Spo19594 (gene) | SpinachBase

Overview


Name	Spo19594
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Translocon-associated protein subunit beta (TRAP-beta) (Signal sequence receptor subunit beta)
Location	SpoScf_01404 : 72127 .. 76312 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGACCAGGCCTAGGTCCATTTCACTACCTACCAAAAATGAAAGAAAACATGAAACAACTCTTCATCACTTTACCATCGACTCCAGCAAATGACAGAGCGACATGTCAGCATAGCCACGTATTTTTCTAGTAACATTCCCATTTCCCTCATAATTTTTTTCCTGCTTCTGCATTTTCGAAATTTCACTCCTCTCCCTAACTCCCTTGACAATTGTCGTCTCCAATCTCCATCCAAGGCTCATACAAAAAACAAAACGTTGGCAATCTGCAATTCCAGAGAATTCAAAAATGGCGATTTCGATCAATAAATTAGGGTTTACAATCGTAGCTTTGATGCTAACAATCGGTGCAGCAATGGCGGACTCAGAATCAGCGTTCATTGTAGCACACAAGAAGGCTACCCTCACTAAGCTCAAAAATGGCGTTGAACGTATCTCTGTTTCTATCGACATTTACAATCGCGGATCTCTGTATATTATCTTTATCTCTTTCCTACGTTTGCATTTGCAATTACGCTTTCGTTTGATTTTTTCATTGTTTTGAAGTTTGTCGATTGAAATCTTCTGTGCTTGATTTTTGTTGCATGTTGATTTGGAAGAAGCGTTGTTTTGGAATTAAATTTTGGTTTCAATTGCGTTGTTTAATCTCGAATTTTGCACTTGTTTAATTTTGTGAGTTTGCGATTTAAGAATTAGACTATGGTAATCGTGAAATTGAACTGATTTTACATGAATTAGTGATAATTTTTAAGCGTTTATTTATTGAAAAACTGGAATCAATTCCCTGGAAAAACATGTTGGACAAAAAAGTTCTGAAGACTGTATGTTCGAATACATGTCCTGTAGTTCTGATAATGTGATACCATTTGCATTGCTGTTAAACCTCTTGATCGAAACCAAAGTAATGAGTGTAAGTAAAGATCAAATATCACATTTCTGTTATACCTCATGATCGAAACAATAGTAATGAAACTAATCTTCTGCTCACTGGAGCTAATCTTCTGAATAAGTAATGGCCAAATATCACGTTTCTGTTATGTCTCGTGGTCGAAACAGTAGTAATGACCAGAAATCATATTTCCGCTAAACCCCATGAGTCCATGATGTAACTATTTCATAATTTGATACTTGGATTGGCTGTGTTTCACTCGTTTTTACTTACACTAGAGCCTAGGAAAAATCGATGCATTTGTCAGTTTGGTCATGTCTAACCAGATGATAACAATTCAATTTTGCAATGGAGTTCTTTTTCCGTCTTCCACTTTCCCTAAGTAGAAGTCTAATGTGTTTATATTCGATTTATGTTTTCAGAACTGTGTATGATGTAAGCCTTGTCGACAAGAACTGGCCAACAGATTCATTTGATGTGGTCAGTGGGAACTTTTCAAGATCATGGGATAGCCTTGATGCGTGAGTAACTGTGTATTAATTTATTAGCAATTTAGCATCCTATTGCTCTATGAGAGTTGCTAAGTCATGACTCTGCCCACTGATCATTGTTATTCACAGTGGAGCTATTGTTTCTCATGCTATTGAGCTGGAGCCAAAAGTAAAAGGTCTATTCCAGGGTTCCCCAGCTGTGATTACATTCCGCATTCCCAACAAGGCTGCACCTGTGGTAGGCACTTATTTACAATGTCGAATTTACTGCAATTTTCTTACATTGTTAACCTCTGCAGCTGATAAACTTTAATCCCTTACCAGGTTGCATATTCTACCCCCATCTCCCCTATGAACATGCTTGCAGATACTACACCACAGAACAAGCTTGATTTGGTAATATAATCTTAAAATTTTCAATTGTCCATGGTTATTATGTTTATGTTCTTTTGCCTTCCATATACAAAGTATGTTGTTATATACTAAGCTGACATTCTATGTTTTCACTTGTGAATTATTGTCTGGTGGTGGTGGGCTGGCGGCAACCAACTTTCTCAGGCAAAGGTTAGTTTTCATGCTTCAAATACTCTGTGCGACCTCTTCATAGGAACGCCTTTTGTCTGTATTTTTTTGATGAGCTTTAAGCACTAGTTTGCAAACCCCTACTTTTCTTGACTTCGTGTTTATAATGATATACCTCAGTGGATAAATAGTAAAACAAGTTACTCTTATCTAGATTTGTTGTTGCAGCAGTCATGTGAACAGATGATATTATATACGAAATACAACTGTACAAATTTTAGTGTCGAATAAGTTGAGTACTTTGTGCATGTGTTTGGAATAAGGCAAAGCTCTATACTAGCCTCTCTTATTCTTTCACTAGTTTATCTTTAGTCTTGGCCAGTGGCGATGCCAAGATTCCTTGACTAAGGGTTCAGAAATTTCAGACACATAATAAAATCAAACATCATTATCCAAAATTCAAATTAAAACTAATAATTGGTGGCGCACATGTACTATCCCAATAACTTTAAAAAATAATTACAGTTCAACTCGACGAAAGGGTGTTTTAGTTTAAAGCCTTCATCTTATACGGAGTATCAACCTATTCATAAGTTTTAATTGCCAAGCAACAAATAATTATAACTCTAACTAAAATCTAACATTGTATTTGTTCAAATGATTAGCAACATTAATTCAAATGAATAAATTTGCAAAAAGAAATTACAAATTTGAAAAACAAGAAAATTACTGCACAGATTTTATATGTTTTAGTGTTTAAAAGTATAGAAAATTTTTGAAAAAAAGAGAGGAAAGGGAAGAGGAATGGATAACTGGGAATCGGACCAATTACAAGTCAAGAAAACTATTGGAGAAACTTATACGTTTTAGTTATAAAGAAAAACCCCCAAATAAAAAGGGAAGAGAAAACACTTAGAAATGGGACTAGTGAGAATCGAACCTTTGGCATTTGCAATACACTTTCCAGTTACAACCACTCAAGCGTCTGAAAGACTTTGTGAATCATATCGCATTTGCGTTGTTTTGAACGTTTGTATTTCTGTTTTTAACTTGTCAGTTTTTTCCGCAACTAGTAAGGGTTCAGTTGAACCCACTAACCCTTACTAGCACTGCCACTGGTCTTGGTGGTAGTGATTAAAGAACAAGAATCCTAGTGTACTTGAATTTTCTAGTGCTACATATAGTCTTGCCCCAACACTTAAAGATCCTAACTGTGTGTTTTTATTTTGAACTGTGCTCTTTTTAGAGAATGCTGCACATCATATTCTAAAGTGTAGAATCTAATTTGTGGTTTCCTGCTATGAAAACTTCCTTAAGTTGATGAATCAAAGACATTGCAAAAAATGTTTGTCTTTTGGTGTTTGATAAGATTTGCAGTTGCATTTTTGTTGGATGAGTTAGTGATGTTATACTATTAATTTGTCCAAATTGTTTTCTTACACCACTCTTGTTTTTTCAGAGTCTTCTAGCTCGATTTGGTCCACAGTTTTCAGCAATCTCTCTTGTAGCTTTGTTTGGATACATACTTGCTAGTCCATCAAAGTCAAATGCACAAAAGAAGAGGCGATGAAGTTACGAAGTACAAGTTTAATGAGATAGCAAACAACTAACTGTTTTGGTTTGGTTTTGAGGATGGCTACTCCAAGCTGTTGACGAGTCTTTAAAGATACCAAACGCTAACCATTCTGGCTCTGCATCGGTTTCTTTTTACTCAAAATTGAAGGTTGCCTGCTGTTTCTGGTCCTTGTGTAGTCATGTACTTAAATAGAGTTAATGTTTCACTCGACTTTTTTACACAGATTCGCTAAAATCAAGAATTGCTTGGAGGTTTTCTTTTCTTGAAAGATGCCCCAAGTTAACTGAACTGCTCTTGTGTTTAACCCTCTTTTCCAAATGTTGATAGTGGTTTCTTTTGCATGACAAGCTCGAGTCGTTGTGTAGGCGGATTGGGAATAAGGGGATTAAAGGACTGAGTTGGGGAGAGGAATTGGTAGATTAGCTTTCGTTATTATAGTAGATTTATACCCTCCTATCATTTGTTTCATGTGATATTGTGATCCGAAAAAGTTGAAAAATTGATTGCCCTAAATAGGGGTCATTTGACCTCATGTTGGAAGTCCCAGAGAAGGCCCAACGAAGAAGTGACCTAATTCAAATTGCAAGAAATAAGACAGCCTTACATGTGAGGGGAGTGTTGAGAAGACAAATCAACGTGTAAGCAGTAGCGTATTTAGGATTTTGAAATAGGGTGAGCATCTTTGAACAATCAATAGAAAGTACAGAG

mRNA sequence

CGGGACCAGGCCTAGGTCCATTTCACTACCTACCAAAAATGAAAGAAAACATGAAACAACTCTTCATCACTTTACCATCGACTCCAGCAAATGACAGAGCGACATGTCAGCATAGCCACGTATTTTTCTAGTAACATTCCCATTTCCCTCATAATTTTTTTCCTGCTTCTGCATTTTCGAAATTTCACTCCTCTCCCTAACTCCCTTGACAATTGTCGTCTCCAATCTCCATCCAAGGCTCATACAAAAAACAAAACGTTGGCAATCTGCAATTCCAGAGAATTCAAAAATGGCGATTTCGATCAATAAATTAGGGTTTACAATCGTAGCTTTGATGCTAACAATCGGTGCAGCAATGGCGGACTCAGAATCAGCGTTCATTGTAGCACACAAGAAGGCTACCCTCACTAAGCTCAAAAATGGCGTTGAACGTATCTCTGTTTCTATCGACATTTACAATCGCGGATCTCTAACTGTGTATGATGTAAGCCTTGTCGACAAGAACTGGCCAACAGATTCATTTGATGTGGTCAGTGGGAACTTTTCAAGATCATGGGATAGCCTTGATGCTGGAGCTATTGTTTCTCATGCTATTGAGCTGGAGCCAAAAGTAAAAGGTCTATTCCAGGGTTCCCCAGCTGTGATTACATTCCGCATTCCCAACAAGGCTGCACCTGTGGTTGCATATTCTACCCCCATCTCCCCTATGAACATGCTTGCAGATACTACACCACAGAACAAGCTTGATTTGGCAAAGAGTCTTCTAGCTCGATTTGGTCCACAGTTTTCAGCAATCTCTCTTGTAGCTTTGTTTGGATACATACTTGCTAGTCCATCAAAGTCAAATGCACAAAAGAAGAGGCGATGAAGTTACGAAGTACAAGTTTAATGAGATAGCAAACAACTAACTGTTTTGGTTTGGTTTTGAGGATGGCTACTCCAAGCTGTTGACGAGTCTTTAAAGATACCAAACGCTAACCATTCTGGCTCTGCATCGGTTTCTTTTTACTCAAAATTGAAGGTTGCCTGCTGTTTCTGGTCCTTGTGTAGTCATGTACTTAAATAGAGTTAATGTTTCACTCGACTTTTTTACACAGATTCGCTAAAATCAAGAATTGCTTGGAGGTTTTCTTTTCTTGAAAGATGCCCCAAGTTAACTGAACTGCTCTTGTGTTTAACCCTCTTTTCCAAATGTTGATAGTGGTTTCTTTTGCATGACAAGCTCGAGTCGTTGTGTAGGCGGATTGGGAATAAGGGGATTAAAGGACTGAGTTGGGGAGAGGAATTGGTAGATTAGCTTTCGTTATTATAGTAGATTTATACCCTCCTATCATTTGTTTCATGTGATATTGTGATCCGAAAAAGTTGAAAAATTGATTGCCCTAAATAGGGGTCATTTGACCTCATGTTGGAAGTCCCAGAGAAGGCCCAACGAAGAAGTGACCTAATTCAAATTGCAAGAAATAAGACAGCCTTACATGTGAGGGGAGTGTTGAGAAGACAAATCAACGTGTAAGCAGTAGCGTATTTAGGATTTTGAAATAGGGTGAGCATCTTTGAACAATCAATAGAAAGTACAGAG

Coding sequence (CDS)

ATGGCGATTTCGATCAATAAATTAGGGTTTACAATCGTAGCTTTGATGCTAACAATCGGTGCAGCAATGGCGGACTCAGAATCAGCGTTCATTGTAGCACACAAGAAGGCTACCCTCACTAAGCTCAAAAATGGCGTTGAACGTATCTCTGTTTCTATCGACATTTACAATCGCGGATCTCTAACTGTGTATGATGTAAGCCTTGTCGACAAGAACTGGCCAACAGATTCATTTGATGTGGTCAGTGGGAACTTTTCAAGATCATGGGATAGCCTTGATGCTGGAGCTATTGTTTCTCATGCTATTGAGCTGGAGCCAAAAGTAAAAGGTCTATTCCAGGGTTCCCCAGCTGTGATTACATTCCGCATTCCCAACAAGGCTGCACCTGTGGTTGCATATTCTACCCCCATCTCCCCTATGAACATGCTTGCAGATACTACACCACAGAACAAGCTTGATTTGGCAAAGAGTCTTCTAGCTCGATTTGGTCCACAGTTTTCAGCAATCTCTCTTGTAGCTTTGTTTGGATACATACTTGCTAGTCCATCAAAGTCAAATGCACAAAAGAAGAGGCGATGA

Protein sequence

MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILASPSKSNAQKKRR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19594.1	Spo19594.1	mRNA

Homology

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BLAST of Spo19594.1 vs. NCBI nr
Match: gi|902236012|gb|KNA24175.1| (hypothetical protein SOVF_018150 [Spinacia oleracea])

HSP 1 Score: 365.5 bits (937), Expect = 5.500e-98
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS
Sbjct: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
           LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT
Sbjct: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA
Sbjct: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180

Query: 181 SPSKSNAQKKRR 193
           SPSKSNAQKKRR
Sbjct: 181 SPSKSNAQKKRR 192

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BLAST of Spo19594.1 vs. NCBI nr
Match: gi|743930924|ref|XP_011009724.1| (PREDICTED: translocon-associated protein subunit beta [Populus euphratica])

HSP 1 Score: 222.6 bits (566), Expect = 5.800e-55
Identity = 115/189 (60.85%), Postives = 144/189 (76.19%), Query Frame = 1

		  
Query: 7   KLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDV 66
           K+ F+++  +L + +++A S+  FIVAHKKATL  LK+G ER+SVSIDIYN+GS T YD+
Sbjct: 8   KILFSLLLCLLLVSSSLASSDVPFIVAHKKATLRSLKSGAERVSVSIDIYNQGSSTAYDI 67

Query: 67  SLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNK 126
           +L D NWP D FDVVSGN S+SWD LDAG ++SHA ELE KVKG+F GSPAVITFRIP K
Sbjct: 68  TLTDDNWPKDIFDVVSGNTSKSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTK 127

Query: 127 AAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILASPSKS- 186
           AA   AYSTPI P+++LA+  P  KL+LAK LLA++G   S IS+V LF Y+L +PSKS 
Sbjct: 128 AALQEAYSTPILPLDVLAEKPPVQKLELAKKLLAKYGSLISVISIVVLFIYLLVTPSKSG 187

Query: 187 --NAQKKRR 193
              A KKRR
Sbjct: 188 AAKASKKRR 196

[Close]

BLAST of Spo19594.1 vs. NCBI nr
Match: gi|566212273|ref|XP_006373119.1| (hypothetical protein POPTR_0017s08890g [Populus trichocarpa])

HSP 1 Score: 217.2 bits (552), Expect = 2.400e-53
Identity = 114/189 (60.32%), Postives = 143/189 (75.66%), Query Frame = 1

		  
Query: 7   KLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDV 66
           K+ F+I+  +L + +++A S+  FIVAHKKAT   LK+G ER+SVSIDIYN+GS T YD+
Sbjct: 8   KILFSILLSLLLVSSSLASSDVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDI 67

Query: 67  SLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNK 126
           +L D +WP D FDVVSGN S+SWD LDAG ++SHA ELE KVKG+F GSPAVITFRIP K
Sbjct: 68  TLTDDHWPKDIFDVVSGNTSQSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTK 127

Query: 127 AAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILASPSKS- 186
           AA   AYSTPI P+++LA+  P  KL+LAK LLA++G   S IS+V LF Y+L +PSKS 
Sbjct: 128 AALQEAYSTPILPLDVLAEKPPVQKLELAKKLLAKYGSLISVISIVVLFIYLLVTPSKSG 187

Query: 187 --NAQKKRR 193
              A KKRR
Sbjct: 188 AAKANKKRR 196

[Close]

BLAST of Spo19594.1 vs. NCBI nr
Match: gi|567909317|ref|XP_006446972.1| (hypothetical protein CICLE_v10016821mg [Citrus clementina])

HSP 1 Score: 216.1 bits (549), Expect = 5.400e-53
Identity = 109/194 (56.19%), Postives = 148/194 (76.29%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MA  I+K   +++  +  I ++ A S+  FIVAHKKA+L +LK+G ER+SVS+DIYN+G+
Sbjct: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERVSVSVDIYNQGT 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
            T YDVSL D +WP D FDV+SGN S+SW+ LDAG I+SH+ EL+ KVKG+F GSPA+IT
Sbjct: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIP KAA   AYSTP+ P+++LA+   +NKL+LAK LLA++G Q S IS++ LF Y++ 
Sbjct: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180

Query: 181 SPSKSNAQ--KKRR 193
           SPSKS A+  KK+R
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spo19594.1 vs. NCBI nr
Match: gi|641828217|gb|KDO47376.1| (hypothetical protein CISIN_1g029361mg [Citrus sinensis])

HSP 1 Score: 214.9 bits (546), Expect = 1.200e-52
Identity = 110/194 (56.70%), Postives = 148/194 (76.29%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MA  I+K   +++  +  I ++ A S+  FIVAHKKA+L +LK+G ERISVSIDI+N+G+
Sbjct: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
            T YDVSL D +WP D FDV+SGN S+SW+ LDAG I+SH+ EL+ KVKG+F GSPA+IT
Sbjct: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIP KAA   AYSTP+ P+++LA+   +NKL+LAK LLA++G Q S IS++ LF Y++ 
Sbjct: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180

Query: 181 SPSKSNAQ--KKRR 193
           SPSKS A+  KK+R
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXC0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018150 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 3.900e-98
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS
Sbjct: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
           LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT
Sbjct: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA
Sbjct: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180

Query: 181 SPSKSNAQKKRR 193
           SPSKSNAQKKRR
Sbjct: 181 SPSKSNAQKKRR 192

[Close]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Match: A9PCS0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08890g PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.700e-53
Identity = 114/189 (60.32%), Postives = 143/189 (75.66%), Query Frame = 1

		  
Query: 7   KLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDV 66
           K+ F+I+  +L + +++A S+  FIVAHKKAT   LK+G ER+SVSIDIYN+GS T YD+
Sbjct: 8   KILFSILLSLLLVSSSLASSDVPFIVAHKKATPRGLKSGAERVSVSIDIYNQGSSTAYDI 67

Query: 67  SLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNK 126
           +L D +WP D FDVVSGN S+SWD LDAG ++SHA ELE KVKG+F GSPAVITFRIP K
Sbjct: 68  TLTDDHWPKDIFDVVSGNTSQSWDRLDAGGLLSHAFELEGKVKGMFHGSPAVITFRIPTK 127

Query: 127 AAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILASPSKS- 186
           AA   AYSTPI P+++LA+  P  KL+LAK LLA++G   S IS+V LF Y+L +PSKS 
Sbjct: 128 AALQEAYSTPILPLDVLAEKPPVQKLELAKKLLAKYGSLISVISIVVLFIYLLVTPSKSG 187

Query: 187 --NAQKKRR 193
              A KKRR
Sbjct: 188 AAKANKKRR 196

[Close]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Match: V4U2X1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016821mg PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.800e-53
Identity = 109/194 (56.19%), Postives = 148/194 (76.29%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MA  I+K   +++  +  I ++ A S+  FIVAHKKA+L +LK+G ER+SVS+DIYN+G+
Sbjct: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERVSVSVDIYNQGT 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
            T YDVSL D +WP D FDV+SGN S+SW+ LDAG I+SH+ EL+ KVKG+F GSPA+IT
Sbjct: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIP KAA   AYSTP+ P+++LA+   +NKL+LAK LLA++G Q S IS++ LF Y++ 
Sbjct: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180

Query: 181 SPSKSNAQ--KKRR 193
           SPSKS A+  KK+R
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Match: A0A067E8Y7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029361mg PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.400e-53
Identity = 110/194 (56.70%), Postives = 148/194 (76.29%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MA  I+K   +++  +  I ++ A S+  FIVAHKKA+L +LK+G ERISVSIDI+N+G+
Sbjct: 1   MASPISKSLISVLIALFLISSSFASSDVPFIVAHKKASLKRLKSGAERISVSIDIHNQGT 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
            T YDVSL D +WP D FDV+SGN S+SW+ LDAG I+SH+ EL+ KVKG+F GSPA+IT
Sbjct: 61  STAYDVSLTDDSWPQDKFDVISGNISQSWERLDAGGILSHSFELDAKVKGMFHGSPALIT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIP KAA   AYSTP+ P+++LA+   +NKL+LAK LLA++G Q S IS++ LF Y++ 
Sbjct: 121 FRIPTKAALQEAYSTPMLPLDVLAEKPTENKLELAKRLLAKYGSQISVISIIVLFVYLIT 180

Query: 181 SPSKSNAQ--KKRR 193
           SPSKS A+  KK+R
Sbjct: 181 SPSKSAAKGSKKKR 194

[Close]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Match: B9GFG9_POPTR (Translocon-associated protein beta OS=Populus trichocarpa GN=POPTR_0001s33070g PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.200e-52
Identity = 111/186 (59.68%), Postives = 141/186 (75.81%), Query Frame = 1

		  
Query: 10  FTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVSLV 69
           FT+V  +L + +++A S+  FIVAHKKATL+ LK+G ER+SVSIDIYN+GS T YD++LV
Sbjct: 11  FTLVLSLLLVSSSIASSDVPFIVAHKKATLSSLKSGAERVSVSIDIYNQGSSTAYDITLV 70

Query: 70  DKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKAAP 129
           D +WP D F+VVSGN S+SW+ L AG ++SH+ EL+ KVKGLF GSPAVITFRIP KAA 
Sbjct: 71  DDHWPQDMFNVVSGNTSQSWERLHAGGLLSHSFELDGKVKGLFLGSPAVITFRIPTKAAL 130

Query: 130 VVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILASPSKSNAQ- 189
             AYSTPI P+++LAD  P  KL+ AK LL ++G   S IS+V LF Y+L +PSKS A  
Sbjct: 131 QEAYSTPILPLDVLADKPPVQKLEWAKKLLVKYGSLISVISIVVLFVYLLVTPSKSGAAK 190

Query: 190 --KKRR 193
             KKRR
Sbjct: 191 SGKKRR 196

[Close]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Match: SSRB_HUMAN (Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.900e-8
Identity = 39/128 (30.47%), Postives = 62/128 (48.44%), Query Frame = 1

		  
Query: 8   LGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVS 67
           L F ++AL      A+  +E    +   K+ L +       +++  +IYN GS    DV 
Sbjct: 4   LSFVVLALF-----AVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 63

Query: 68  LVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKA 127
           L D ++P + F +VSG  +  WD +   + VSH + L P   G F  + A IT+ +  + 
Sbjct: 64  LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY-LAQED 123

Query: 128 APVVAYST 136
            PVV  ST
Sbjct: 124 GPVVIGST 125

[Close]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Match: SSRB_BOVIN (Translocon-associated protein subunit beta OS=Bos taurus GN=SSR2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-7
Identity = 42/159 (26.42%), Postives = 70/159 (44.03%), Query Frame = 1

		  
Query: 8   LGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVS 67
           L F ++AL      A+  +E    +   K+ L +       +++  +IYN GS    DV 
Sbjct: 4   LAFAVLALF-----AVTQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVE 63

Query: 68  LVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKA 127
           L D ++P + F +VSG  +  WD +   + VSH + L P   G F  + A +T+      
Sbjct: 64  LSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDG 123

Query: 128 APVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQF 167
             V+ +++      +LA    Q + D       RF P F
Sbjct: 124 PVVIGFTSAPGQGGILA----QREFD------RRFSPHF 147

[Close]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Match: SSRB_MOUSE (Translocon-associated protein subunit beta OS=Mus musculus GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-7
Identity = 36/124 (29.03%), Postives = 63/124 (50.81%), Query Frame = 1

		  
Query: 12  IVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVSLVDK 71
           ++A+++    A++ +E    +   K+ L +       +++  +IYN GS    DV L D 
Sbjct: 3   LLAVVVLALLAVSQAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 62

Query: 72  NWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKAAPVV 131
           ++P + F +VSG  +  WD +   + VSH + L P   G F  + A IT+ +  +  PVV
Sbjct: 63  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITY-LAQEDGPVV 122

Query: 132 AYST 136
             ST
Sbjct: 123 IGST 125

[Close]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Match: SSRB_CANLF (Translocon-associated protein subunit beta OS=Canis lupus familiaris GN=SSR2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.000e-7
Identity = 41/155 (26.45%), Postives = 71/155 (45.81%), Query Frame = 1

		  
Query: 12  IVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDVSLVDK 71
           + +++L + A     E A ++A  K+ L +       +++  +IYN GS    DV L D 
Sbjct: 4   LASVLLALFAVSHAEEGARLLA-SKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 63

Query: 72  NWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPNKAAPVV 131
           ++P + F +VSG  +  WD +   + VSH + L P   G F  + A +T+        V+
Sbjct: 64  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVI 123

Query: 132 AYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQF 167
            +++      +LA    Q + D       RF P F
Sbjct: 124 GFTSAPGQGGILA----QREFD------RRFSPHF 147

[Close]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Match: SSRB_CAEEL (Translocon-associated protein subunit beta OS=Caenorhabditis elegans GN=trap-2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.500e-7
Identity = 35/131 (26.72%), Postives = 70/131 (53.44%), Query Frame = 1

		  
Query: 10  FTIVALMLTIGAAM---ADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGSLTVYDV 69
           F++ AL+  + + +     +  AFI+AHK+   T     ++ + +   +YN G      V
Sbjct: 3   FSLFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFV-LEYGLYNVGDKPAQKV 62

Query: 70  SLVDKN-WPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVITFRIPN 129
           ++ D++ +PT+SFD+V G     ++ + AG+ V+H++ + P+  G F  + A +T+   N
Sbjct: 63  TIDDRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDN 122

Query: 130 KAAPVVAYSTP 137
           +   V   +TP
Sbjct: 123 ENHHVTLTNTP 132

[Close]

BLAST of Spo19594.1 vs. TAIR (Arabidopsis)
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein)

HSP 1 Score: 202.2 bits (513), Expect = 2.900e-52
Identity = 103/195 (52.82%), Postives = 145/195 (74.36%), Query Frame = 1

		  
Query: 1   MAISINKLGFTIVALMLTIGAAMADSESAFIVAHKKATLTKLKNGVERISVSIDIYNRGS 60
           MA+++ KL  + +A+ + + A+ A SE  F+V HKKATL +LK+G ER+SVS DIYN+GS
Sbjct: 1   MAVAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGS 60

Query: 61  LTVYDVSLVDKNWPTDSFDVVSGNFSRSWDSLDAGAIVSHAIELEPKVKGLFQGSPAVIT 120
            + YDV+L D +W   +F+VV+GN S+SW+ LDAG I+SH+IELE KVKG+F G+PAV+T
Sbjct: 61  SSAYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVT 120

Query: 121 FRIPNKAAPVVAYSTPISPMNMLADTTPQNKLDLAKSLLARFGPQFSAISLVALFGYILA 180
           FRIP K A   AYSTP+ P+++LAD  P   LD+AK LLA++G   S IS+V  F Y++A
Sbjct: 121 FRIPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVA 180

Query: 181 SP----SKSNAQKKR 192
           +P    SK++++KKR
Sbjct: 181 TPKSNVSKASSKKKR 195

The following BLAST results are available for this feature:

BLAST of Spo19594.1 vs. NCBI nr
BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
BLAST of Spo19594.1 vs. TAIR (Arabidopsis)

BLAST of Spo19594.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902236012\|gb\|KNA24175.1\|	5.5e-98	100.	hypothetical protein SOVF_0181...	[more]
gi\|743930924\|ref\|XP_011009724.1\|	5.8e-55	60.8	PREDICTED: translocon-associat...	[more]
gi\|566212273\|ref\|XP_006373119.1\|	2.4e-53	60.3	hypothetical protein POPTR_001...	[more]
gi\|567909317\|ref\|XP_006446972.1\|	5.4e-53	56.1	hypothetical protein CICLE_v10...	[more]
gi\|641828217\|gb\|KDO47376.1\|	1.2e-52	56.7	hypothetical protein CISIN_1g0...	[more]

BLAST of Spo19594.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RXC0_SPIOL	3.9e-98	100.	Uncharacterized protein OS=Spi...	[more]
A9PCS0_POPTR	1.7e-53	60.3	Uncharacterized protein OS=Pop...	[more]
V4U2X1_9ROSI	3.8e-53	56.1	Uncharacterized protein OS=Cit...	[more]
A0A067E8Y7_CITSI	8.4e-53	56.7	Uncharacterized protein OS=Cit...	[more]
B9GFG9_POPTR	3.2e-52	59.6	Translocon-associated protein ...	[more]

BLAST of Spo19594.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
SSRB_HUMAN	6.9e-8	30.4	Translocon-associated protein ...	[more]
SSRB_BOVIN	1.2e-7	26.4	Translocon-associated protein ...	[more]
SSRB_MOUSE	1.5e-7	29.0	Translocon-associated protein ...	[more]
SSRB_CANLF	2.0e-7	26.4	Translocon-associated protein ...	[more]
SSRB_CAEEL	4.5e-7	26.7	Translocon-associated protein ...	[more]

BLAST of Spo19594.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT5G14030.1	2.9e-52	52.8	translocon-associated protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008856	Translocon-associated protein subunit beta	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 1..192 score: 2.0
None	No IPR available	PANTHER	PTHR12861:SF3	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA	coord: 1..192 score: 2.0
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 14..190 score: 1.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0016049	cell growth
biological_process	GO:0006810	transport
biological_process	GO:0032957	inositol trisphosphate metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0044238	primary metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0007165	signal transduction
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0000159	protein phosphatase type 2A complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005622	intracellular
molecular_function	GO:0051766	inositol trisphosphate kinase activity
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0047325	inositol tetrakisphosphate 1-kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0019888	protein phosphatase regulator activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016787	hydrolase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24878	0.74	Barchart \| Table
Spo10352	0.71	Barchart \| Table
Spo14378	0.70	Barchart \| Table
Spo04959	0.70	Barchart \| Table
Spo15984	0.69	Barchart \| Table
Spo19657	0.68	Barchart \| Table
Spo04094	0.67	Barchart \| Table
Spo15032	0.66	Barchart \| Table
Spo08033	0.66	Barchart \| Table
Spo22586	0.66	Barchart \| Table
Spo06391	0.66	Barchart \| Table