Spo12443 (gene)

Overview
NameSpo12443
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01487 : 12426 .. 14046 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGGCCCTTTTTTACTGGTTCTTTGAAGCTCTTTCACAGCCCTTTGATAAACCTCTTGTACTCTGGCTCAATGGAGGTATGATTATTAACACGCACACTTAAGTTTGCAGGCTATTGTTGTTCTCTCTTTGGATTCAGTGCTGATGTGTCGGTTCTTTGTTTTGTAGTACCTGGTTGCTCATCAGTAGGATATGGTGCTCTTGTTGAATTAGGTCCACTTAAAGTTGATGAAAACGGTGATGGCTGACTATTCAATAACTTATCGTGGAATACAGGTAATTATCATCTCATATTCATTACCATGTCTTTCTTTCAACAACTCAGAAAGTCAGAATCATGTTAAACGTGTTAATATGCCATCTTAATATTCTACTGAAGAATGTTTGAATAGTTGCTCTACTTTCTTCTTCTCCTTTTCTAATATTTCTCAAGCATAAATGCCTTCTATCAAACTCCGGACAAGAGAAATTACTAAAATTATGCTATAGAATTAAATGTGCTGGGAACTTTTATTCCAATTGGAAAGAGCTAGAAAACGTTGAGTTAAATAGAGGCCTAGACATTAAGCCTAGAGATCGAAGCACGAGATGACAAAGTTTGGGGAATATTACTTGTTGGTCAAAGTATGCATTTTTTTCCATTTTTTATTTGTGATAATTAGTTTAAGTTACTTAATTTGTAAACTCTTCCAACAAACATAATGGGTGAAGAAAAGGACTTTTTGTTTACACTAAGGGGCAATGTTGGCCTCGTCCCATTATCCTATACGTAATATTGATCTTTCTTTAATTTGATCTCTACTATCAGACCCTTGCAATATTTTTTTCATCTTGACCCACATTTCCTAACTTCATTAATTTTTCCACATAGGTTTATGCAACGACTGCCAAAAATAGATGAAAGTTGTAAGATCATTTTAATGATTACAGAGTAACTTTTGTAATCTTAATTAAGCTCAGTTGCAACAGGAAGGCAGATTAATTTAATTCTAGTTGTCTATTTTCACTTCTTGTATCTTAGCCTGATTGTTGGTGTTCTGGCCATTTACTTGATGGTGATTTTTGTCCTACAAACATTATCTTGTACGTTTGACTTTTCTTTCTTAGTATATTCTTGTTTATGACTTCAAGTGCTTAAGTTTTCCTTTTCAAAATTGTTTATGGTTTATTTGTGCTGATTATTTTTAGTTTTGTGGTTATGCAGATATTACCCATGTCTATAGACTCACATCCAATAGGCCCTAAGCCTCAGAGAAATTATGTACTTGTGTGTATGATTCAGCCGAAAGGTTATGATTTCTGATTGAGTCAAGCTGGTTTTGGTAGTTATTGTTGGTTTTGCTTCAAAACATTTACTTGATGCTTCACTGTATTCCATTCTACTGTACAAGTATGACAGTCCTCATCCCTCAAACATGTCACGTACTAGTTAATTAGATGAGGATGACCCATACAACTCATGTTTTCTCGTTTATTTTCTATATCAGCAATATAATTGCATTCTTGATTTACAATGATTCTTGGTTGTTTGACTTGGATTAGGATATACGTTTACAACTCAGCTGTCCAGACACTTATTCTTATTATTTTTCACTTCTAGTGTAAAACCTTGGTGCA

mRNA sequence

ATGGCAGGGCCCTTTTTTACTGGTTCTTTGAAGCTCTTTCACAGCCCTTTGATAAACCTCTTGTACTCTGGCTCAATGGAGGTCCACTTAAAGTTGATGAAAACGGTGATGGCTGACTATTCAATAACTTATCGTGGAATACAGATATTACCCATGTCTATAGACTCACATCCAATAGGCCCTAAGCCTCAGAGAAATTATGTACTTGTGTGATATACGTTTACAACTCAGCTGTCCAGACACTTATTCTTATTATTTTTCACTTCTAGTGTAAAACCTTGGTGCA

Coding sequence (CDS)

ATGGCAGGGCCCTTTTTTACTGGTTCTTTGAAGCTCTTTCACAGCCCTTTGATAAACCTCTTGTACTCTGGCTCAATGGAGGTCCACTTAAAGTTGATGAAAACGGTGATGGCTGACTATTCAATAACTTATCGTGGAATACAGATATTACCCATGTCTATAGACTCACATCCAATAGGCCCTAAGCCTCAGAGAAATTATGTACTTGTGTGA

Protein sequence

MAGPFFTGSLKLFHSPLINLLYSGSMEVHLKLMKTVMADYSITYRGIQILPMSIDSHPIGPKPQRNYVLV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12443.1Spo12443.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12443.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12443.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12443.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12443.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0009113 purine nucleobase biosynthetic process
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression