Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAGACTCAAGCAGTTTCTCCTCAACAACCTCTAAAGGCATTGCTGCCATTGTTGGGGTAGGCCCAAAACTTGGAAAATCCATCGCCCGCAAGTTTGCTCATGAAGGCTACACAGTTGCCATCCTCTCAAGGGATTTAGGCAAGCCACCAATTTTCCTCCACTCATATTGTATTTATAATTTCCTTTCCTTTTCTTTTTATTTTTTATTCTCTTTTTACTCTTTCTGTTCATTTTTTTTCCCTTTTCATTCTTGAGTAAACGTATGATATTTCTGTGGTTTGGACACAGTGAGGCTAGGAAGGATTGCAGAAGAGATAGCAAGGGAAGAGAAAGCTCAAGTGTTTGCCATAAGAATTGACTGCTCAGATACCAGAAGTGTTACAGAAGCTTTTGAAGGGGTTCTCTCTCTCGGATTCGTCGAAGTGTTGATCTATAATGCTGCATACCAACCACTCTCTTTGCATCCAAAAAATTTCACTGACATTCCAGTCAATTCTTTTGAGAAATCGCTCGCTGTTTCATCTGTTGGTGCCTTTCATTGTGCTAAGCAGGTAATTTAAGCTTTCCTCCACCCTCTAACTCACTCCCTCTATCTGGATTTTAAAAGTGAATAACTAATGGAAACTTCTAATGGGCTTGGGTTAGGTTCTTCCAGGTATGATGGAGAGAGGGAAAGGGACAATACTCTTTACAGGCTGTTCAGCTTCTCTCAATGGCATGTCTGGCTTCTCTGAATTATGTACGTCTTATTTATGATATCTAATATTTGAAAATATCACCAATACTGCAAAAATGAAAGTATAATTTATTTTTTAGAAGCTTTTAGTTCAATATTATTAGTTACATGTAATGGGTCGTAAATGTTCCATGAATACTTTTTTGTTTGAATAAAGGTTGTGGGAAGTTTGCGTTAAGAGGACTATCACAGTGCCTGGCAAGAGAATTTCAGTCACAGGGAATACATGTTGCTCATGTTATCATTGATGGATTGGTCGGAGCACCCAGGTAAGTTGTGTGCACCTCCCTAGTCACAACTCTTCATTCATTTCAATAGGATCTTTCGTTTAGATTCCTACTCCGGTCTCAGTTATTTGGAAAAAAAATGGCTTTCGACCTTTCGTTTTATATTTAGGGAACAAGATAAAAGTAATCCTCAAACGCCTGAAATCTTACTCTAGAAAATCCATTTATTTCTCTCCAATTGCCAAACTAAAGTTACTCCATTCCTAAATAATAGTCTCATTTGGTGAAAGCATGGGTAGAAATGTGATGAGTGTGTAAGGAAAAAAATGATTGTGATTATTTTTATGGGGAAGGGGATAAAGTAAGTGATTGTTTATTGATAAAGTACAAACAAAAGTGGATGTTAGAATGGTTGGGTAGGAAAAAACAAATTTATGTAAGACATATCAATCATGATTTATGGAAAAATGGAAAAAAATGGAGAATGTTTGCATGCCCAAAAATAAAACCAGGACTAGTATAAGGGAACGCTTAATTAGGAATACAGGACTACTATTTAGAAACGGAGGGAGTAATAAAAATAACAACCCAAGCTGACCCTAGTATTCATGAGTTAGTAATAAGTTGCTGAGTCAAGCTAAATTTACAATGTTTAATCAACATGTAGATTCATCCCAAGAGAAAGAAAAAAAATTAGAAAATTAATAAAAATAATAACCCAAGCTGACCCTAGCATTCATGAGTTAGTAATAGGTTTCTGAGTCAAGGCTAAACTTAAAGTGTTTAATCAACATGTAGATTCATCCCAAGAGAAAAAAAAAATATTAGAAAATTGAAGGTATGTGTTAAGAGGAAGGCTATGCAAATCACTAGTTGGATTTAATTGATGGCACTGTAGATTAGATAGACTGAGAGTAGTGGGAAAATAATGCAGGGTGCCAAGTATATTGCAGAGAGCAAATGTTGGGGAGCAACAAAGCGGAGGAGGAGGAGCAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGATGGCCTGATGGACCCAGATGCTCTAGCTCAAACCTACTGGCACTTGCATCTTCAAGATCGCTCAGCTTGGACACAAGAGATTGACCTTCGTCCTTCAACCACATTTAGGTTCTTCTAG ATGTCAGACTCAAGCAGTTTCTCCTCAACAACCTCTAAAGGCATTGCTGCCATTGTTGGGGTAGGCCCAAAACTTGGAAAATCCATCGCCCGCAAGTTTGCTCATGAAGGCTACACAGTTGCCATCCTCTCAAGGGATTTAGTGAGGCTAGGAAGGATTGCAGAAGAGATAGCAAGGGAAGAGAAAGCTCAAGTGTTTGCCATAAGAATTGACTGCTCAGATACCAGAAGTGTTACAGAAGCTTTTGAAGGGGTTCTCTCTCTCGGATTCGTCGAAGTGTTGATCTATAATGCTGCATACCAACCACTCTCTTTGCATCCAAAAAATTTCACTGACATTCCAGTCAATTCTTTTGAGAAATCGCTCGCTGTTTCATCTGTTGGTGCCTTTCATTGTGCTAAGCAGGTTCTTCCAGGTATGATGGAGAGAGGGAAAGGGACAATACTCTTTACAGGCTGTTCAGCTTCTCTCAATGGCATGTCTGGCTTCTCTGAATTATGTTGTGGGAAGTTTGCGTTAAGAGGACTATCACAGTGCCTGGCAAGAGAATTTCAGTCACAGGGAATACATGTTGCTCATGTTATCATTGATGGATTGGTCGGAGCACCCAGGGTGCCAAGTATATTGCAGAGAGCAAATGTTGGGGAGCAACAAAGCGGAGGAGGAGGAGCAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGATGGCCTGATGGACCCAGATGCTCTAGCTCAAACCTACTGGCACTTGCATCTTCAAGATCGCTCAGCTTGGACACAAGAGATTGACCTTCGTCCTTCAACCACATTTAGGTTCTTCTAG ATGTCAGACTCAAGCAGTTTCTCCTCAACAACCTCTAAAGGCATTGCTGCCATTGTTGGGGTAGGCCCAAAACTTGGAAAATCCATCGCCCGCAAGTTTGCTCATGAAGGCTACACAGTTGCCATCCTCTCAAGGGATTTAGTGAGGCTAGGAAGGATTGCAGAAGAGATAGCAAGGGAAGAGAAAGCTCAAGTGTTTGCCATAAGAATTGACTGCTCAGATACCAGAAGTGTTACAGAAGCTTTTGAAGGGGTTCTCTCTCTCGGATTCGTCGAAGTGTTGATCTATAATGCTGCATACCAACCACTCTCTTTGCATCCAAAAAATTTCACTGACATTCCAGTCAATTCTTTTGAGAAATCGCTCGCTGTTTCATCTGTTGGTGCCTTTCATTGTGCTAAGCAGGTTCTTCCAGGTATGATGGAGAGAGGGAAAGGGACAATACTCTTTACAGGCTGTTCAGCTTCTCTCAATGGCATGTCTGGCTTCTCTGAATTATGTTGTGGGAAGTTTGCGTTAAGAGGACTATCACAGTGCCTGGCAAGAGAATTTCAGTCACAGGGAATACATGTTGCTCATGTTATCATTGATGGATTGGTCGGAGCACCCAGGGTGCCAAGTATATTGCAGAGAGCAAATGTTGGGGAGCAACAAAGCGGAGGAGGAGGAGCAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCAGCAGATGGCCTGATGGACCCAGATGCTCTAGCTCAAACCTACTGGCACTTGCATCTTCAAGATCGCTCAGCTTGGACACAAGAGATTGACCTTCGTCCTTCAACCACATTTAGGTTCTTCTAG MSDSSSFSSTTSKGIAAIVGVGPKLGKSIARKFAHEGYTVAILSRDLVRLGRIAEEIAREEKAQVFAIRIDCSDTRSVTEAFEGVLSLGFVEVLIYNAAYQPLSLHPKNFTDIPVNSFEKSLAVSSVGAFHCAKQVLPGMMERGKGTILFTGCSASLNGMSGFSELCCGKFALRGLSQCLAREFQSQGIHVAHVIIDGLVGAPRVPSILQRANVGEQQSGGGGAAVAVAAAAAAADGLMDPDALAQTYWHLHLQDRSAWTQEIDLRPSTTFRFF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo18333.1 vs. NCBI nr
Match: gi|902168403|gb|KNA07499.1| (hypothetical protein SOVF_171260 [Spinacia oleracea]) HSP 1 Score: 532.7 bits (1371), Expect = 3.700e-148 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
BLAST of Spo18333.1 vs. NCBI nr
Match: gi|731338648|ref|XP_010680432.1| (PREDICTED: 3-ketodihydrosphingosine reductase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 461.8 bits (1187), Expect = 8.100e-127 Identity = 235/273 (86.08%), Postives = 251/273 (91.94%), Query Frame = 1
BLAST of Spo18333.1 vs. NCBI nr
Match: gi|590704569|ref|XP_007047194.1| (NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]) HSP 1 Score: 396.0 bits (1016), Expect = 5.500e-107 Identity = 208/271 (76.75%), Postives = 232/271 (85.61%), Query Frame = 1
BLAST of Spo18333.1 vs. NCBI nr
Match: gi|255562615|ref|XP_002522313.1| (PREDICTED: very-long-chain 3-oxoacyl-CoA reductase [Ricinus communis]) HSP 1 Score: 393.7 bits (1010), Expect = 2.700e-106 Identity = 205/271 (75.65%), Postives = 228/271 (84.13%), Query Frame = 1
BLAST of Spo18333.1 vs. NCBI nr
Match: gi|823192482|ref|XP_012491771.1| (PREDICTED: very-long-chain 3-oxoacyl-CoA reductase [Gossypium raimondii]) HSP 1 Score: 393.3 bits (1009), Expect = 3.500e-106 Identity = 203/266 (76.32%), Postives = 225/266 (84.59%), Query Frame = 1
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJR8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171260 PE=4 SV=1) HSP 1 Score: 532.7 bits (1371), Expect = 2.600e-148 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CBJ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g134420 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 5.600e-127 Identity = 235/273 (86.08%), Postives = 251/273 (91.94%), Query Frame = 1
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Match: A0A061DHS1_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_000573 PE=4 SV=1) HSP 1 Score: 396.0 bits (1016), Expect = 3.800e-107 Identity = 208/271 (76.75%), Postives = 232/271 (85.61%), Query Frame = 1
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Match: B9S8J4_RICCO (Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_0601700 PE=4 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 1.900e-106 Identity = 205/271 (75.65%), Postives = 228/271 (84.13%), Query Frame = 1
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QWW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G210800 PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 2.500e-106 Identity = 203/266 (76.32%), Postives = 225/266 (84.59%), Query Frame = 1
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Match: DHB12_BOVIN (Very-long-chain 3-oxoacyl-CoA reductase OS=Bos taurus GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.500e-11 Identity = 49/184 (26.63%), Postives = 95/184 (51.63%), Query Frame = 1
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Match: DHB12_HUMAN (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 1.600e-10 Identity = 49/184 (26.63%), Postives = 89/184 (48.37%), Query Frame = 1
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Match: DHB12_MACFA (Very-long-chain 3-oxoacyl-CoA reductase OS=Macaca fascicularis GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.100e-9 Identity = 56/208 (26.92%), Postives = 96/208 (46.15%), Query Frame = 1
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Match: DHB12_ANAPL (Very-long-chain 3-oxoacyl-CoA reductase OS=Anas platyrhynchos GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.800e-9 Identity = 47/182 (25.82%), Postives = 84/182 (46.15%), Query Frame = 1
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 3.100e-9 Identity = 48/190 (25.26%), Postives = 82/190 (43.16%), Query Frame = 1
BLAST of Spo18333.1 vs. TAIR (Arabidopsis)
Match: AT3G50560.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 354.0 bits (907), Expect = 8.400e-98 Identity = 185/262 (70.61%), Postives = 212/262 (80.92%), Query Frame = 1
BLAST of Spo18333.1 vs. TAIR (Arabidopsis)
Match: AT5G19200.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 61.2 bits (147), Expect = 1.100e-9 Identity = 49/177 (27.68%), Postives = 75/177 (42.37%), Query Frame = 1
BLAST of Spo18333.1 vs. TAIR (Arabidopsis)
Match: AT3G06060.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 60.1 bits (144), Expect = 2.500e-9 Identity = 61/234 (26.07%), Postives = 98/234 (41.88%), Query Frame = 1
BLAST of Spo18333.1 vs. TAIR (Arabidopsis)
Match: AT3G03980.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 50.1 bits (118), Expect = 2.600e-6 Identity = 47/188 (25.00%), Postives = 81/188 (43.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18333.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18333.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18333.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18333.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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