Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAGGAGTACATAGAATAGAAAAATGATTAAAAAAAGCGAAAGTGGGATTTGCTGTCTAATAAAAATGCATCGTGGAATGGGCCTCTAGGGATTCCCTCAATCTATTCTCTCCCCTTATTCTAATAACTAAAGGAATGTTACGTAGTGATGCCTACTCACTCACTGTCTTCTTCCTTTCTCGATCCCTGTGAGAGATTCATCTCTTCTTGCTTTTTCTTCTTTGAAATTCTTCACTCTTCAAATTAACAACATTTATCCTGTAACAATCACGTGAAATTTATTTATCTTTCTTTTTTTTTAAAAAAACATTAACATTTTATACTCAATCTTTACCACTAGACTAAAACATAATTAATCGAACATGATTATATATAATTAATTTAATTTCTGGCAGTGGCTAGCTTATCTTGAAGTTGAGTATTTAAATCAATCTCCCACATTCCTTACCACCTGTTATTTGTCTGCTTACTGATTGTTGTTTGAGAGAGAGAGAGAGAAAATGCTGGGAAACTGTGAGAAAATGGTACTCATCTCTTCACCTTCTAATGAATGGCCACTGCAGGTTTGGCTTCTTTTTCTCTCTCTTACTATCATTTTCTTCTCTCTTGAGCATTTCGTCGAATAATACACATGCATTACATACCCACTATAATTTTGGACCCCTTTTGTTTTTTTTGTTTTCTAGCATTTGGAAAGAGTATCTCATTTCATATAACCCCCTTATTATGTGGGTATTATTAATTTTGCAACCCTAAATAAAAACCACCCACAAAATTTTAAACTTTTTTGAGATTTTTCCTTGTTGTTGTTTCTTGTTGAGTTTTTATCAGATAGATGATCCAAAAGGGACCTTCAACTACAACAACAACAACAACATGGCCTCAGTAGCAACAGCAGCCGCAGCGACAATCAGAACTGGTGTAGGGGAAAGAGTCATGGATCAGAAAACTGCAGCGATTGCGCTGCAAGATCAGCAACAGCAAAAACAACAGCAGCAACAGCAACAACAACAGCAACAACAACAACAGAACCAGGAGGCATTAAGATGTCCACGATGCGACTCGACGAACACGAAGTTCTGCTACTACAACAACTACAGCTTAACACAACCAAGGCATTTTTGCAAGGCGTGTAAGAGGTACTGGACTAGAGGAGGTACTTTAAGAAATGTTCCTGTAGGTGGTGGTTGTAGGAAGAACAAAAGGGTTAAAAGACCATCTAACAACAACAACAGCAACATTTCTACTACTACTTCTTTGTCTAATCCTAATATTACTAGTAGTAATACTCTTGAAGGTTCTGTTAATTCATCTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGGTTCCGGTGCTCAAATTCATGACTTGATATCTTCGGGTTCAAATCACCATCCTCATATGTCGTACTATGGGTTACCCACTAATTCTGACATCAATTTCCCTTTCTCAAGGTATGATCTTCAAAACCCACATCATCATCATCAAATCAATGGGCTTGGATTAGGGTTTTCATCAGGGTTGGTCCATAATATGAATAGTATGAACATTCATAATAATAATAATAATAATAGTAATAGTAATAATAACAAGCAGATTTTCCAAGATTTGATCTCATCAAACCCTTTACTTTCTCCCAACACATCAACAACTACTATCACTACTGCTACTGCTACTACAACTTCACCCACAATATCTTCTCTTTTGGCTTCTATGAAGGGAGGTAGTATTAACAATCATTTTCAGACACTATTGCCCTCGTACGAAGATGATCTCCACATGAAAGGAAATGGGCAAAATGGTCCTAATGTGAAAATGGAATTTGATGGTCAAAATAGGTCAATGGATCATCATCATCATCATCATCTGCATCAACAATGGAATAATCAAGCTCATCAAAATGGAATAAATCATCATCAACCATTATCCATGGTATCGCCTTCGGATCCGTCCATTCTTTGGGGTAATGCAGGAGCTAATCTTGGTGCTTGGCTTAATCCTTCAGAAAACAACAATCTTGGTTCTTCAGTTCCTTCTTTGATCTAA TGAGGAGTACATAGAATAGAAAAATGATTAAAAAAAGCGAAAGTGGGATTTGCTGTCTAATAAAAATGCATCGTGGAATGGGCCTCTAGGGATTCCCTCAATCTATTCTCTCCCCTTATTCTAATAACTAAAGGAATGTTACGTAGTGATGCCTACTCACTCACTGTCTTCTTCCTTTCTCGATCCCTGTGAGAGATTCATCTCTTCTTGCTTTTTCTTCTTTGAAATTCTTCACTCTTCAAATTAACAACATTTATCCTGTAACAATCACGTGAAATTTATTTATCTTTCTTTTTTTTTAAAAAAACATTAACATTTTATACTCAATCTTTACCACTAGACTAAAACATAATTAATCGAACATGATTATATATAATTAATTTAATTTCTGGCAGTGGCTAGCTTATCTTGAAGTTGAGTATTTAAATCAATCTCCCACATTCCTTACCACCTGTTATTTGTCTGCTTACTGATTGTTGTTTGAGAGAGAGAGAGAGAAAATGCTGGGAAACTGTGAGAAAATGGTACTCATCTCTTCACCTTCTAATGAATGGCCACTGCAGATAGATGATCCAAAAGGGACCTTCAACTACAACAACAACAACAACATGGCCTCAGTAGCAACAGCAGCCGCAGCGACAATCAGAACTGGTGTAGGGGAAAGAGTCATGGATCAGAAAACTGCAGCGATTGCGCTGCAAGATCAGCAACAGCAAAAACAACAGCAGCAACAGCAACAACAACAGCAACAACAACAACAGAACCAGGAGGCATTAAGATGTCCACGATGCGACTCGACGAACACGAAGTTCTGCTACTACAACAACTACAGCTTAACACAACCAAGGCATTTTTGCAAGGCGTGTAAGAGGTACTGGACTAGAGGAGGTACTTTAAGAAATGTTCCTGTAGGTGGTGGTTGTAGGAAGAACAAAAGGGTTAAAAGACCATCTAACAACAACAACAGCAACATTTCTACTACTACTTCTTTGTCTAATCCTAATATTACTAGTAGTAATACTCTTGAAGGTTCTGTTAATTCATCTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGGTTCCGGTGCTCAAATTCATGACTTGATATCTTCGGGTTCAAATCACCATCCTCATATGTCGTACTATGGGTTACCCACTAATTCTGACATCAATTTCCCTTTCTCAAGGTATGATCTTCAAAACCCACATCATCATCATCAAATCAATGGGCTTGGATTAGGGTTTTCATCAGGGTTGGTCCATAATATGAATAGTATGAACATTCATAATAATAATAATAATAATAGTAATAGTAATAATAACAAGCAGATTTTCCAAGATTTGATCTCATCAAACCCTTTACTTTCTCCCAACACATCAACAACTACTATCACTACTGCTACTGCTACTACAACTTCACCCACAATATCTTCTCTTTTGGCTTCTATGAAGGGAGGTAGTATTAACAATCATTTTCAGACACTATTGCCCTCGTACGAAGATGATCTCCACATGAAAGGAAATGGGCAAAATGGTCCTAATGTGAAAATGGAATTTGATGGTCAAAATAGGTCAATGGATCATCATCATCATCATCATCTGCATCAACAATGGAATAATCAAGCTCATCAAAATGGAATAAATCATCATCAACCATTATCCATGGTATCGCCTTCGGATCCGTCCATTCTTTGGGGTAATGCAGGAGCTAATCTTGGTGCTTGGCTTAATCCTTCAGAAAACAACAATCTTGGTTCTTCAGTTCCTTCTTTGATCTAA ATGCTGGGAAACTGTGAGAAAATGGTACTCATCTCTTCACCTTCTAATGAATGGCCACTGCAGATAGATGATCCAAAAGGGACCTTCAACTACAACAACAACAACAACATGGCCTCAGTAGCAACAGCAGCCGCAGCGACAATCAGAACTGGTGTAGGGGAAAGAGTCATGGATCAGAAAACTGCAGCGATTGCGCTGCAAGATCAGCAACAGCAAAAACAACAGCAGCAACAGCAACAACAACAGCAACAACAACAACAGAACCAGGAGGCATTAAGATGTCCACGATGCGACTCGACGAACACGAAGTTCTGCTACTACAACAACTACAGCTTAACACAACCAAGGCATTTTTGCAAGGCGTGTAAGAGGTACTGGACTAGAGGAGGTACTTTAAGAAATGTTCCTGTAGGTGGTGGTTGTAGGAAGAACAAAAGGGTTAAAAGACCATCTAACAACAACAACAGCAACATTTCTACTACTACTTCTTTGTCTAATCCTAATATTACTAGTAGTAATACTCTTGAAGGTTCTGTTAATTCATCTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGCTGGTTCCGGTGCTCAAATTCATGACTTGATATCTTCGGGTTCAAATCACCATCCTCATATGTCGTACTATGGGTTACCCACTAATTCTGACATCAATTTCCCTTTCTCAAGGTATGATCTTCAAAACCCACATCATCATCATCAAATCAATGGGCTTGGATTAGGGTTTTCATCAGGGTTGGTCCATAATATGAATAGTATGAACATTCATAATAATAATAATAATAATAGTAATAGTAATAATAACAAGCAGATTTTCCAAGATTTGATCTCATCAAACCCTTTACTTTCTCCCAACACATCAACAACTACTATCACTACTGCTACTGCTACTACAACTTCACCCACAATATCTTCTCTTTTGGCTTCTATGAAGGGAGGTAGTATTAACAATCATTTTCAGACACTATTGCCCTCGTACGAAGATGATCTCCACATGAAAGGAAATGGGCAAAATGGTCCTAATGTGAAAATGGAATTTGATGGTCAAAATAGGTCAATGGATCATCATCATCATCATCATCTGCATCAACAATGGAATAATCAAGCTCATCAAAATGGAATAAATCATCATCAACCATTATCCATGGTATCGCCTTCGGATCCGTCCATTCTTTGGGGTAATGCAGGAGCTAATCTTGGTGCTTGGCTTAATCCTTCAGAAAACAACAATCTTGGTTCTTCAGTTCCTTCTTTGATCTAA MLGNCEKMVLISSPSNEWPLQIDDPKGTFNYNNNNNMASVATAAAATIRTGVGERVMDQKTAAIALQDQQQQKQQQQQQQQQQQQQQNQEALRCPRCDSTNTKFCYYNNYSLTQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPSNNNNSNISTTTSLSNPNITSSNTLEGSVNSSSGGGGGGGGGGAAGSGAQIHDLISSGSNHHPHMSYYGLPTNSDINFPFSRYDLQNPHHHHQINGLGLGFSSGLVHNMNSMNIHNNNNNNSNSNNNKQIFQDLISSNPLLSPNTSTTTITTATATTTSPTISSLLASMKGGSINNHFQTLLPSYEDDLHMKGNGQNGPNVKMEFDGQNRSMDHHHHHHLHQQWNNQAHQNGINHHQPLSMVSPSDPSILWGNAGANLGAWLNPSENNNLGSSVPSLI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25524.1 vs. NCBI nr
Match: gi|902225298|gb|KNA20020.1| (hypothetical protein SOVF_056250 [Spinacia oleracea]) HSP 1 Score: 798.1 bits (2060), Expect = 7.400e-228 Identity = 425/430 (98.84%), Postives = 426/430 (99.07%), Query Frame = 1
BLAST of Spo25524.1 vs. NCBI nr
Match: gi|731350298|ref|XP_010686432.1| (PREDICTED: dof zinc finger protein DOF1.4 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 441.4 bits (1134), Expect = 1.800e-120 Identity = 293/464 (63.15%), Postives = 326/464 (70.26%), Query Frame = 1
BLAST of Spo25524.1 vs. NCBI nr
Match: gi|731350296|ref|XP_010686431.1| (PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 441.0 bits (1133), Expect = 2.300e-120 Identity = 293/465 (63.01%), Postives = 326/465 (70.11%), Query Frame = 1
BLAST of Spo25524.1 vs. NCBI nr
Match: gi|870852716|gb|KMT04631.1| (hypothetical protein BVRB_8g182840 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 400.2 bits (1027), Expect = 4.500e-108 Identity = 268/422 (63.51%), Postives = 298/422 (70.62%), Query Frame = 1
BLAST of Spo25524.1 vs. NCBI nr
Match: gi|590624358|ref|XP_007025580.1| (F-box family protein, putative [Theobroma cacao]) HSP 1 Score: 233.4 bits (594), Expect = 7.300e-58 Identity = 204/460 (44.35%), Postives = 256/460 (55.65%), Query Frame = 1
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKK6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056250 PE=4 SV=1) HSP 1 Score: 798.1 bits (2060), Expect = 5.200e-228 Identity = 425/430 (98.84%), Postives = 426/430 (99.07%), Query Frame = 1
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENS2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g182840 PE=4 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 3.100e-108 Identity = 268/422 (63.51%), Postives = 298/422 (70.62%), Query Frame = 1
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Match: A0A061GGE9_THECC (F-box family protein, putative OS=Theobroma cacao GN=TCM_029834 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 5.100e-58 Identity = 204/460 (44.35%), Postives = 256/460 (55.65%), Query Frame = 1
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Match: A0A068TVZ0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029128001 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.400e-47 Identity = 188/446 (42.15%), Postives = 242/446 (54.26%), Query Frame = 1
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Match: B9RBB8_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1674060 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.800e-47 Identity = 178/451 (39.47%), Postives = 227/451 (50.33%), Query Frame = 1
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 8.700e-27 Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 1.100e-26 Identity = 137/381 (35.96%), Postives = 180/381 (47.24%), Query Frame = 1
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2) HSP 1 Score: 117.1 bits (292), Expect = 4.800e-25 Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 1
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.400e-24 Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Match: DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 5.800e-23 Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 1
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Match: AT1G28310.2 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 122.9 bits (307), Expect = 4.900e-28 Identity = 137/382 (35.86%), Postives = 180/382 (47.12%), Query Frame = 1
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Match: AT5G02460.1 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 122.9 bits (307), Expect = 4.900e-28 Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Match: AT3G55370.3 (OBF-binding protein 3) HSP 1 Score: 117.1 bits (292), Expect = 2.700e-26 Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 1
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Match: AT3G52440.1 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 114.8 bits (286), Expect = 1.300e-25 Identity = 52/74 (70.27%), Postives = 62/74 (83.78%), Query Frame = 1
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6) HSP 1 Score: 110.2 bits (274), Expect = 3.300e-24 Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25524.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25524.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25524.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25524.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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