Spo21172 (gene)

Overview
NameSpo21172
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01771 : 44929 .. 47940 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAACAATGGAGCTCTTTTATGGATTATTGACATTGTTGGTATTGAATTATTTTTTTGCTTTTGATGTTATAGATCGATTTGCATTGGTTTGGGTGTTGGTCTTACATTGGGAAGAGTTTGTGAATTGTTTCTTTAAATTGTAGAGAATAATTTCATAAACCGTACTTTGAAAACATACTTTATAATATGATATTGAACTATAAGCTTAAACATATTTCGTAATATGATAATGAACTGAAATATATATTCCGTATAATTGATTTGTTTGCCGAAAAATATTTATAGAATGTATATTATCAACAGAATCTTTAGGATTTGTAATCAAAATAAATAATACACTTCCTTAAATATTATAATTCCCTCAAAAAAAATTAATTAATTTTTTTAATTAAAAAGAGAGGCGAATCAATGAGTGACACTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATATTATATAGATATAGATTGGTTTCGGCCAATGAAAAATAAGATTTCTAATTTATTTTTTAATTAAAAAAATCAACAACCACGTAGATAATTAATTAGGCCGGTGCCACACAGATAGTATAATTAATTAATTACTAATATATACAACTCCATCCAAAATCAACCACTCTAAAAATTAAAAATTAAATCTAAAATAAAATTCATCCAAAACCAAACACTAATCTATAATAAAATTCAAACCAAAATCAAACACTAATCCAATATTATCCACGTAGGAAATCTAATGGTTTCGGCCAATGAAAAGTAAGATTTCAAAATTATTTTTTAATTAAATTAGTTACTAATATTACGCGTATACAATTTCATCCAAAATCAAACACTCTAATAATTAAAAAAAAATCTAAAATGATATGTAATCAAAAATCAAAAATCAAATCTAATATAATATACTACGTATAAAATATAGCAGTTAGTATATCTAGGAATTTTATTTTAACTTAACAATTAAATAAAATCTGTGTATCGCACGGGCTAAAATCTACTCCCTCCATTTCTTTTTGTTGTATCCGTTTCTATTTTAAGCGTTTCATATTGTTGTATCCATTTAGAATCTANCTCTAGCTAGGCATTCAGCTCACTTGATCTCACTGAATTATTAACTTGTCAATTAATACTGAACCGCATTTATTAGACTTAACATAGAATGCATACTTGGACCAAGGGCATTATTTCCTTCATCTCTCACCTCCTTTATCACCTATCATTATCACTCCTCTCTCTTACCTTATTTCTTTATTATTTTCTCACTCCTTTATTTATTATANAATCTATTCTATTTTTGGACATACATTTTATCCTAAAATACCCTTACATTTCTATCTAATTACCAAAATACCTAAAGATTCTACCCATATTTCCACCTAATTTTCCCCACCCATAATATTTAATTATTTTCCCTTCCCCATATACCCACTCTCTTGTTAGGTTATGATACATATGACAATTCATAAATCATGCGGAAAAACCATAAACCCAGGAATACATATTATTTACACATAATCATTTAGCATAGAATAGATGCATACTCTTTGTTGCGTGCCTTCCCTAGCTGCGCCCGAACCGAACAAGAACAAGTCTTTAGGACTCCAAGTGTCGTCCCTCCGTAGATAGTCCACAGCACGTCCGGATCCGCCTTAAGATTGACCAACTAGAATCGCCCTTAAGGTACTATTATTTTCGGCACTTTATAGGCAAATGTGTGACTAAATTTTCTCTCAAAAACTCACTTTGAATACTTTGAAACTTGTGTTATAAATTGTGAGCCCTAGNTCTTACACCCAATCATTTCTCTTACACCCAATCATTACACTTATACCCATACAAACCAATATTCTAATTTTCTTAAAACCACACCAGATTCCAAATGGATACATCAAAAAGAAATGGAGGGAGTAGTTACATAATAAAAATCAACGTGTTATTACATAATCAAATCCATTAAAAATCATCAAAACACGATTTACAAAATCAAATTCATTAAAATAGTCAAAATCATCAAAAACCCGATTATTACAAAATCAAAATCATTAAAAACAAATAATTTATAATTACAAAATTGAAAAATCACCTCCCAAAATCTGATTAGCAGCTGCAGAATTCAGATTTAAAGAAGAAGAACCAATTGAATTTAATGTTGAAGCAGAAAAATCAACGAACTTTTTTTTTATTACTTTCTCTCTCTAAAAACCATTTCAGAATACCTAGTTTGCACTTTCTTTCTCCTCTTCACAGTTTGAATTCAAAAACATAAAAAACAAAAAACATAAAAATCCAGAAAAATATATATATTCGAACGAAAAACAACAAATAAAATAAAAACGCGAAAAACAGAGTTGTAAAAAACAGAACCTTTATTGTTCTTTTGTTCAAGAAAATTGTTCTTTTTTCTCAGAATTTAATAATACACGTGCGTTTTGTATACTTTTTATGTCGTTTTGTTCCCTCTATACATAAATCTTTTGCGGTAAAAAATAATTTATCTTATTGTTAATGAGTACGGAGTATAAAATAAAAGGGTAAAAAGGAGATTTTATTTTCTTCCATTTTATATTTCAGACCGGAGAGAGAAAGAGAAACATAAACAGAGCGCGAAGCGAAGAAGAAGAAGAAAGAGGAGAGAGAAAGAGAATTCTCAGGCGAAAATAGGGTTTCCACTTTCAAACTCTTATCTACGAAACGTTTCTCGATCTGCGCATTCAAGGATAATTCTTCTGTTCGTTGCAATTTGATCTGTTAAAAAATCTGTAAGTTTAATTCATTTTTTTAATTGATAATCCCAGATTTGGGGATTTTAGGGTTTTGATTTTGTCAAGTTGATTATGTGATTTGGAGCTGATTCTTTGTGATTTGGTGTTGCCAAACGCTACATTGGGATTGTTTTTGTCTAATTTGTTTGACTTACCGTTTGTGTGTTTCTTGTTAATGTTTGAAATTAGGGTTTTTGGCGAAGGACGATTGGTGGAAAGGGAAGATATTGCAGTATGAGCATCAATAG

mRNA sequence

ATGTTGAACAATGGAGCTCTTTTATGGATTATTGACATTGTTGAGCGCGAAGCGAAGAAGAAGAAGAAAGAGGAGAGAGAAAGAGAATTCTCAGGCGAAAATAGGGTTTCCACTTTCAAACTCTTATCTACGAAACGTTTCTCGATCTGCGCATTCAAGGATAATTCTTCTGTTCGTTGCAATTTGATCTGGTTTTTGGCGAAGGACGATTGGTGGAAAGGGAAGATATTGCAGTATGAGCATCAATAG

Coding sequence (CDS)

ATGTTGAACAATGGAGCTCTTTTATGGATTATTGACATTGTTGAGCGCGAAGCGAAGAAGAAGAAGAAAGAGGAGAGAGAAAGAGAATTCTCAGGCGAAAATAGGGTTTCCACTTTCAAACTCTTATCTACGAAACGTTTCTCGATCTGCGCATTCAAGGATAATTCTTCTGTTCGTTGCAATTTGATCTGGTTTTTGGCGAAGGACGATTGGTGGAAAGGGAAGATATTGCAGTATGAGCATCAATAG

Protein sequence

MLNNGALLWIIDIVEREAKKKKKEEREREFSGENRVSTFKLLSTKRFSICAFKDNSSVRCNLIWFLAKDDWWKGKILQYEHQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21172.1Spo21172.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo21172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0050789 regulation of biological process
biological_process GO:0009816 defense response to bacterium, incompatible interaction
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009630 gravitropism
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008240 tripeptidyl-peptidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
molecular_function GO:0004630 phospholipase D activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0070290 N-acylphosphatidylethanolamine-specific phospholipase D activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression