384
K E GF EW+LDT+GV+LL VM H +VD TRTTSN ++E+++VLGIEAVR ALL
Sbjct: 1325 KVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLK 1384
Query: 1385 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILL 1444
ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGPLMRCSFEETV+IL+
Sbjct: 1385 ELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILM 1444
Query: 1445 DAAVYAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMT 1504
DAA+++E+D ++GVTENI+LGQL P+GTG ++LN++M+++A + LP + + T
Sbjct: 1445 DAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPE-PSNVSYPDT 1504
Query: 1505 PARSPISGTPYHDGMMSPNYLLSPNVRHSPFADASFSPYVGAM--GFSPAA--SPAYHSP 1564
P S Y DG +P H+P+ DA SP+ FSP+A SP Y++
Sbjct: 1505 PG-SQTPSYSYGDGSTTP--------FHNPY-DAPLSPFNETFRGDFSPSAMNSPGYNAN 1564
Query: 1565 QSPG----YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYSP 1624
+S G Y P SP YSPTSP YSPTSP YSPTSP+YSP SPSYSPTSP+YSPTSPSYSP
Sbjct: 1565 KSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624
Query: 1625 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1684
TSP YSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1625 TSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684
Query: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPS 1729
YSPTSPSYSPTSPSYSPTSPSYSPTSP+YSP+SP YSP+SPSYSP+SPSYSP+SP++
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTFTNK 1723
BLAST of Spo24266.1 vs. ExPASy Swiss-Prot
Match:
RPB1_MOUSE (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a PE=1 SV=3)
HSP 1 Score: 2041.5 bits (5288), Expect = 0.000e+0
Identity = 1103/1868 (59.05%), Postives = 1396/1868 (74.73%), Query Frame = 1
Query: 8 SPAEVSKVHLIQFGILSPDEIRQMSVVQ--VEFSETTERGKPKPGGLSDMRLGTIDRKLK 67
S + + +QFG+LSPDE+++MSV + +++ ETTE G+PK GGL D R G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 68 CDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHKFKQAL 127
C TC NM ECPGHFGH+ELAKP+FH+GFL + ++RCVCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 128 KIRN--PKNRLKKILEACKNKRKCEGGDSID-----VQDQDDEEPAK-KSRGGCGAQQPT 187
PK RL + + CK K CEGG+ +D Q + DE+ K K GGCG QP
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 188 FTIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPR 247
G+++ AE+K + + E++ L LS E+V + KR+SDE+C ++G PR
Sbjct: 191 IRRSGLELYAEWKHVNEDSQEKKIL---------LSPERVHEIFKRISDEECFVLGMEPR 250
Query: 248 YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAH 307
YARP+WMI+ VLP+PP VRP+V+M S+R++DDLTH+LA I++ N+ LRR E+NGA AH
Sbjct: 251 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310
Query: 308 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDF 367
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 311 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370
Query: 368 SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKY 427
SARTVITPDPN++ID++GVP SIA N+T+ E VTP+N++RL+ELV G PG AKY
Sbjct: 371 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 430
Query: 428 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490
Query: 488 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIV 547
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+N+PVMGIV
Sbjct: 491 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550
Query: 548 QDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPK 607
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRP+WTGKQ+F+LIIP
Sbjct: 551 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610
Query: 608 QINLVRFSAWHQETETG----FLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWE 667
IN +R + H + E ++PGDT+V++E GEL+ G LCKK+LG+S+GSL+H+ +
Sbjct: 611 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670
Query: 668 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIR 727
E+G D R F + Q ++N WLL +IGIGD+IAD+ T + I TI +AK +V +I
Sbjct: 671 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730
Query: 728 AAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSF 787
A +LEP PG T+ ++FEN+VN++LN ARD GSSAQ+SL E NN K+MV +G+KGS
Sbjct: 731 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790
Query: 788 INISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850
Query: 848 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 851 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910
Query: 908 VWIESQKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQK 967
+E Q L +LK F+ +R++ E + ++ V D+ S +N + E ++
Sbjct: 911 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970
Query: 968 LEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQ 1027
+ DR ++ I TGD+ LP NL R++WNAQK F ++ R S +HP+++VE V +L
Sbjct: 971 MREDR-EVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030
Query: 1028 ERLRVVPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFL 1087
++L +V GDD LS++AQ+NATL FNI LRSTL S+R+ +EFRL+ EAFDW++GEIES+F
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090
Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1147
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150
Query: 1148 SLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYY 1207
SL+VFL + ++ ERAK++ C LE+T LR VT T ++YDP+P ST++ ED ++V YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210
Query: 1208 EMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKL 1267
EMPD +V+ +ISPWLLR+EL+R+ M D+KL+M IAEKIN F DD+ CIF DDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270
Query: 1268 ILRIRIVNDEGQKGDMED---DSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVN 1327
+LRIRI+N + K E+ D +DDVFL+ + +MLT+M L+GI I+KV++ + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330
Query: 1328 K-----FDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVR 1387
E+ FKA EW+L+T+GV+L+ V+ ++VD RTTSN ++E+ VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390
Query: 1388 KALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEET 1447
KAL EL VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGPLM+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450
Query: 1448 VDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEV--QLPSYA- 1507
VD+L++AA + ESD ++GV+ENIMLGQLAP GTG L L+ E ++ +E+ +P
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGA 1510
Query: 1508 ---EGLEFGMTPARSPISG-----TPYHDGMMSPNYLLSPNVRH--SPFADASFSPYVG- 1567
G+ FG P SP+ G TP++ G SP+V +P A A FSP
Sbjct: 1511 AGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGA-AGFSPSAAS 1570
Query: 1568 -AMGFSPAASPAYH----SPQSPG----YSPT-----SPGYSPTSPGYSPTSP-GYSPTS 1627
A GFSP SPA+ SP SPG Y P+ SP YSPTSP Y P SP GY+P S
Sbjct: 1571 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQS 1630
Query: 1628 PTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1687
P+YSP SPSYSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YS
Sbjct: 1631 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 1688 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1747
PTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP
Sbjct: 1691 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1750
Query: 1748 GYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISPSSP-YSPTSPNYSPTS 1807
YSPTSPSYSPTSP+YSPTSP+Y P+ SPS YSP+SP SP+SP Y+PTSPNYSPTS
Sbjct: 1751 SYSPTSPSYSPTSPNYSPTSPNYTPT---SPS--YSPTSPSYSPTSPNYTPTSPNYSPTS 1810
Query: 1808 PSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS-- 1817
PSYSPTSPSYSP+SPSYSPSSP + SP Y+PSSP YSPS+ YSP++P Y+P+S S
Sbjct: 1811 PSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYS 1855
BLAST of Spo24266.1 vs. ExPASy Swiss-Prot
Match:
RPB1_HUMAN (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A PE=1 SV=2)
HSP 1 Score: 2041.5 bits (5288), Expect = 0.000e+0
Identity = 1103/1868 (59.05%), Postives = 1396/1868 (74.73%), Query Frame = 1
Query: 8 SPAEVSKVHLIQFGILSPDEIRQMSVVQ--VEFSETTERGKPKPGGLSDMRLGTIDRKLK 67
S + + +QFG+LSPDE+++MSV + +++ ETTE G+PK GGL D R G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 68 CDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHKFKQAL 127
C TC NM ECPGHFGH+ELAKP+FH+GFL + ++RCVCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 128 KIRN--PKNRLKKILEACKNKRKCEGGDSID-----VQDQDDEEPAK-KSRGGCGAQQPT 187
PK RL + + CK K CEGG+ +D Q + DE+ K K GGCG QP
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 188 FTIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPR 247
G+++ AE+K + + E++ L LS E+V + KR+SDE+C ++G PR
Sbjct: 191 IRRSGLELYAEWKHVNEDSQEKKIL---------LSPERVHEIFKRISDEECFVLGMEPR 250
Query: 248 YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAH 307
YARP+WMI+ VLP+PP VRP+V+M S+R++DDLTH+LA I++ N+ LRR E+NGA AH
Sbjct: 251 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310
Query: 308 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDF 367
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 311 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370
Query: 368 SARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKY 427
SARTVITPDPN++ID++GVP SIA N+T+ E VTP+N++RL+ELV G PG AKY
Sbjct: 371 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 430
Query: 428 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490
Query: 488 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIV 547
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+N+PVMGIV
Sbjct: 491 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550
Query: 548 QDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPK 607
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRP+WTGKQ+F+LIIP
Sbjct: 551 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610
Query: 608 QINLVRFSAWHQETETG----FLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWE 667
IN +R + H + E ++PGDT+V++E GEL+ G LCKK+LG+S+GSL+H+ +
Sbjct: 611 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670
Query: 668 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIR 727
E+G D R F + Q ++N WLL +IGIGD+IAD+ T + I TI +AK +V +I
Sbjct: 671 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730
Query: 728 AAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSF 787
A +LEP PG T+ ++FEN+VN++LN ARD GSSAQ+SL E NN K+MV +G+KGS
Sbjct: 731 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790
Query: 788 INISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850
Query: 848 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 851 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910
Query: 908 VWIESQKLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQK 967
+E Q L +LK F+ +R++ E + ++ V D+ S +N + E ++
Sbjct: 911 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970
Query: 968 LEVDRCQLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQ 1027
+ DR ++ I TGD+ LP NL R++WNAQK F ++ R S +HP+++VE V +L
Sbjct: 971 MREDR-EVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030
Query: 1028 ERLRVVPGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFL 1087
++L +V GDD LS++AQ+NATL FNI LRSTL S+R+ +EFRL+ EAFDW++GEIES+F
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090
Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1147
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150
Query: 1148 SLSVFLNPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYY 1207
SL+VFL + ++ ERAK++ C LE+T LR VT T ++YDP+P ST++ ED ++V YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210
Query: 1208 EMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKL 1267
EMPD +V+ +ISPWLLR+EL+R+ M D+KL+M IAEKIN F DD+ CIF DDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270
Query: 1268 ILRIRIVNDEGQKGDMED---DSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVN 1327
+LRIRI+N + K E+ D +DDVFL+ + +MLT+M L+GI I+KV++ + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330
Query: 1328 K-----FDEEKGFKAETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVR 1387
E+ FKA EW+L+T+GV+L+ V+ ++VD RTTSN ++E+ VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390
Query: 1388 KALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEET 1447
KAL EL VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGPLM+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450
Query: 1448 VDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEV--QLPSYA- 1507
VD+L++AA + ESD ++GV+ENIMLGQLAP GTG L L+ E ++ +E+ +P
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGA 1510
Query: 1508 ---EGLEFGMTPARSPISG-----TPYHDGMMSPNYLLSPNVRH--SPFADASFSPYVG- 1567
G+ FG P SP+ G TP++ G SP+V +P A A FSP
Sbjct: 1511 AGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGA-AGFSPSAAS 1570
Query: 1568 -AMGFSPAASPAYH----SPQSPG----YSPT-----SPGYSPTSPGYSPTSP-GYSPTS 1627
A GFSP SPA+ SP SPG Y P+ SP YSPTSP Y P SP GY+P S
Sbjct: 1571 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQS 1630
Query: 1628 PTYSPGSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1687
P+YSP SPSYSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YS
Sbjct: 1631 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1690
Query: 1688 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1747
PTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP
Sbjct: 1691 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1750
Query: 1748 GYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISPSSP-YSPTSPNYSPTS 1807
YSPTSPSYSPTSP+YSPTSP+Y P+ SPS YSP+SP SP+SP Y+PTSPNYSPTS
Sbjct: 1751 SYSPTSPSYSPTSPNYSPTSPNYTPT---SPS--YSPTSPSYSPTSPNYTPTSPNYSPTS 1810
Query: 1808 PSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS-- 1817
PSYSPTSPSYSP+SPSYSPSSP + SP Y+PSSP YSPS+ YSP++P Y+P+S S
Sbjct: 1811 PSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYS 1855
BLAST of Spo24266.1 vs. ExPASy Swiss-Prot
Match:
RPB1_SCHPO (DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1)
HSP 1 Score: 2003.0 bits (5188), Expect = 0.000e+0
Identity = 1062/1796 (59.13%), Postives = 1345/1796 (74.89%), Query Frame = 1
Query: 7 YSPAEVS--KVHLIQFGILSPDEIRQMSVVQVEFSETTERG--KPKPGGLSDMRLGTIDR 66
+SP+ V +V +QFGILSP+EIR MSV ++EF ET + +P+ GGL D RLGTIDR
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 67 KLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHKFK 126
+ KC TC MA+CPGHFGH+ELAKP+FHIGFL + I+ CVC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 127 QALKIRNPKNRLKKILEACKNKRKCEGGDSIDVQDQDDEEP-AKKSRGGCGAQQPTFTIE 186
+ R+PKNRL + CK K C+ G S + D P A GGCGA QPT +
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 187 GMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYARP 246
G+++ +K K ++D LPE K+ LS +V ++ +S ED +G N +YARP
Sbjct: 186 GLRLWGSWKRGKDESD----LPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 245
Query: 247 DWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISE 306
DWMI+ VLP+PPP VRPS+ +D +SR EDDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 246 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 305
Query: 307 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSART 366
+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI RLK KEGR+RGNLMGKRVDFSART
Sbjct: 306 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 365
Query: 367 VITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIRD 426
VIT DPN+++DELGVP SIA LTYPETVTPYN+ +L+ELV GP PG AKYIIRD
Sbjct: 366 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIRD 425
Query: 427 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 486
G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 426 TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 485
Query: 487 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQDTL 546
RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQ+NKPVMGIVQDTL
Sbjct: 486 RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 545
Query: 547 LGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQINL 606
G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ +WTGKQ+ +LIIPK INL
Sbjct: 546 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 605
Query: 607 VRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAAR 666
+R + + P D+ +LIE GE++ G + KKT+G+S G L+H IW+E GP+ +
Sbjct: 606 IR-----DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICK 665
Query: 667 KFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQLE 726
F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ +V I+ AQ +L+
Sbjct: 666 GFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLK 725
Query: 727 PEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMTA 786
PEPG T+ ESFE +V+++LN+ARD+AG SA+ SL ++NN+K MV AGSKGSFINISQM+A
Sbjct: 726 PEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSA 785
Query: 787 CVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 846
CVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GREG
Sbjct: 786 CVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREG 845
Query: 847 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKL 906
LIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+DA +E Q
Sbjct: 846 LIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVF 905
Query: 907 DSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRCQL 966
DSL++ +F+ YR ++ E+ ++ +++ S+++ + D E +L DR L
Sbjct: 906 DSLRLSTKQFEKKYRIDL-MEDRSLSLYMENSIENDSSVQD---LLDEEYTQLVADRELL 965
Query: 967 ATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVVPG 1026
I GD WPLPVN++R++ NA + F ++ ++ + + P +I+ +++L +L + G
Sbjct: 966 CKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRG 1025
Query: 1027 DDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAPGE 1086
D ++++ Q NATL F ILLRS + KRV+ E+RLN+ AF+W++GE+E+RF Q++V+PGE
Sbjct: 1026 SDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGE 1085
Query: 1087 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLNP 1146
M+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L P
Sbjct: 1086 MVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMP 1145
Query: 1147 EISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEEVS 1206
I+ + AKNVQ +E+T L +VT ATE+ YDPDP T+I ED DFV++++ +PDEEV
Sbjct: 1146 WIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVE 1205
Query: 1207 PD--KISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRI 1266
+ K SPWLLR+EL+R M+DKKLSM+D+A KI F D+ I+++DNA+KLI+R RI
Sbjct: 1206 ENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRI 1265
Query: 1267 VNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFK 1326
+ D+ +K + +D+ E+DVFLK + G ML ++L+G+P+I +V++ + K+ + E+ F+
Sbjct: 1266 IRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFE 1325
Query: 1327 AETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFD 1386
EW+L+T+G+NL M E VD+TRT SN +E++++LGIEA R ALL ELR VI FD
Sbjct: 1326 RADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFD 1385
Query: 1387 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1446
GSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG LMRCSFEETV+IL+DAA E D
Sbjct: 1386 GSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKD 1445
Query: 1447 YLRGVTENIMLGQLAPIGTGGCSLYLNEEML-QHAIEVQLPSYAEGLEFGMTPARSPI-S 1506
+G++ENIMLGQLAP+GTG +YL+++ML +++ +P+ A GM ++ P +
Sbjct: 1446 DCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGS---GMGTSQLPEGA 1505
Query: 1507 GTPY-HDGMMSPNYLLSPNVRHSPFADASFSPYV----------GAMGFSPAASPAYHSP 1566
GTPY M+ ++ SP+ A+FSP V G G AASP Y
Sbjct: 1506 GTPYERSPMVDSGFVGSPDA-------AAFSPLVQGGSEGREGFGDYGLLGAASP-YKGV 1565
Query: 1567 QSPGY-----SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPAYSPTSPSYS 1626
QSPGY S SPGY TSP YSP+SPGYS TSP Y P SPSYSPTSP+YSPTSPSYS
Sbjct: 1566 QSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYS 1625
Query: 1627 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1686
PTSPSYSPTSPSYS TSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP
Sbjct: 1626 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1685
Query: 1687 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP 1746
SYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSPTSPSYSPTSPSYSPTSPSY+P
Sbjct: 1686 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1745
Query: 1747 SAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSP 1778
+ SPS YSPTSP+YSPTSPSYSPTSPSYSP+SPSYSP+SP
Sbjct: 1746 T----------------SPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
BLAST of Spo24266.1 vs. TAIR (Arabidopsis)
Match:
AT4G35800.1 (RNA polymerase II large subunit)
HSP 1 Score: 3147.8 bits (8160), Expect = 0.000e+0
Identity = 1586/1834 (86.48%), Postives = 1709/1834 (93.18%), Query Frame = 1
Query: 1 MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI 60
MDTRFP+SPAEVSKV ++QFGILSPDEIRQMSV+ VE SETTE+GKPK GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60
Query: 61 DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHK 120
DRK+KC+TC ANMAECPGHFG+LELAKPM+H+GF+KTVLSIMRCVCFNCSKILADE++HK
Sbjct: 61 DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 121 FKQALKIRNPKNRLKKILEACKNKRKCEGGDSID-VQDQDDEEPAKKSRGGCGAQQPTFT 180
FKQA+KI+NPKNRLKKIL+ACKNK KC+GGD ID VQ +EP KKSRGGCGAQQP T
Sbjct: 121 FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180
Query: 181 IEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYA 240
IEGMK+IAEYK+ +KKNDE +QLPEPAERKQ L A++VLSVLKR+SD DCQL+GFNP++A
Sbjct: 181 IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240
Query: 241 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHII 300
RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHN+NL+RQE+NGAPAHII
Sbjct: 241 RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300
Query: 301 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSA 360
SEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301 SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
Query: 361 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYII 420
RTVITPDP INIDELGVPWSIALNLTYPETVTPYN+ERLKELVDYGPHPPPGKTGAKYII
Sbjct: 361 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420
Query: 421 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421 RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480
Query: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPVMGIVQD 540
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN+PVMGIVQD
Sbjct: 481 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
Query: 541 TLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQI 600
TLLGCRK+TKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQI
Sbjct: 541 TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600
Query: 601 NLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDA 660
NL+R+SAWH +TETGF+TPGDT+V IERGELL+GTLCKKTLG+S+GSL+HVIWEEVGPDA
Sbjct: 601 NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660
Query: 661 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAAQEKQ 720
ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD+STME IN TIS AK VK+LIR Q K+
Sbjct: 661 ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720
Query: 721 LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQM 780
L+PEPGRTM ++FENRVNQVLNKARDDAGSSAQ+SL ETNNLKAMVTAGSKGSFINISQM
Sbjct: 721 LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780
Query: 781 TACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
TACVGQQNVEGKRIPFGF GRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781 TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
Query: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
Query: 901 KLDSLKMKKSEFDATYRYEIDAENWEPDYMLKEHVDDLKSIREFRNVFDAEVQKLEVDRC 960
KLDSLKMKKSEFD T++YEID ENW P Y+ EH++DLK IRE R+VFDAE KLE DR
Sbjct: 901 KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960
Query: 961 QLATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMREKSGMHPMEIVEAVDKLQERLRVV 1020
QL T+IAT GD++WPLPVN+KR +WNAQKTFK+D+R+ S MHP+EIV+AVDKLQERL VV
Sbjct: 961 QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020
Query: 1021 PGDDFLSKEAQKNATLFFNILLRSTLSSKRVLKEFRLNREAFDWVIGEIESRFLQSLVAP 1080
PGDD LS EAQKNATLFFNILLRSTL+SKRVL+E++L+REAF+WVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080
Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1140
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
Query: 1141 NPEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIINEDVDFVKSYYEMPDEE 1200
PE SK+KE AK VQC LEYT LRSVT ATEVWYDPDPMSTII ED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200
Query: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINTEFSDDMTCIFTDDNAEKLILRIRI 1260
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN EF DD+TCIF DDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260
Query: 1261 VNDEGQKGDMEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFK 1320
+NDEG KG+++D+SAEDDVFLKK+ +MLTEMAL+GIPDINKVFIKQ + ++FDEE GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320
Query: 1321 AETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFD 1380
EWMLDTEGVNLLAVMCHE+VD RTTSNHLIE++EVLGIEAVR+ALLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380
Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1440
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA YAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440
Query: 1441 YLRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVQLPSYAEGLEFGMTPARSPISGT 1500
LRGVTENIMLGQLAPIGTG C LYLN+EML++AIE+QLPSY +GLEFGMTPARSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500
Query: 1501 PYHDGMMSPNYLLSPNVRHSPFADASFSPYVGAMGFSPAASPAYHSPQSPGYSPTSPGYS 1560
PYH+GMMSPNYLLSPN+R SP +DA FSPYVG M FSP++SP Y SP SPGYSPTSPGYS
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGY-SPSSPGYSPTSPGYS 1560
Query: 1561 PTSPGYSPTSPGYSPTSPTYSPGSPSYSPTSPA-------YSPTSPSYSPTSPSYSPTSP 1620
PTSPGYSPTSPGYSPTSPTYSP SP YSPTSPA YSPTSPSYSPTSPSYSPTSP
Sbjct: 1561 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
Query: 1621 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
SYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPTSPSYSP
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNP-SAKYSPSLAY 1740
TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNP SAKYSPS+AY
Sbjct: 1681 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAY 1740
Query: 1741 SPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYSSGPSPDYSPSSP 1800
SPS+ R+SP+SPYSPTSPNYSPTSPSYSPTSPSYSPSSP+YSPSSPYSSG SPD
Sbjct: 1741 SPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD------ 1800
Query: 1801 QYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKS 1826
YSPSAGYSP+ PGYSPSST QYTP DK DK+
Sbjct: 1801 -YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKT 1826
BLAST of Spo24266.1 vs. TAIR (Arabidopsis)
Match:
AT5G60040.2 (nuclear RNA polymerase C1)
HSP 1 Score: 540.0 bits (1390), Expect = 5.500e-153
Identity = 345/930 (37.10%), Postives = 495/930 (53.23%), Query Frame = 1
Query: 14 KVHLIQFGILSPDEIRQMSVVQV-EFSETTERGKPKPGGLSDMRLGTIDRKLKCDTCTAN 73
K+ I F +LS E+ + + VQV KP GL D R+G ++K C TC N
Sbjct: 22 KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81
Query: 74 MAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVC----------FNCSKILADE---DDH 133
CPGH+G+L+L P++++G+ +L I++C+C CS +L DE +DH
Sbjct: 82 FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDEKLYEDH 141
Query: 134 KFKQALKIRNPKNR-LKKILEACKNKRKCEGGDSIDVQDQDD----EEPAKK--SRGGCG 193
K+RNP+ LKK A +KC S + KK ++ G G
Sbjct: 142 ----LRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIG 201
Query: 194 AQQPTFTIEGMKIIAEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLM 253
I G +I E K + P L VL + KR+SD+DC+L+
Sbjct: 202 ISHDRSKIHGGEI-DECKSAISHTKQSTAAINPLT--YVLDPNLVLGLFKRMSDKDCELL 261
Query: 254 GFNPRYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRR--QE 313
RP+ +I+ + +PP +RPSVM+ +E+DLT +L II N +L + +
Sbjct: 262 YIA---YRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 321
Query: 314 RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNL 373
+P ++ + +Q +A Y ++E+ G Q P+ I RLK K GR R NL
Sbjct: 322 PTSSPKNM--QVWDTVQIEVARYINSEVRGCQN--QPEEHPLSGILQRLKGKGGRFRANL 381
Query: 374 MGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPP 433
GKRV+F+ RTVI+PDPN+ I E+G+P +A LT+PE V+ +N+E+L++ V GP+ P
Sbjct: 382 SGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYP 441
Query: 434 GKTGAKYIIRDDGQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 493
G +Y DG L Y K+ +D L +G V+RHL +GD VLFNRQPSLH+MSI
Sbjct: 442 GARNVRY---PDGSSRTLVGDYRKRIADE-LAIGCIVDRHLQEGDVVLFNRQPSLHRMSI 501
Query: 494 MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 553
M HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V + +P+
Sbjct: 502 MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 561
Query: 554 ANKPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPIWT 613
+ ++ QD L +T++DTF ++ F I + D + P PTILKP +WT
Sbjct: 562 NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWT 621
Query: 614 GKQVFNLIIPKQINLVRFSAWH------QETETGF---LTPGDTRVLIERGELLSGTLCK 673
GKQ+F++++ ++ + + ++ E GF + D V EL+SG L K
Sbjct: 622 GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 681
Query: 674 KTLG--------SSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 733
TL + L ++ + AA + L W+ + FSIGI D
Sbjct: 682 ATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQP 741
Query: 734 DASTMETINVTISQAKNEVKNLIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGS 793
+ +I ++ I L+ + G +S E + +LN R+ G
Sbjct: 742 GEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGK 801
Query: 794 SAQRSLDETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDD 853
+ L N+ M GSKGS INISQM ACVGQQ V G R P GF+ R+LPHF +
Sbjct: 802 ACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMS 861
Query: 854 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 900
P ++GFV NS+ GLT EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V
Sbjct: 862 KSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVH 921
BLAST of Spo24266.1 vs. TAIR (Arabidopsis)
Match:
AT3G57660.1 (nuclear RNA polymerase A1)
HSP 1 Score: 359.4 bits (921), Expect = 1.300e-98
Identity = 254/798 (31.83%), Postives = 389/798 (48.75%), Query Frame = 1
Query: 190 KMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRV---SDEDCQLMG--FNPRYARPDWM 249
K T++K+ E E K+ L +V ++LK + E C +G + + D+
Sbjct: 280 KETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYS 339
Query: 250 I--LQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEF 309
+ L+ + +PP RP S E T L +I N+ L N +
Sbjct: 340 MFFLESVLVPPTKFRPPTT-GGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFR 399
Query: 310 AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSARTV 369
+ LQ + FD++ AT +S R IC L+ KEG R +MGKRV+ + R+V
Sbjct: 400 WRNLQESVNVLFDSKT-----ATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSV 459
Query: 370 ITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTG-------A 429
I+PDP I ++++G+P AL LTYPE VTP+N+E+L+E + GP PG T
Sbjct: 460 ISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTM 519
Query: 430 KYIIRDDGQRLDLRYLKKSSDHHLELGYK---------VERHLNDGDFVLFNRQPSLHKM 489
K + +R R L S ELG V RH+ DGD VL NRQP+LHK
Sbjct: 520 KLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKP 579
Query: 490 SIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 549
S+M H+++++ T RL+ + S YNADFDGDEMN+H PQ +RAE ++
Sbjct: 580 SLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYA 639
Query: 550 SPQANKPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNIL-------MWWEDFDGKVPQ--- 609
P +P+ ++QD ++ +TKRDTF++KD F +L M F G+ +
Sbjct: 640 RPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVM 699
Query: 610 ------------PTILKPRPIWTGKQVFNLIIPK----------------QINLVRFSAW 669
P ILKP P+WTGKQV ++ + ++ + +
Sbjct: 700 VSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSR 759
Query: 670 HQETETGFLTP------------GDTRVLIERGELLSGTLCKKTLGSSSGSLIHVIWEEV 729
+ +G LT + ++ I + E + G + K L+H + E
Sbjct: 760 EVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYG--LVHTVHELY 819
Query: 730 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKNLIRAA 789
G +AA L L +L + F+ G+ D I E + + +N + ++R
Sbjct: 820 GSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKT 879
Query: 790 ----QEKQLEPEPGRTMME----------------SFENRVNQVLNKA-RDDAGSSAQRS 849
+ Q++P+ R+ +E S N +NQ +K +D S
Sbjct: 880 FGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLK 939
Query: 850 LDETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPES 893
N + M +G+KGS +N Q+++ +GQQ++EGKR+P G+TLP F D+ P +
Sbjct: 940 TPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRA 999
BLAST of Spo24266.1 vs. TAIR (Arabidopsis)
Match:
AT2G40030.1 (nuclear RNA polymerase D1B)
HSP 1 Score: 209.1 bits (531), Expect = 2.200e-53
Identity = 216/904 (23.89%), Postives = 389/904 (43.03%), Query Frame = 1
Query: 18 IQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTIDRKLKCDTCTANMAE-C 77
I F + S EI S+ +E P L++ LG KC++C A + C
Sbjct: 17 ITFALASHHEICIQSI--------SESAINHPSQLTNAFLGLPLEFGKCESCGATEPDKC 76
Query: 78 PGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHKFKQALKIRNPKNRLK- 137
GHFG+++L P++H + + ++ +C C KI K + L
Sbjct: 77 EGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIK------------KAKGTSGGLAD 136
Query: 138 KILEACKNKRKCEGGDSIDVQDQDDEEPA---------KKSRGGCGAQQPTFTIEGMKII 197
++L C CE I ++D+ + + + + GC + G +
Sbjct: 137 RLLGVC-----CEEASQISIKDRASDGASYLELKLPSRSRLQPGCWNFLERY---GYRYG 196
Query: 198 AEYKMTKKKNDEQEQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPRYARPDWMIL 257
++Y + L A +V +L+R+ +E + + + + IL
Sbjct: 197 SDYT-------------------RPLLAREVKEILRRIPEESRKKLTAKGHIPQEGY-IL 256
Query: 258 QVLPIPPPPVR-PSVMMDTSSRSEDDLTHQLAMIIRHNDNLR--RQERNGAPAHIISEFA 317
+ LP+PP + P S+ S D +L +++ ++ R +H +E +
Sbjct: 257 EYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHK-AEAS 316
Query: 318 QLLQFHIATYFDNELPGQPRATQRSGRPIK--------SICTRLKAKEGRIRGNLMGKRV 377
++ + + TY Q R T ++ R I S + KA ++R + K
Sbjct: 317 EMFRV-VDTYL------QVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGS 376
Query: 378 DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGA 437
FS+R+VIT D +++E+G+P IA +T+ E V+ +N L++LVD +
Sbjct: 377 GFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGST 436
Query: 438 KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 497
Y +RD S H EL G V R + DGD V NR P+ HK S+ R+
Sbjct: 437 TYSLRD------------GSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV 496
Query: 498 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANKPV 557
+ +T ++N + SP +ADFDGD +++ PQS +AEV+EL V K ++S + +
Sbjct: 497 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 556
Query: 558 MGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR---PIWTGKQV 617
+ + D+LL R + +R F++K + M+ +P P + K P WT Q+
Sbjct: 557 LQMGSDSLLSLRVMLER-VFLDKATAQQLAMYG---SLSLPPPALRKSSKSGPAWTVFQI 616
Query: 618 FNLIIPKQINLVRFSAWHQETETGFLTPGDTRVLIERGELLSGTLCKKTLGSSSGSLIHV 677
L P++++ GD R L++ +LL +GS ++
Sbjct: 617 LQLAFPERLS----------------CKGD-RFLVDGSDLLKFDFGVDAMGSIINEIVTS 676
Query: 678 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINVTISQAKNEVKN 737
I+ E GP F Q L+ L FS+ + D + M+ I+ I + + + +
Sbjct: 677 IFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVS 736
Query: 738 LIRAAQEKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLDETNNLKAMVTAGSK 797
+R + +L+ +E+ ++V +V A + ++ +++ ++ S
Sbjct: 737 RLRLSYRDELQ-------LENSIHKVKEV-----------AANFMLKSYSIRNLIDIKSN 796
Query: 798 GSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESR----GFVENSYLRGL 857
+ + Q T +G Q + K+ + + F K YG S G V+ + GL
Sbjct: 797 SAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHGL 813
Query: 858 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFL 890
P E H++ RE ++ ++ +E G + + L+ + DI++ DGTVRN+ + VIQF
Sbjct: 857 DPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFK 813
BLAST of Spo24266.1 vs. TAIR (Arabidopsis)
Match:
AT1G63020.1 (nuclear RNA polymerase D1A)
HSP 1 Score: 189.1 bits (479), Expect = 2.400e-47
Identity = 167/595 (28.07%), Postives = 263/595 (44.20%), Query Frame = 1
Query: 350 LMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPP 409
L+GKR D + RTV+ DP++ ++E+G+P SIA L E + N ERL + + P
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL--VTSFVPTLL 372
Query: 410 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 469
K ++ R D L + L+ G K+ R L DGD VL NR PS+H+ S++
Sbjct: 373 DNK--EMHVRRGD-------RLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSLI 432
Query: 470 GHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 529
++I+P S LN P+ DFDGD ++ +VPQS + + E+ EL+ + K +++ Q
Sbjct: 433 AMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQ 492
Query: 530 ANKPVMGIVQDTLLGCRKVTKRDTFIEKDVFMN-----ILMWWEDFDGKVPQPTILK--- 589
+ ++ + QD+L V +EK+ ++N L + F ++P P I+K
Sbjct: 493 NGRNLLSLGQDSLTAAYLVN-----VEKNCYLNRAQMQQLQMYCPF--QLPPPAIIKASP 552
Query: 590 --PRPIWTGKQVFNLIIPKQINLVRFSAWHQETETGF-LTPGDTRVLIERGELLSGTLCK 649
P WTG Q+F ++ P GF T V++ GELLS +
Sbjct: 553 SSTEPQWTGMQLFGMLFP----------------PGFDYTYPLNNVVVSNGELLSFSEGS 612
Query: 650 KTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETI 709
L G+ I + + + Q +++ WLL S+ + D +
Sbjct: 613 AWLRDGEGNFIERLLKH-DKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRK 672
Query: 710 NVT--ISQAKNEVKNLIRAAQ--------------EKQLEPEPGRTMMESFENRVNQVLN 769
N+T IS E + + Q E + E +E + + L+
Sbjct: 673 NLTEEISYGLREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLS 732
Query: 770 K--------ARDDAGSSAQRSLDETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 829
+ A D + A R D++N+ M AGSKG+ + Q + C+G QN +
Sbjct: 733 ELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSL 792
Query: 830 PFGFV-----------------GRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 889
FGF + T + Y P G +ENS+L GL P E F H++
Sbjct: 793 SFGFPRELTCAAWNDPNSPLRGAKGKDSTTTESYVP--YGVIENSFLTGLNPLESFVHSV 852
Query: 890 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 891
R+ + G + RRL+ M DI YDGTVRNS G+ ++QF Y DG
Sbjct: 853 TSRDS--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG 867
The following BLAST results are available for this feature:
