Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATTCCTCCAAAAAGGCAAAACCCTCTCTCATCACGAAAACAAAACAAAATTCGTACTTAATTTTTATTACAAGGTGAGAATTTGTGGTGTCAGACAATTGCCACTTTCTCTCTCCTCTAGCTTCTTCTAGCAACAGGGCTTGTTACAATGGCGTGTGCTTCGCGCTCAGTAATATCAATTGCAGCAAATTCTAGCTCATTTTCATTCAAAACGCACCAATTCCGTAACAAATTTGGGCGCATTGATGCTTCCAGATTCAAAATCCGAGCTTCTTCTGTTGAGCCTGAGGATTGCAATGTCGAAGAATGCGCCCCTGATAAAGAGGTTTCTCTCTCTCTTTTTTATTTTCTTTTTAATTCTTAATTTATGATTTGTGGGTATTTCTTTCATTTTGTCTTTCAGCTTGAAAATTGTTTGTTATGTATGTAACGGGATTATTGTTTTGCTGATAGGTTTCGGAATGAAAATTTTAATAATTGAGTTGGTGTTGGGCTATTAGGGGATCAAGAAAAATGAATGGTTTAGCTCATTTCATGACCAATTTCTCTTTTATACACGAGTACTGGATATGTAATTCTCTACCTAGTTTGTTAAATGGGCCAAAAATCCAACTCTTTTGTTATACGGAGTAATTGTCTTTCTCAATGCGCGGTAAGCAGGGGATTAGAGTATTAGCAAAATATTGAAATCCATATTGGGTCTTTTGAGAAGAGTCTCCCCCTTTAGTCTTTAGTGTGGCTGTTGTTGTAGAAAGATGCCATTAATGTGAAGGAGTTCAGCTTTGTCCAGCAATAGAGTTGAACTAGATTATAGATTACTAAATGCTGCTTAGGGCATGCTTGGATTGAGGGTAATACATTAAAGGGGTAATAAAAGTAATGATCATACCATGCTTAAGCTTGTTTCTCATTCAAGAATGTTTTAAGGATCCTAAAGTAATTTGAAACCTAGGAACTAGCAAGGGCTCGCAACTCGCAAGTGGTAAATTACGTGGGTAACTCAAAGCAAACCTGATTTTGTGGCAGTAGCTAGTTTCTAGTGAAATAATTGGACAGAACACAATCTAAGGGGCAATGTGTTTCCTGTAAACACAAAAAACAGAACTGGGACTAGGACAGAACACAATCTAAGGGGCAATGTGTTTCTCTTGGGGTTTCAATCTTGGAACCGATACCCAGATGAGTAGCGCTTTCCCAGCGATGGTGCACGTTCAGTGGAAAGCGGACAAGATTTTATGTTTTTGATCTCGTTTGGAGTTCTTTCATCTTTGCAATGCAATTGAAAGTCTGCATCAACCTGCTTCCCAACACAAGTGTAACTTTTGGTGTTTAACACTAATGATAGATTCTGACTGCATCTAATTTTTCTAGCTGCTTTAGTACACTTTGTTGGAACCATTCTTGATTTAGCTTTTCCCGATCCACCTACAATTTTTTTAACTGGAGGTGTCTTTTATACAATTTCGATGTTTTTTGAACCTGATATTTGCAAATAAGCTGTCATTATTATTGTGAATATGTGATGGTTTGATTTTCTTGGCTATTTTATCATCAGGTGGGAAAGGTTAGCGTGGAATGGTTAGCTGGAGAAAAGACCATGGTGGCTGGAACATTTCCACCTCGGAAAAAAGCTTGGTCAGGATATGTAGAGAAGGACACTGCTGGCCAGACAAATATATATTCAGTTGAGGTCAGTGATTTTCAGCTACACTGTTCTCTCATTCTTGCTTGGGTTTTTTTATTTTCGAAATATCCGAATTTTGATAAATGATAATCAGATGTACTTAGTTACCGTGAATATTTAGCAGCTCGTGGTCTGAATCTTGCATGTTGTTTAGGCTAACTTAGTAACATTCATAAAAAAATTGCAGCCTACGGTGTACATAGCAGAAAGCGCTATCAGCTCAGGAACTGCAGGTTCTTCTTCTGATGGTGCAGAGAACACATCAGCTATTGCAGCATTTCTTGCCCTATTTATTGTTGCAGGTGCCTCATCAATCCTGCTTCAGGTTGGTAAAAATGCTCCCCAAATGCAAACAACTGTGTATTCTGGACCTTCACTCAGCTACTACATAACCAAATTTAAGCCCGCTGAAATCATTGAAACTTCCGCACCCAGCCCAAGTGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAAACTGAAAGTTCCTCAGCCACTGAGTTTATCCAGAGTGAAAGTTCCTTAGCCACTGAGTCAAGCCAGAGTGCAACTTCCTTAGCCACTGAGTCTATCCAGAGTGAAAGTTCCTTAGGCACTGAGTCAAGCCAGAGTGAAAGTTCCCCAGCCACTGAGTCTCAAACCTCAACCCCCGAAGTTCCACAAGTACCAGTTGATTCCGGAGCTGAGCTAGAGCCTTCTATCACAATTGCGGAAAATGCGTCTTAGATGAATTTTCACTGCTACTCTGTATTGTATAAGTCTGCAATTTTCGTAGTCCTGTAAAGCAACGTCTACTACATACTCCCGTATATTTTACATAAACATAGAGATGCTCAATTTACCAGTATATTGTTCGGGCAGAACTCGAATTTTCGTGTTGTCCTCCAATTCCGTAATTCATGCAACATTTGTTATAACAGAAGCAAGAAATATTATAAATATCGTAAATAAATAACACAAAG AATTCCTCCAAAAAGGCAAAACCCTCTCTCATCACGAAAACAAAACAAAATTCGTACTTAATTTTTATTACAAGGTGAGAATTTGTGGTGTCAGACAATTGCCACTTTCTCTCTCCTCTAGCTTCTTCTAGCAACAGGGCTTGTTACAATGGCGTGTGCTTCGCGCTCAGTAATATCAATTGCAGCAAATTCTAGCTCATTTTCATTCAAAACGCACCAATTCCGTAACAAATTTGGGCGCATTGATGCTTCCAGATTCAAAATCCGAGCTTCTTCTGTTGAGCCTGAGGATTGCAATGTCGAAGAATGCGCCCCTGATAAAGAGGTGGGAAAGGTTAGCGTGGAATGGTTAGCTGGAGAAAAGACCATGGTGGCTGGAACATTTCCACCTCGGAAAAAAGCTTGGTCAGGATATGTAGAGAAGGACACTGCTGGCCAGACAAATATATATTCAGTTGAGCCTACGGTGTACATAGCAGAAAGCGCTATCAGCTCAGGAACTGCAGGTTCTTCTTCTGATGGTGCAGAGAACACATCAGCTATTGCAGCATTTCTTGCCCTATTTATTGTTGCAGGTGCCTCATCAATCCTGCTTCAGGTTGGTAAAAATGCTCCCCAAATGCAAACAACTGTGTATTCTGGACCTTCACTCAGCTACTACATAACCAAATTTAAGCCCGCTGAAATCATTGAAACTTCCGCACCCAGCCCAAGTGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAAACTGAAAGTTCCTCAGCCACTGAGTTTATCCAGAGTGAAAGTTCCTTAGCCACTGAGTCAAGCCAGAGTGCAACTTCCTTAGCCACTGAGTCTATCCAGAGTGAAAGTTCCTTAGGCACTGAGTCAAGCCAGAGTGAAAGTTCCCCAGCCACTGAGTCTCAAACCTCAACCCCCGAAGTTCCACAAGTACCAGTTGATTCCGGAGCTGAGCTAGAGCCTTCTATCACAATTGCGGAAAATGCGTCTTAGATGAATTTTCACTGCTACTCTGTATTGTATAAGTCTGCAATTTTCGTAGTCCTGTAAAGCAACGTCTACTACATACTCCCGTATATTTTACATAAACATAGAGATGCTCAATTTACCAGTATATTGTTCGGGCAGAACTCGAATTTTCGTGTTGTCCTCCAATTCCGTAATTCATGCAACATTTGTTATAACAGAAGCAAGAAATATTATAAATATCGTAAATAAATAACACAAAG ATGGCGTGTGCTTCGCGCTCAGTAATATCAATTGCAGCAAATTCTAGCTCATTTTCATTCAAAACGCACCAATTCCGTAACAAATTTGGGCGCATTGATGCTTCCAGATTCAAAATCCGAGCTTCTTCTGTTGAGCCTGAGGATTGCAATGTCGAAGAATGCGCCCCTGATAAAGAGGTGGGAAAGGTTAGCGTGGAATGGTTAGCTGGAGAAAAGACCATGGTGGCTGGAACATTTCCACCTCGGAAAAAAGCTTGGTCAGGATATGTAGAGAAGGACACTGCTGGCCAGACAAATATATATTCAGTTGAGCCTACGGTGTACATAGCAGAAAGCGCTATCAGCTCAGGAACTGCAGGTTCTTCTTCTGATGGTGCAGAGAACACATCAGCTATTGCAGCATTTCTTGCCCTATTTATTGTTGCAGGTGCCTCATCAATCCTGCTTCAGGTTGGTAAAAATGCTCCCCAAATGCAAACAACTGTGTATTCTGGACCTTCACTCAGCTACTACATAACCAAATTTAAGCCCGCTGAAATCATTGAAACTTCCGCACCCAGCCCAAGTGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAGACCGAAAGTTCCTCAGCCACTGAGTCAATCCAAACTGAAAGTTCCTCAGCCACTGAGTTTATCCAGAGTGAAAGTTCCTTAGCCACTGAGTCAAGCCAGAGTGCAACTTCCTTAGCCACTGAGTCTATCCAGAGTGAAAGTTCCTTAGGCACTGAGTCAAGCCAGAGTGAAAGTTCCCCAGCCACTGAGTCTCAAACCTCAACCCCCGAAGTTCCACAAGTACCAGTTGATTCCGGAGCTGAGCTAGAGCCTTCTATCACAATTGCGGAAAATGCGTCTTAG MACASRSVISIAANSSSFSFKTHQFRNKFGRIDASRFKIRASSVEPEDCNVEECAPDKEVGKVSVEWLAGEKTMVAGTFPPRKKAWSGYVEKDTAGQTNIYSVEPTVYIAESAISSGTAGSSSDGAENTSAIAAFLALFIVAGASSILLQVGKNAPQMQTTVYSGPSLSYYITKFKPAEIIETSAPSPSESSSATESIQTESSSATESIQTESSSATESIQTESSSATEFIQSESSLATESSQSATSLATESIQSESSLGTESSQSESSPATESQTSTPEVPQVPVDSGAELEPSITIAENAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo17054.1 vs. NCBI nr
Match: gi|902221199|gb|KNA18819.1| (hypothetical protein SOVF_066850 [Spinacia oleracea]) HSP 1 Score: 503.1 bits (1294), Expect = 3.500e-139 Identity = 291/303 (96.04%), Postives = 292/303 (96.37%), Query Frame = 1
BLAST of Spo17054.1 vs. NCBI nr
Match: gi|731319960|ref|XP_010670549.1| (PREDICTED: uncharacterized protein LOC104887586 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.0 bits (798), Expect = 1.100e-81 Identity = 186/262 (70.99%), Postives = 207/262 (79.01%), Query Frame = 1
BLAST of Spo17054.1 vs. NCBI nr
Match: gi|747043840|ref|XP_011085919.1| (PREDICTED: uncharacterized protein LOC105167802 [Sesamum indicum]) HSP 1 Score: 235.7 bits (600), Expect = 1.000e-58 Identity = 138/207 (66.67%), Postives = 155/207 (74.88%), Query Frame = 1
BLAST of Spo17054.1 vs. NCBI nr
Match: gi|1021560658|ref|XP_016171579.1| (PREDICTED: uncharacterized protein LOC107613902 [Arachis ipaensis]) HSP 1 Score: 231.9 bits (590), Expect = 1.500e-57 Identity = 141/222 (63.51%), Postives = 163/222 (73.42%), Query Frame = 1
BLAST of Spo17054.1 vs. NCBI nr
Match: gi|720050911|ref|XP_010271924.1| (PREDICTED: uncharacterized protein LOC104607865 [Nelumbo nucifera]) HSP 1 Score: 231.1 bits (588), Expect = 2.600e-57 Identity = 142/233 (60.94%), Postives = 172/233 (73.82%), Query Frame = 1
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIQ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066850 PE=4 SV=1) HSP 1 Score: 503.1 bits (1294), Expect = 2.400e-139 Identity = 291/303 (96.04%), Postives = 292/303 (96.37%), Query Frame = 1
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTU2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042050 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 8.000e-82 Identity = 186/262 (70.99%), Postives = 207/262 (79.01%), Query Frame = 1
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MIK2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10052 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 2.300e-57 Identity = 136/231 (58.87%), Postives = 169/231 (73.16%), Query Frame = 1
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Match: A0A059BI26_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03205 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 3.100e-57 Identity = 140/227 (61.67%), Postives = 169/227 (74.45%), Query Frame = 1
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Match: A0A067KZZ4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24567 PE=4 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 1.200e-56 Identity = 146/234 (62.39%), Postives = 172/234 (73.50%), Query Frame = 1
BLAST of Spo17054.1 vs. TAIR (Arabidopsis)
Match: AT5G07020.1 (proline-rich family protein) HSP 1 Score: 206.1 bits (523), Expect = 3.100e-53 Identity = 122/200 (61.00%), Postives = 149/200 (74.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo17054.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo17054.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo17054.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo17054.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|