Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAATTTGCCGAACAAGCCATAGACCATTAGGAAAAGACATGTGATCTCTACTCCGACCAATGACTCAATGAGTGAAAAACCAAAAGATTATAGAGTGACAGCCGTCAGCTCTCAAGTTATTAGTCCAATGTTTCTCTATCAATCAACCCATAACTGTTCTTCCTCACCACCTGCCTTCCTCTCATTCTCAATTTCTACCACCAAAACCAAATTAAGGTCAAACCATTTTCTCCCCCTCTCTTCTTTTGTACACTTCTCCAATAACTTCATAATCTCCAAACTAAAAACCCATTACAAAATTATTAAACTCTCATAATTTAGTAAAATAAAAACAGTATTAATAATAAATTCAGAATCTGGAGAATTGTTCTTCTTCTTCCAACTCCAGTGGACAGGAAGTGCAAGTTGTAAGGTAGCAGTATTTGGTAGGGTCTGCACTACCTCTAATTTTTAGTGCTTGTGGAGGACAAAGTCGGTGCCTTTTTCTATTTTTTATTTTTTATTTTTTTAACTTTGATTCTGAAGTAAAATTAAAAAAAAAGTTAAGGTCTTTATAGTAAGTGATTCTTCAAAATTTAATTTTAATCAAAGTTTTATTCTGATTCTATCTTCAACAAATATTTTGGGTCATTCTGAAACTTCATTTTCCTCCTTATTTCCTCTGTTTTTGCTATTTTGATCATCAGACCGTCAGTCCATCACCCCCCTTTAAATTCTCCCATTTCATCTCTCTTAAAAACCATGAACTAGAATAAAGTTTGAGTTTCTTTTTAGAGAGAGAAGCAAAAATAAACCACCCCCACAAAAAAAAAAAAAAAAGCAGGGGAGAATTTCTCATTTCTGATTTCCAATATCTGAAATGGGAGCAATATATCCAGGTTCTATGTACACAAATTCAAGTTATGATAATTGGTTGTTTGGTGGGGATTCAAAGAGCACAATATGGACAAAGGAAGAGAACAAGAGGTTTGAGAAAGCACTTGCAATATTTGATGAGAAAACTCCTGATAGATGGTCTAGAATTGCTGATATGATTCCTGGGAAATCTGTTTGGGATGTGATGAAACAGTATGAGGAATTGTTAGTTGATGTGACTGATATCGAAGCTGGTTTGGTTCCGATTCCTGGTTATCTTGCTTCTCCTTTCACTTTGGATTGGGTTGATGATCATGCCAAATTTGATCCTTTTAGGAAAAGGTCTGCTTCTATGTCTAGACCTCATGAACAAGAGAGGAAAAAGGGTGTTCCTTGGACTGAAGATGAGCATAGGTAACACCCCAAATCCAATTACTATCTTTCTTATTCTTTATTTTACTTGTTTGATAATTGTGAAAGCTGTTACACTATTATCTGCAATTTTAAACTGTTGTAGTAGACCTGATTACTAATTTTAATATCTGATTACTGTCATGTTACAATTAGGATAATATTTAGTGAAGAATGTTGAGTAATTAAGAATGAAATGTGCAGGCGTTTTCTGCTAGGACTTCAGAAACATGGGAAAGGAGACTGGAGAAACATATCAAGGAACTTTGTTATATCAAAAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTACTTCCTAAGGCAGACTTCAGGAGGGAAGGATAAACGAAGACCAAGCATTCACGATATCACTACTGCTAATTTATCAGAAAATGGTATGAATACAGTTTCAGAAACAGATCAAAAGGCATCATTTCCATTGCTTCAGAAATCATTCAACATAATGCCTAAGATGTTGCTTGATTGGAGTAACTCTAATGGTGAAGCATTCATGGTTTTCGATTCACCAACTCATGGACGGCAGAATCTGTACAGTAGTGCCTACCAAGGAGCCTCAGCCTATGTAGGATCACATTAGAGTTTTTTTTTAAAAAGGGTAAAGAAAACAACAACTATCTCTGTTTATGGTTCTTGTGTGGTAAAATCACATGTCTCAAACTCCCATCATCATCGATCAGTTCATTAATTACTCGTAGTTTGTAGACATCTACAGAATGTGAAAACATCTGAAATCTTTTGAAGGGTTACAATGTATATTTTGAATTATGATTTTTTTTCCTTTTGGTAGTACTCATCAGAATATCAATCTAGTCGTCTAGCTAGTCAATCTCAATCTTGATTTTTACAGTGACGGATCTAGGATTTTTCATATAGTGTGTCATCTTCAGAGGTGGATATAATGCTTAGATGGATTTTTCGTGTCTTATGAGAATGAACAATTCAGTTAATTTCCTTGAGCATCATGTCCTACATTCACCTATACAATGTTTAATACCATAATGTTATGTTATGCCATCATAATGCCTAGTGTATCCTTAAGATTTGCACCTTTCCAAAATTAGTAGAGCAATTATCAGAACCAAAATGACCAAGATTCCACCAAAACCCGCATCATATTACACCCCTACCAAATGGAGCAATAAGAATGAATGATACAACGTAAT TAAATTTGCCGAACAAGCCATAGACCATTAGGAAAAGACATGTGATCTCTACTCCGACCAATGACTCAATGAGTGAAAAACCAAAAGATTATAGAGTGACAGCCGTCAGCTCTCAAGTTATTAGTCCAATGTTTCTCTATCAATCAACCCATAACTGTTCTTCCTCACCACCTGCCTTCCTCTCATTCTCAATTTCTACCACCAAAACCAAATTAAGGTCAAACCATTTTCTCCCCCTCTCTTCTTTTGTACACTTCTCCAATAACTTCATAATCTCCAAACTAAAAACCCATTACAAAATTATTAAACTCTCATAATTTAGTAAAATAAAAACAGTATTAATAATAAATTCAGAATCTGGAGAATTGTTCTTCTTCTTCCAACTCCAGTGGACAGGAAGTGCAAGTTGTAAGGTAGCAGTATTTGGTAGGGTCTGCACTACCTCTAATTTTTAGTGCTTGTGGAGGACAAAGTCGGTGCCTTTTTCTATTTTTTATTTTTTATTTTTTTAACTTTGATTCTGAAGTAAAATTAAAAAAAAAGTTAAGGTCTTTATAGTAAGTGATTCTTCAAAATTTAATTTTAATCAAAGTTTTATTCTGATTCTATCTTCAACAAATATTTTGGGTCATTCTGAAACTTCATTTTCCTCCTTATTTCCTCTGTTTTTGCTATTTTGATCATCAGACCGTCAGTCCATCACCCCCCTTTAAATTCTCCCATTTCATCTCTCTTAAAAACCATGAACTAGAATAAAGTTTGAGTTTCTTTTTAGAGAGAGAAGCAAAAATAAACCACCCCCACAAAAAAAAAAAAAAAAGCAGGGGAGAATTTCTCATTTCTGATTTCCAATATCTGAAATGGGAGCAATATATCCAGGTTCTATGTACACAAATTCAAGTTATGATAATTGGTTGTTTGGTGGGGATTCAAAGAGCACAATATGGACAAAGGAAGAGAACAAGAGGTTTGAGAAAGCACTTGCAATATTTGATGAGAAAACTCCTGATAGATGGTCTAGAATTGCTGATATGATTCCTGGGAAATCTGTTTGGGATGTGATGAAACAGTATGAGGAATTGTTAGTTGATGTGACTGATATCGAAGCTGGTTTGGTTCCGATTCCTGGTTATCTTGCTTCTCCTTTCACTTTGGATTGGGTTGATGATCATGCCAAATTTGATCCTTTTAGGAAAAGGTCTGCTTCTATGTCTAGACCTCATGAACAAGAGAGGAAAAAGGGTGTTCCTTGGACTGAAGATGAGCATAGGCGTTTTCTGCTAGGACTTCAGAAACATGGGAAAGGAGACTGGAGAAACATATCAAGGAACTTTGTTATATCAAAAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTACTTCCTAAGGCAGACTTCAGGAGGGAAGGATAAACGAAGACCAAGCATTCACGATATCACTACTGCTAATTTATCAGAAAATGGTATGAATACAGTTTCAGAAACAGATCAAAAGGCATCATTTCCATTGCTTCAGAAATCATTCAACATAATGCCTAAGATGTTGCTTGATTGGAGTAACTCTAATGGTGAAGCATTCATGGTTTTCGATTCACCAACTCATGGACGGCAGAATCTGTACAGTAGTGCCTACCAAGGAGCCTCAGCCTATGTAGGATCACATTAGAGTTTTTTTTTAAAAAGGGTAAAGAAAACAACAACTATCTCTGTTTATGGTTCTTGTGTGGTAAAATCACATGTCTCAAACTCCCATCATCATCGATCAGTTCATTAATTACTCGTAGTTTGTAGACATCTACAGAATGTGAAAACATCTGAAATCTTTTGAAGGGTTACAATGTATATTTTGAATTATGATTTTTTTTCCTTTTGGTAGTACTCATCAGAATATCAATCTAGTCGTCTAGCTAGTCAATCTCAATCTTGATTTTTACAGTGACGGATCTAGGATTTTTCATATAGTGTGTCATCTTCAGAGGTGGATATAATGCTTAGATGGATTTTTCGTGTCTTATGAGAATGAACAATTCAGTTAATTTCCTTGAGCATCATGTCCTACATTCACCTATACAATGTTTAATACCATAATGTTATGTTATGCCATCATAATGCCTAGTGTATCCTTAAGATTTGCACCTTTCCAAAATTAGTAGAGCAATTATCAGAACCAAAATGACCAAGATTCCACCAAAACCCGCATCATATTACACCCCTACCAAATGGAGCAATAAGAATGAATGATACAACGTAAT ATGGGAGCAATATATCCAGGTTCTATGTACACAAATTCAAGTTATGATAATTGGTTGTTTGGTGGGGATTCAAAGAGCACAATATGGACAAAGGAAGAGAACAAGAGGTTTGAGAAAGCACTTGCAATATTTGATGAGAAAACTCCTGATAGATGGTCTAGAATTGCTGATATGATTCCTGGGAAATCTGTTTGGGATGTGATGAAACAGTATGAGGAATTGTTAGTTGATGTGACTGATATCGAAGCTGGTTTGGTTCCGATTCCTGGTTATCTTGCTTCTCCTTTCACTTTGGATTGGGTTGATGATCATGCCAAATTTGATCCTTTTAGGAAAAGGTCTGCTTCTATGTCTAGACCTCATGAACAAGAGAGGAAAAAGGGTGTTCCTTGGACTGAAGATGAGCATAGGCGTTTTCTGCTAGGACTTCAGAAACATGGGAAAGGAGACTGGAGAAACATATCAAGGAACTTTGTTATATCAAAAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTACTTCCTAAGGCAGACTTCAGGAGGGAAGGATAAACGAAGACCAAGCATTCACGATATCACTACTGCTAATTTATCAGAAAATGGTATGAATACAGTTTCAGAAACAGATCAAAAGGCATCATTTCCATTGCTTCAGAAATCATTCAACATAATGCCTAAGATGTTGCTTGATTGGAGTAACTCTAATGGTGAAGCATTCATGGTTTTCGATTCACCAACTCATGGACGGCAGAATCTGTACAGTAGTGCCTACCAAGGAGCCTCAGCCTATGTAGGATCACATTAG MGAIYPGSMYTNSSYDNWLFGGDSKSTIWTKEENKRFEKALAIFDEKTPDRWSRIADMIPGKSVWDVMKQYEELLVDVTDIEAGLVPIPGYLASPFTLDWVDDHAKFDPFRKRSASMSRPHEQERKKGVPWTEDEHRRFLLGLQKHGKGDWRNISRNFVISKTPTQVASHAQKYFLRQTSGGKDKRRPSIHDITTANLSENGMNTVSETDQKASFPLLQKSFNIMPKMLLDWSNSNGEAFMVFDSPTHGRQNLYSSAYQGASAYVGSH Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo13430.1 vs. NCBI nr
Match: gi|902222586|gb|KNA19213.1| (hypothetical protein SOVF_063320 [Spinacia oleracea]) HSP 1 Score: 556.2 bits (1432), Expect = 3.100e-155 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
BLAST of Spo13430.1 vs. NCBI nr
Match: gi|731315144|ref|XP_010690085.1| (PREDICTED: transcription factor DIVARICATA-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 447.2 bits (1149), Expect = 2.000e-122 Identity = 227/279 (81.36%), Postives = 249/279 (89.25%), Query Frame = 1
BLAST of Spo13430.1 vs. NCBI nr
Match: gi|661882483|emb|CDP14063.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 307.0 bits (785), Expect = 3.300e-80 Identity = 164/267 (61.42%), Postives = 189/267 (70.79%), Query Frame = 1
BLAST of Spo13430.1 vs. NCBI nr
Match: gi|225466356|ref|XP_002275014.1| (PREDICTED: transcription factor DIVARICATA [Vitis vinifera]) HSP 1 Score: 303.5 bits (776), Expect = 3.600e-79 Identity = 164/271 (60.52%), Postives = 201/271 (74.17%), Query Frame = 1
BLAST of Spo13430.1 vs. NCBI nr
Match: gi|802548187|ref|XP_012091086.1| (PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]) HSP 1 Score: 300.1 bits (767), Expect = 4.000e-78 Identity = 161/280 (57.50%), Postives = 201/280 (71.79%), Query Frame = 1
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI92_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063320 PE=4 SV=1) HSP 1 Score: 556.2 bits (1432), Expect = 2.100e-155 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 1
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWZ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024260 PE=4 SV=1) HSP 1 Score: 447.2 bits (1149), Expect = 1.400e-122 Identity = 227/279 (81.36%), Postives = 249/279 (89.25%), Query Frame = 1
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Match: A0A068V2E5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039248001 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 2.300e-80 Identity = 164/267 (61.42%), Postives = 189/267 (70.79%), Query Frame = 1
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Match: F6HNL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03370 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 2.500e-79 Identity = 164/271 (60.52%), Postives = 201/271 (74.17%), Query Frame = 1
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Match: A0A067LKH9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01329 PE=4 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 2.800e-78 Identity = 161/280 (57.50%), Postives = 201/280 (71.79%), Query Frame = 1
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 7.300e-72 Identity = 146/277 (52.71%), Postives = 185/277 (66.79%), Query Frame = 1
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 3.000e-25 Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 2.400e-14 Identity = 39/80 (48.75%), Postives = 59/80 (73.75%), Query Frame = 1
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.500e-13 Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.300e-12 Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein) HSP 1 Score: 248.1 bits (632), Expect = 6.300e-66 Identity = 131/259 (50.58%), Postives = 169/259 (65.25%), Query Frame = 1
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein) HSP 1 Score: 238.8 bits (608), Expect = 3.800e-63 Identity = 120/181 (66.30%), Postives = 139/181 (76.80%), Query Frame = 1
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator) HSP 1 Score: 238.4 bits (607), Expect = 5.000e-63 Identity = 115/198 (58.08%), Postives = 142/198 (71.72%), Query Frame = 1
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Match: AT5G05790.1 (Duplicated homeodomain-like superfamily protein) HSP 1 Score: 235.7 bits (600), Expect = 3.300e-62 Identity = 116/175 (66.29%), Postives = 140/175 (80.00%), Query Frame = 1
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Match: AT5G01200.1 (Duplicated homeodomain-like superfamily protein) HSP 1 Score: 219.9 bits (559), Expect = 1.800e-57 Identity = 120/238 (50.42%), Postives = 155/238 (65.13%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13430.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13430.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13430.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13430.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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