Spo06766 (gene) | SpinachBase

Overview


Name	Spo06766
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(At2g39500/F12L6.16) (Expressed protein)
Location	SpoScf_02002 : 16914 .. 19930 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTGGCCCTACTCAACACGACTCGAATCGAACCCAAGTCTTTCATATCTGTCCTGCTTTGGAGGGTAAGTGGGTAACCCAACAATACCGCCTCGAATCTGACCCGACCCTCGTTAACCCGGCTGGGTCGAAAGCTCTAGATCATCAAATTCTCTATAGGGTGTTAATGGTTAAGCCACTTCTTGATTGTTTAAACAAACAATGGAGTTCCAAAATTTAATCAAAGACAAGAAATTTTGGTTCGCTTCCGTCTTAATTGCTTGGGCTGCTGGACTTCAGGTAATTCCTACCGACTTTTATTTAATTATTAAACTAATTTTGAATTCTGCACATTTTGAAAGTTTCGCCATTGATTATTATCATCAATTTTTATGCAATTTCTGTTTCAATTGTTTTTTAGAGGTTTTTTGAAATTTAATTCTTGGTGAATATAGGGGCATATGATGTGGTTACAAAGGCAGGATGCTTTCAAGCAGAAATTCGGGGATTTAAACGAAAGTGATGATCAGAAGAACTTAAATTGAATGCTCAGGTTTGTTTTAAATTAGGGTTTACGGGTTGTAACTGGTAGTATTGACAAATTAGTGAGAATCGTTGTAATTTTATTGAATTGATTTTACAAATTAGAATTAATAAATGATCTGTTATTGTTGTTTGGATTGCAAATTTTATTTATTACTTCGGATTTAGAAGCATGTTCGTTTGTTCGAGACGGTAGGTCGAAGAATCGATAGTAATAACTGATTTTGCATCCTGTAAATGATGGAGTAGTGTTATCCTTTTGATTAAGATCTAGATGAGGTTGGAAATTGAGTTCAAAGTATCTAGTGTGGTGGAGTTTTTATTGGAACTTGTACTTTTTTTCTAGCCTCTACTGGATGTTTATTGTCATGATCGAGATTGGACTTTTACATGATACAGACTGAAAATGTGTTGTAAACTTGTAGTAGTAGATTATTTTCTCTCAGTTTGGGTTATTGCAGTTTGTTTTATTGACTTCCGGTAACAAAGAAAATTGTTGTGAAGTACACTATAGAGCTTTTCCTGTCCTGCTGGTTAGCCATTGTTGTTATCCTCAAAGTATAATCTTAGAGAAAGTTGTGATGATTTGTGGGAAAAGTATGTATGAACAAATTATTATTGGAAGCTCACTTTGATATTGGTAATTAGATGATCCTGCAAATAAGTTTATTTCAAGTTCAATTTGGATATTATAGTGCGTTTAAGATAAATATAGTTCAATTTAATTCAGTATAAAAACATCAGAGCCAAACTAATTATTTAAAATTCAGTTATGAAAGGTACTTTGTGAAGTAACATACACAAATCTTTGAAGGTATCAAAACTAGTGTAATTTGGACCTATACACAATAAAATTAGTTTGGTTCACTTCTTCACAAAGAAGTTCAACTGAGGTTAGCACAGAGTCGTTCCAGTTAAAAAGAACACACTATTGTGCAGCGTTAGGCGCTGTTGAAGTCTGTTTGAAGTTTGAACAATAAAATTCTTTCAGTTGCTCATCCCCGAACCTCGAATGAAGGGTTTCTGGTTAGTGAGATGGTGACATAGTATGAGGGTTTGCCAATTTGTGCAAAGAAAGGTTACGAATCTCGACTTATATGATACAGTTGATGCTTTCTCCCTCCATGGATGTTGTCAATATAGTGTTCTATTACAAGATATCAGGTGGTTGATTTATTGCCTAATTCAAAATAATTGTCTGGTGAAGTTTAGAATACTACTTGGTTGAAAATAGCAAGAGAAAAGAAGGGAAAGAGAAGAGGAATGAAAAAATCGAGGGTATTGGTGAGATTGCAGATTTCTATTGATTGCAAATTTTCAATTTATAGAACTGAAGGCCTTTATTATAATGCAATGCTATCACTTCACGTAAAATACGTCTCAGATGTATGTTATCTGTTAAGAAGATTCTGATGGGTTGATGGCAGAGGGTCCTATTTGAAATCTGGTGTTTGAAATGCCTTTCTGAAAAATATATTCAATTCAATTCATTCTTCGGTTACAAAAGTATTCGTGATTTTGATGTTAGGTTTTAGTTAGAAGTGTTAGCTTCAATTGACACAGGTGAAGTCTAACAAATTTGCTATGTCTATTTTAATATATGCATTCTGCAGATGTGCTTACACTTCTGCATCATTATAGTTTTCAAAGTGTTTCTTCACCTCCATAAAATCTTGGATTCTGGATGGAATTTTGCTATTGATGTGAGATACTGATATTTGATTTATATTGTTGATGTAGAGTGATTGATCTCTTGGACCTCAAAACCTCTTATTGTGAATAAATCTTGGTAGGAGTGGTTTAAGTCGGTGAAGAGTCTTCTGTATGGAGCTTTAATCTTGTACTCTCTTTGATACAGATTCCTGCCATTGTTCAACCAGTCTTGAGAAAAGCTCCAGTCTGGCCAGCAAATAAAATCTCCAGCTCTTTTGCCAGCATGGATGGCAAATGTAGATATTATCCTTTATCCGAAATTGTTGGGTGTATCTTTTTGCTAGAAGCAATCATATGTTGTTAACTAGACCCAACTAGATTCAGTTTTATCTCGAATATCTACTTGACTTTTCAAATATTATTGGAAACTATTTAGTTTATTTGGGAAGAACACCAAAATGAAGAGTTTGGAGAAGATTCAACTTCCTGGAAATGATATCTGATTTCCTCTTCCTGGATTACTTCTTGAAGGTTCCTTGTGTCGTGATGGAGTTACTAGATCATTCCAGATCATTCCAGATCATTATCAATCTTCTGGTTGGTTGATTTTGTGTCAACTTTAGCATAGTTTGCTTAATGAATTTGTAGGTTACTCAAATTAAAGTTATGTAACTCGTCTCAAGACCATTTTGTATTTTGATTAAATCAGATGGCTTGAATTCCCGACCACTAGTTTGTCTATATTGTTTCCTAATCTCAGATGTTAAGACAACGTATGATGTAGACAAGATTCGTTCTCAGTTGGGTACCACCCCTTTAAGTCTTTACCAACTAAACTAG

mRNA sequence

AAAGTTGGCCCTACTCAACACGACTCGAATCGAACCCAAGTCTTTCATATCTGTCCTGCTTTGGAGGGTAAGTGGGTAACCCAACAATACCGCCTCGAATCTGACCCGACCCTCGTTAACCCGGCTGGGTCGAAAGCTCTAGATCATCAAATTCTCTATAGGGTGTTAATGGTTAAGCCACTTCTTGATTGTTTAAACAAACAATGGAGTTCCAAAATTTAATCAAAGACAAGAAATTTTGGTTCGCTTCCGTCTTAATTGCTTGGGCTGCTGGACTTCAGGGGCATATGATGTGGTTACAAAGGCAGGATGCTTTCAAGCAGAAATTCGGGGATTTAAACGAAAATGTTAAGACAACGTATGATGTAGACAAGATTCGTTCTCAGTTGGGTACCACCCCTTTAAGTCTTTACCAACTAAACTAG

Coding sequence (CDS)

ATGGAGTTCCAAAATTTAATCAAAGACAAGAAATTTTGGTTCGCTTCCGTCTTAATTGCTTGGGCTGCTGGACTTCAGGGGCATATGATGTGGTTACAAAGGCAGGATGCTTTCAAGCAGAAATTCGGGGATTTAAACGAAAATGTTAAGACAACGTATGATGTAGACAAGATTCGTTCTCAGTTGGGTACCACCCCTTTAAGTCTTTACCAACTAAACTAG

Protein sequence

MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNENVKTTYDVDKIRSQLGTTPLSLYQLN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06766.1	Spo06766.1	mRNA

Homology

[Close]

BLAST of Spo06766.1 vs. NCBI nr
Match: gi|902239474|gb|KNA25612.1| (hypothetical protein SOVF_005030 [Spinacia oleracea])

HSP 1 Score: 103.2 bits (256), Expect = 1.900e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
          MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNE+
Sbjct: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNES 48

[Close]

BLAST of Spo06766.1 vs. NCBI nr
Match: gi|731318632|ref|XP_010669831.1| (PREDICTED: uncharacterized protein LOC104886964 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-15
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNENVK 51
          ME +NL+KDKKFW AS LIAWAAGLQGHMMWLQ+Q++FKQKFGDLN+  K
Sbjct: 1  MEVKNLVKDKKFWVASFLIAWAAGLQGHMMWLQKQESFKQKFGDLNDTDK 50

[Close]

BLAST of Spo06766.1 vs. NCBI nr
Match: gi|1009120505|ref|XP_015876958.1| (PREDICTED: uncharacterized protein LOC107413512 [Ziziphus jujuba])

HSP 1 Score: 89.0 bits (219), Expect = 3.800e-15
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNENVKTTYD 55
          ME +N++KDKKFWFAS LIAWAA LQGHMMWLQRQD+FKQKFG+L +  + T D
Sbjct: 1  MEIRNVLKDKKFWFASFLIAWAAALQGHMMWLQRQDSFKQKFGNLEQKNEDTVD 54

[Close]

BLAST of Spo06766.1 vs. NCBI nr
Match: gi|802672816|ref|XP_012081555.1| (PREDICTED: uncharacterized protein LOC105641579 [Jatropha curcas])

HSP 1 Score: 86.7 bits (213), Expect = 1.900e-14
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
          ME + L+KDKKFWFAS LIAWAA LQGHMMWLQRQD+FKQKFG  NEN
Sbjct: 1  MEAKQLLKDKKFWFASFLIAWAAALQGHMMWLQRQDSFKQKFGTENEN 48

[Close]

BLAST of Spo06766.1 vs. NCBI nr
Match: gi|296086277|emb|CBI31718.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 5.500e-14
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1


		  
Query: 1   MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
           ME + +IKDKKFW AS L+AWAA LQGHMMWLQRQDAFKQKFGDL ++
Sbjct: 335 MEVKKIIKDKKFWVASFLVAWAAALQGHMMWLQRQDAFKQKFGDLGQD 382

[Close]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3B9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_005030 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
          MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNE+
Sbjct: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNES 48

[Close]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D083_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g037260 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-15
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNENVK 51
          ME +NL+KDKKFW AS LIAWAAGLQGHMMWLQ+Q++FKQKFGDLN+  K
Sbjct: 1  MEVKNLVKDKKFWVASFLIAWAAGLQGHMMWLQKQESFKQKFGDLNDTDK 50

[Close]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Match: F6HN91_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g00460 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.800e-14
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1


		  
Query: 1   MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
           ME + +IKDKKFW AS L+AWAA LQGHMMWLQRQDAFKQKFGDL ++
Sbjct: 334 MEVKKIIKDKKFWVASFLVAWAAALQGHMMWLQRQDAFKQKFGDLGQD 381

[Close]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Match: B9T144_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190620 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.500e-13
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
          M+ + L+ DKKFWFAS LI WAA LQGHMMWLQRQD+FKQKFG LN+N
Sbjct: 1  MKAKQLLNDKKFWFASFLIGWAAALQGHMMWLQRQDSFKQKFGTLNQN 48

[Close]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Match: A0A072VRS9_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g115355 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-13
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1


		  
Query: 1  MEFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNENVKTT 53
          ME + ++KDKKFWFAS LI WAA LQGHMMWLQRQD+FKQKF DL EN +TT
Sbjct: 1  MELKKVMKDKKFWFASFLITWAAALQGHMMWLQRQDSFKQKFPDL-ENDQTT 51

[Close]

BLAST of Spo06766.1 vs. TAIR (Arabidopsis)
Match: AT2G39500.1 (unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 1.500e-14
Identity = 29/47 (61.70%), Postives = 41/47 (87.23%), Query Frame = 1


		  
Query: 2  EFQNLIKDKKFWFASVLIAWAAGLQGHMMWLQRQDAFKQKFGDLNEN 49
          + + ++KDK+FW AS +I WAAGLQGHMMWLQ+Q++FKQKFG ++E+
Sbjct: 6  DVKTIVKDKRFWIASFIIVWAAGLQGHMMWLQKQESFKQKFGTIDED 52

The following BLAST results are available for this feature:

BLAST of Spo06766.1 vs. NCBI nr
BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
BLAST of Spo06766.1 vs. ExPASy Swiss-Prot
BLAST of Spo06766.1 vs. TAIR (Arabidopsis)

BLAST of Spo06766.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902239474\|gb\|KNA25612.1\|	1.9e-19	97.9	hypothetical protein SOVF_0050...	[more]
gi\|731318632\|ref\|XP_010669831.1\|	2.9e-15	78.0	PREDICTED: uncharacterized pro...	[more]
gi\|1009120505\|ref\|XP_015876958.1\|	3.8e-15	72.2	PREDICTED: uncharacterized pro...	[more]
gi\|802672816\|ref\|XP_012081555.1\|	1.9e-14	81.2	PREDICTED: uncharacterized pro...	[more]
gi\|296086277\|emb\|CBI31718.3\|	5.5e-14	77.0	unnamed protein product [Vitis...	[more]

BLAST of Spo06766.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S3B9_SPIOL	1.4e-19	97.9	Uncharacterized protein OS=Spi...	[more]
A0A0J8D083_BETVU	2.0e-15	78.0	Uncharacterized protein OS=Bet...	[more]
F6HN91_VITVI	3.8e-14	77.0	Putative uncharacterized prote...	[more]
B9T144_RICCO	1.5e-13	75.0	Putative uncharacterized prote...	[more]
A0A072VRS9_MEDTR	1.9e-13	75.0	Transmembrane protein, putativ...	[more]

BLAST of Spo06766.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo06766.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G39500.1	1.5e-14	61.7	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15447	0.74	Barchart \| Table
Spo24046	0.73	Barchart \| Table
Spo23044	0.72	Barchart \| Table
Spo28146	0.72	Barchart \| Table
Spo17860	0.69	Barchart \| Table
Spo15273	0.69	Barchart \| Table
Spo07603	0.69	Barchart \| Table
Spo25853	0.69	Barchart \| Table
Spo21748	0.69	Barchart \| Table
Spo19431	0.69	Barchart \| Table
Spo00677	0.68	Barchart \| Table
Spo16079	0.68	Barchart \| Table
Spo17571	0.67	Barchart \| Table
Spo16801	0.67	Barchart \| Table
Spo05496	0.67	Barchart \| Table
Spo02628	0.67	Barchart \| Table
Spo06972	0.67	Barchart \| Table
Spo11923	0.66	Barchart \| Table
Spo15317	0.66	Barchart \| Table
Spo19393	0.66	Barchart \| Table
Spo05915	0.66	Barchart \| Table
Spo20651	0.66	Barchart \| Table
Spo24425	0.66	Barchart \| Table
Spo01589	0.66	Barchart \| Table
Spo26688	0.66	Barchart \| Table
Spo11960	0.66	Barchart \| Table
Spo28267	0.65	Barchart \| Table
Spo06148	0.65	Barchart \| Table
Spo23800	0.65	Barchart \| Table
Spo12884	0.65	Barchart \| Table
Spo01448	0.65	Barchart \| Table
Spo10373	0.65	Barchart \| Table
Spo04593	0.65	Barchart \| Table