Spo06757 (gene) | SpinachBase

Overview


Name	Spo06757
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	ATP synthase subunit beta, chloroplastic (3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta)
Location	SpoScf_01459 : 78836 .. 81898 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGTTCTTGGGGAGCCTGTTGATAATTTAGGTCCAGTAGATACACGCACAACATCTCCTATTCATAGATCGGCGCCCGGGACGTACTGTGGACTATCTACGGAGGGACGACATTTGGAGTCCTAAAGACTTGTTCTTGTTCGGTTCGGGCGCAGCTAGGGAAGGCACGCTACAACATGTATGCATCCATTCTATGCTAAATGATTATGTGTAAATAATATGCTTTCCTGGCTTTATGGTTTTTCCGCATGATTTATGAATTGTCATATGTATCATAACCTAACAGGGTCTGCGTCACTAACCACGCAGGTCCTCAGTTTTCGAAAATGACAAGAAAATAAAAATCTTCAAAAACAAAAACAGGCTCGCCATCTTCAGCCGGCGGGATCTACGTCACAAACCGCGTAGGTCCTTATTTTCAAAACATCAAAACAGATTTGTCCACTTCTATCGGACGGGGTGTCCACCCTCAGCGGACAGGCTCGCCCACCTTCAGCGGGCGGGGTCTGCGTCACTAACAGCGCAGGTCCTTAGTCGCTGCAGCGATAACTTTTTCTGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTCCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATGGTTTCCCTTTTCCAAAAATCAAAGGATTGGTTTTCCGCTTTTCCAAAAAAGAGCGATGTGCTGGATTTTCCTTCGTTTTACGTCCTATAAAAACAAGGGGGTTTTCTCGTTTAGCTAACCCTGAAAATGAGAATCTTTAAAACGTTTTACCTCGTGATTGGGCTTGGCCAGGCCTAGTTACACTTTATAGCTTCGATTTCAAAAATATCTTTAGACACTTCCAATGACAAAGTGAGGGAGTTTCTATACTATCGGTTAACAAATTCCAATGACGCGTGAGGAATGTGTTAACACTTCAAGTGATGACCCTTAAGTCAAATGTTATCACTCGGGGGCTCGTGAGACCCTCGCAAAACAGGTCACATACACCATGGCTTGTATGACGCACTCCGTCTAGTACTTTGACCATCGTCTCATCTCGAGACTCAGTCAAAGTGGGGGCTAACTGTAGACACCTACTTTTGTCCCCATTCCCGAAAGGGAAGGTTCAATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACCGCCGTAAAAGGTAGTTGTTAAAAGTGGCAAAGTCATAAAAGATAGAAACCTGTCATAATTAGGTGTTTCACTCCAACATAAATCCTAAAAGAGATAGAACTGGCATTCCTGGTATAATTCGATAAAAGAGTTACGTATTAATTAAATTCCTAACGAATCTAGAGTTCGTAACGGGCCAGACGCATTCCGTCATAAGTTAATACGCACTAAAAGACTCAGATAAATCTCAAAAGCTCTGTGTTCTAAGAGTCCAAATCTGACAAAGAACTCGGCCCAGATCCCATTTTCAACGCCTGGATCTGGGCGCCGAAATCTTCGGCGCCCAGCCCTGGGCGCTGAAAATGCCTGGGGTCGTTTTATTTCCGGATTCTTTTTGGATTAGTATCTTAAAATCTATCTTTCCACACACTCTTTTCCTATAAATACATCCTAAAACCGACGTGAAAAGAACACACAATTCCATAACCTGAGTATTGACTCTAGCCTTAAGCCTAAGCCTCACGCTGCGAAATTGATCCGGCGTTCTGTCGCAATCGACCCAAAAGTCAAACAGAACGCATCCTGCCCCTTGTAGCTTGATGAATTAAGCCTAAATACTGGAACATTGCTTAGAAACCCGAGATTCGTTAAATAAAAGGAGAAATAGCAAAGTGGTTAGTTTTCTGAGAACCACAACGCACCTCTCAAGGGTGCGTTGTAATGTGTCCCTCGTATGATTTAATCGCTTTCATCACCCTTTTATAAAATTGTCAAACTATTAATTTGATTGATCTATCACGCCTAATAAGATAATACCTTGGACAATTGAATTATCATGCTAGGTACCTTAAATCAAATTAAATAAGATAATCACGATCGATTTAGTATTACGTGTTGCATATTGCTAAAATCAATTCAGAATAGTTTAATAATTTAACGCATGTCCCTTCAATTATTTATGCTGAGCTAGTAAGGATAACCTTCCTCTGGAGTATTATTGATGAGCACTCCTCTCGGTAGCTACAGTCCCCCGAACTCTCAATCTCTGCCCTGCGTGTGTACGTTGAGTGATCCCCACACCAGGGATCACAAGGGAACCTATGGTCGTCGTGGTCGAACATAATTGCACTCCCTTTATGTCACGATAACCGGGTTTTGTCAGTTTTCCTCATTGTCGTTAAAAACTGAATGGCGACTCCTATATTACTAGTCGATTGGGTGTCAACTCACAAGAAATCCAATTACACTTGATCTGACGACGTCACGCCCACGAGGGACGAGGTCATGCATTAGCCTCGTGCTTTTTCGACCCCCTCACAGAAGTATAGAATGATCAAGTGTTGTTGTTTTTGCAATAATTCTGCCGGAATTCTATTAAATAGAGAGAATTTGAGCGGTTTTTCGTCCGTTGTAGGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

mRNA sequence

ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

Coding sequence (CDS)

ATGAGAATCAATCCTACTACTTCTGATCCTGGGGTTTCCACACTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATTATTGGTCCGGTACTGGACGTAGCCTTTCCTCCAGGCAAGATGCCCAATATTTACAACGCTCTAATAGTTAAAGGTCGAGATACTGCTGGTCAACCAATGAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATAGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGCGAGGAATGGAAGTTATCGACACAGGAGCTCCTTTAAGCGTTCCAGTCGGTGGAGCGACTCTTGGACGAATTTTTAACGGAGTGAGTGGGAGGTTGAGGAGAGAGAAAATGGGAGAGAGTGGGAGTTATGGTAACTGA

Protein sequence

MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNGVSGRLRREKMGESGSYGN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06757.1	Spo06757.1	mRNA

Homology

[Close]

BLAST of Spo06757.1 vs. NCBI nr
Match: gi|11497535|ref|NP_054943.1| (ATP synthase CF1 beta subunit [Spinacia oleracea])

HSP 1 Score: 225.3 bits (573), Expect = 6.100e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. NCBI nr
Match: gi|15988217|pdb|1FX0|B (Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach)

HSP 1 Score: 221.5 bits (563), Expect = 8.800e-55
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVL+VAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGG TLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. NCBI nr
Match: gi|377580686|gb|AFB70481.1| (ATPase beta chain, partial (chloroplast) [Portulacaria afra])

HSP 1 Score: 220.7 bits (561), Expect = 1.500e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. NCBI nr
Match: gi|306485981|gb|ADM92639.1| (ATP synthase CF1 beta subunit [Davidia involucrata])

HSP 1 Score: 220.3 bits (560), Expect = 2.000e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. NCBI nr
Match: gi|836642810|ref|YP_009143814.1| (ATP synthase CF1 beta subunit (chloroplast) [Salicornia bigelovii])

HSP 1 Score: 219.5 bits (558), Expect = 3.300e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT+GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTSGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: H6T8A7_PORAR (ATP synthase subunit beta (Fragment) OS=Portulacaria afra GN=atpB PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.000e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: F4YK16_DAVIN (ATP synthase subunit beta (Fragment) OS=Davidia involucrata GN=atpB PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.400e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXY4_SALBI (ATP synthase subunit beta, chloroplastic OS=Salicornia bigelovii GN=atpB PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.300e-54
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT+GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTSGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: A9XUG9_CORFO (ATP synthase subunit beta, chloroplastic OS=Cornus florida GN=atpB PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.200e-54
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PG+STLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQP+N
Sbjct: 1   MRINPTTSGPGISTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSAT+GLTRGMEV+DTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATEGLTRGMEVVDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Match: M4GXP7_9ROSI (ATP synthase subunit beta OS=Francoa sonchifolia GN=atpB PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.800e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDTAGQ +N
Sbjct: 1   MRINPTTSSPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_SPIOL (ATP synthase subunit beta, chloroplastic OS=Spinacia oleracea GN=atpB PE=1 SV=2)

HSP 1 Score: 225.3 bits (573), Expect = 3.800e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN
Sbjct: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_MAGTR (ATP synthase subunit beta, chloroplastic OS=Magnolia tripetala GN=atpB PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.400e-55
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQP+N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQPIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_CARPA (ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.800e-55
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPT S PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTASGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_VITVI (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera GN=atpB PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-54
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Match: ATPB_CINCA (ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora GN=atpB PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-54
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MRINPTTS PGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGAPLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: ATCG00480.1 (ATP synthase subunit beta)

HSP 1 Score: 196.8 bits (499), Expect = 8.200e-51
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 1

		  
Query: 1   MRINPTTSDPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQPMN 60
           MR NPTTS+P VS  EKKNLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ +N
Sbjct: 1   MRTNPTTSNPEVSIREKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEIN 60

Query: 61  VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           VTCEVQQLLGNNRVRAVAMSAT+GL RGM+V+D G PLSVPVGGATLGRIFN
Sbjct: 61  VTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDMGNPLSVPVGGATLGRIFN 112

[Close]

BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08670.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1

		  
Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 69  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 128

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 129 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171

[Close]

BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08680.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1

		  
Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 72  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 131

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 132 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 174

[Close]

BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Match: AT5G08690.1 (ATP synthase alpha/beta family protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-16
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1

		  
Query: 9   DPGVSTLE---KKNLGRIAQIIGPVLDVAFPPGK-MPNIYNALIVKGRDTAGQPMNVTCE 68
           D G  T +   K  +GR+ Q+IG ++DV F   + +P I  +L V+       P  +  E
Sbjct: 69  DEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDH-----PTRLVLE 128

Query: 69  VQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFN 113
           V   LG N VR +AM  T+GL RG +V++TGAP++VPVG ATLGRI N
Sbjct: 129 VSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171

The following BLAST results are available for this feature:

BLAST of Spo06757.1 vs. NCBI nr
BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
BLAST of Spo06757.1 vs. TAIR (Arabidopsis)

BLAST of Spo06757.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|11497535\|ref\|NP_054943.1\|	6.1e-56	100.	ATP synthase CF1 beta subunit ...	[more]
gi\|15988217\|pdb\|1FX0\|B	8.8e-55	98.2	Chain B, Crystal Structure Of ...	[more]
gi\|377580686\|gb\|AFB70481.1\|	1.5e-54	97.3	ATPase beta chain, partial (ch...	[more]
gi\|306485981\|gb\|ADM92639.1\|	2.0e-54	96.4	ATP synthase CF1 beta subunit ...	[more]
gi\|836642810\|ref\|YP_009143814.1\|	3.3e-54	96.4	ATP synthase CF1 beta subunit ...	[more]

BLAST of Spo06757.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
H6T8A7_PORAR	1.0e-54	97.3	ATP synthase subunit beta (Fra...	[more]
F4YK16_DAVIN	1.4e-54	96.4	ATP synthase subunit beta (Fra...	[more]
A0A0G2QXY4_SALBI	2.3e-54	96.4	ATP synthase subunit beta, chl...	[more]
A9XUG9_CORFO	5.2e-54	94.6	ATP synthase subunit beta, chl...	[more]
M4GXP7_9ROSI	6.8e-54	96.4	ATP synthase subunit beta OS=F...	[more]

BLAST of Spo06757.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
ATPB_SPIOL	3.8e-58	100.	ATP synthase subunit beta, chl...	[more]
ATPB_MAGTR	1.4e-55	95.5	ATP synthase subunit beta, chl...	[more]
ATPB_CARPA	8.8e-55	94.6	ATP synthase subunit beta, chl...	[more]
ATPB_VITVI	1.1e-54	94.6	ATP synthase subunit beta, chl...	[more]
ATPB_CINCA	1.1e-54	94.6	ATP synthase subunit beta, chl...	[more]

BLAST of Spo06757.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
ATCG00480.1	8.2e-51	86.6	ATP synthase subunit beta	[more]
AT5G08670.1	5.0e-16	43.5	ATP synthase alpha/beta family...	[more]
AT5G08680.1	5.0e-16	43.5	ATP synthase alpha/beta family...	[more]
AT5G08690.1	5.0e-16	43.5	ATP synthase alpha/beta family...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 23..95 score: 9.3
IPR004100	ATPase, F1 complex alpha/beta subunit, N-terminal domain	unknown	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 19..97 score: 3.34
None	No IPR available	GENE3D	2.40.10.170		coord: 12..97 score: 9.1
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..112 score: 1.1
None	No IPR available	PANTHER	PTHR15184:SF43	ATP SYNTHASE SUBUNIT BETA, CHLOROPLASTIC	coord: 1..112 score: 1.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo22445	0.72	Barchart \| Table
Spo17010	0.71	Barchart \| Table
Spo24717	0.71	Barchart \| Table
Spo01748	0.70	Barchart \| Table
Spo18044	0.70	Barchart \| Table
Spo24708	0.70	Barchart \| Table
Spo10627	0.70	Barchart \| Table
Spo16485	0.70	Barchart \| Table
Spo06200	0.69	Barchart \| Table
Spo22572	0.68	Barchart \| Table
Spo04278	0.68	Barchart \| Table
Spo11904	0.68	Barchart \| Table
Spo13053	0.67	Barchart \| Table
Spo10318	0.67	Barchart \| Table
Spo16895	0.66	Barchart \| Table
Spo21419	0.66	Barchart \| Table
Spo24719	0.65	Barchart \| Table
Spo11190	0.65	Barchart \| Table
Spo16484	0.65	Barchart \| Table
Spo17618	0.65	Barchart \| Table
Spo01146	0.65	Barchart \| Table