Spo11288 (gene)

Overview
NameSpo11288
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa-like protein
LocationSpoScf_02295 : 2807 .. 3329 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGGTATTTTCTCTCTCTTCTTTCTCTCAAGAATTTTCACAAACAGTTGGTGTGCATTTTCATTTTTTACGAGCTTTTTGCTGTCTCATTTTTCTAGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACAGATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTGATTGTATAG

mRNA sequence

ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACAGATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTGATTGTATAG

Coding sequence (CDS)

ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACAGATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTGATTGTATAG

Protein sequence

MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISWYYSLSCFLDFLFGVFFVIV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11288.1Spo11288.1mRNA


Homology
[Close]
BLAST of Spo11288.1 vs. NCBI nr
Match: gi|902143828|gb|KNA04876.1| (hypothetical protein SOVF_195630 [Spinacia oleracea])

HSP 1 Score: 271.2 bits (692), Expect = 1.100e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60
           MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL
Sbjct: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60

Query: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120
           SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH
Sbjct: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120

Query: 121 ISWYYSLSCFLDFLFGVFFVIV 143
           ISWYYSLSCFLDFLFGVFFVIV
Sbjct: 121 ISWYYSLSCFLDFLFGVFFVIV 142
[Close]
BLAST of Spo11288.1 vs. NCBI nr
Match: gi|731361663|ref|XP_010692484.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 165.2 bits (417), Expect = 8.100e-38
Identity = 95/127 (74.80%), Postives = 101/127 (79.53%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRG----GEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPK 60
           MEWSEK E S          GEG GG     Y +EN KRA+LNSTL+ALLDDPIL+DVPK
Sbjct: 1   MEWSEKKEDSASASASSSWVGEGLGG-----YNNENVKRARLNSTLSALLDDPILADVPK 60

Query: 61  KPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQM 120
           KPSLSDVDTLIS ELGSAMRIS+LKLDSTSFDVVVMNS TVKDLKL I KKV +MEQSQM
Sbjct: 61  KPSLSDVDTLISFELGSAMRISILKLDSTSFDVVVMNSDTVKDLKLAIIKKVNQMEQSQM 120

Query: 121 GHRHISW 124
           GHR ISW
Sbjct: 121 GHRQISW 122
[Close]
BLAST of Spo11288.1 vs. NCBI nr
Match: gi|976920429|gb|KVI05156.1| (hypothetical protein Ccrd_016473 [Cynara cardunculus var. scolymus])

HSP 1 Score: 164.1 bits (414), Expect = 1.800e-37
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 1 

		  

Query: 28  YCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSF 87
           Y S N K+AKLNSTLAALLDDP+L+DVPKKP+LSDVDTLISLELGSAMR+SVLKLD+TSF
Sbjct: 36  YNSNNVKKAKLNSTLAALLDDPVLADVPKKPTLSDVDTLISLELGSAMRVSVLKLDNTSF 95

Query: 88  DVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISWYYSL 128
           DV +MNSATVKDLKL IKKK+ EMEQS+MGHRHISW+  L
Sbjct: 96  DVALMNSATVKDLKLAIKKKINEMEQSKMGHRHISWFVPL 135
[Close]
BLAST of Spo11288.1 vs. NCBI nr
Match: gi|590594717|ref|XP_007017930.1| (Ubiquitin-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 4.500e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 172 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 231

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS+MGHRHISW
Sbjct: 232 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 269
[Close]
BLAST of Spo11288.1 vs. NCBI nr
Match: gi|590594714|ref|XP_007017929.1| (Ubiquitin-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 4.500e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 234 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 293

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS+MGHRHISW
Sbjct: 294 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 331
[Close]
BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195630 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.300e-70
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60
           MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL
Sbjct: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60

Query: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120
           SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH
Sbjct: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120

Query: 121 ISWYYSLSCFLDFLFGVFFVIV 143
           ISWYYSLSCFLDFLFGVFFVIV
Sbjct: 121 ISWYYSLSCFLDFLFGVFFVIV 142
[Close]
BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BI80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020500 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.700e-38
Identity = 95/127 (74.80%), Postives = 101/127 (79.53%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRG----GEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPK 60
           MEWSEK E S          GEG GG     Y +EN KRA+LNSTL+ALLDDPIL+DVPK
Sbjct: 1   MEWSEKKEDSASASASSSWVGEGLGG-----YNNENVKRARLNSTLSALLDDPILADVPK 60

Query: 61  KPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQM 120
           KPSLSDVDTLIS ELGSAMRIS+LKLDSTSFDVVVMNS TVKDLKL I KKV +MEQSQM
Sbjct: 61  KPSLSDVDTLISFELGSAMRISILKLDSTSFDVVVMNSDTVKDLKLAIIKKVNQMEQSQM 120

Query: 121 GHRHISW 124
           GHR ISW
Sbjct: 121 GHRQISW 122
[Close]
BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Match: A0A103Y9T9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_016473 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.300e-37
Identity = 82/100 (82.00%), Postives = 92/100 (92.00%), Query Frame = 1 

		  

Query: 28  YCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSF 87
           Y S N K+AKLNSTLAALLDDP+L+DVPKKP+LSDVDTLISLELGSAMR+SVLKLD+TSF
Sbjct: 36  YNSNNVKKAKLNSTLAALLDDPVLADVPKKPTLSDVDTLISLELGSAMRVSVLKLDNTSF 95

Query: 88  DVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISWYYSL 128
           DV +MNSATVKDLKL IKKK+ EMEQS+MGHRHISW+  L
Sbjct: 96  DVALMNSATVKDLKLAIKKKINEMEQSKMGHRHISWFVPL 135
[Close]
BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Match: A0A061FL17_THECC (Ubiquitin-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.100e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 234 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 293

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS+MGHRHISW
Sbjct: 294 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 331
[Close]
BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Match: A0A061FCZ7_THECC (Ubiquitin-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.100e-36
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 172 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 231

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS+MGHRHISW
Sbjct: 232 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 269
[Close]
BLAST of Spo11288.1 vs. ExPASy Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.400e-29
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 

		  

Query: 34  KRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMN 93
           KR KL S L+ LL DPIL+DVP+ P+LSDV TL+SLE GSAMR+SV+KLD +S DV VMN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 94  SATVKDLKLCIKKKVTEMEQSQMGHRHISWYYSLSCF 131
           SAT+KDLKL IKKKV EMEQ+ MGHRHISW +  S F
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNF 107
[Close]
BLAST of Spo11288.1 vs. ExPASy Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-10
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1 

		  

Query: 42  LAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLK 101
           LA ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ SATV DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 102 LCIKKKVTEMEQSQMGHRHISWYY 126
             I++ V   ++ + G +HISW Y
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSY 91
[Close]
BLAST of Spo11288.1 vs. ExPASy Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-9
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1 

		  

Query: 45  LLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCI 104
           ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ +ATV DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 105 KKKVTEMEQSQMGHRHISWYY 126
           ++ V   ++ + G +HISW Y
Sbjct: 62  QRYVQLKQEREGGVQHISWSY 82
[Close]
BLAST of Spo11288.1 vs. ExPASy Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-9
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1 

		  

Query: 45  LLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCI 104
           ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ +ATV DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 105 KKKVTEMEQSQMGHRHISWYY 126
           ++ V   ++ + G +HISW Y
Sbjct: 62  QRYVQLRQEREGGIQHISWSY 82
[Close]
BLAST of Spo11288.1 vs. TAIR (Arabidopsis)
Match: AT3G07860.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.300e-30
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 

		  

Query: 34  KRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMN 93
           KR KL S L+ LL DPIL+DVP+ P+LSDV TL+SLE GSAMR+SV+KLD +S DV VMN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 94  SATVKDLKLCIKKKVTEMEQSQMGHRHISWYYSLSCF 131
           SAT+KDLKL IKKKV EMEQ+ MGHRHISW +  S F
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNF 107
The following BLAST results are available for this feature:
BLAST of Spo11288.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902143828|gb|KNA04876.1|1.1e-69100.hypothetical protein SOVF_1956... [more]
gi|731361663|ref|XP_010692484.1|8.1e-3874.8PREDICTED: U11/U12 small nucle... [more]
gi|976920429|gb|KVI05156.1|1.8e-3782.0hypothetical protein Ccrd_0164... [more]
gi|590594717|ref|XP_007017930.1|4.5e-3682.6Ubiquitin-like superfamily pro... [more]
gi|590594714|ref|XP_007017929.1|4.5e-3682.6Ubiquitin-like superfamily pro... [more]
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BLAST of Spo11288.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QEA8_SPIOL7.3e-70100.Uncharacterized protein OS=Spi... [more]
A0A0J8BI80_BETVU5.7e-3874.8Uncharacterized protein OS=Bet... [more]
A0A103Y9T9_CYNCS1.3e-3782.0Uncharacterized protein OS=Cyn... [more]
A0A061FL17_THECC3.1e-3682.6Ubiquitin-like superfamily pro... [more]
A0A061FCZ7_THECC3.1e-3682.6Ubiquitin-like superfamily pro... [more]
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BLAST of Spo11288.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
U1125_ARATH2.4e-2970.1U11/U12 small nuclear ribonucl... [more]
SNR25_HUMAN1.9e-1042.8U11/U12 small nuclear ribonucl... [more]
SNR25_MOUSE2.7e-940.7U11/U12 small nuclear ribonucl... [more]
SNR25_BOVIN2.7e-940.7U11/U12 small nuclear ribonucl... [more]
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BLAST of Spo11288.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G07860.11.3e-3070.1Ubiquitin-like superfamily pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 69..125
score: 4.9
NoneNo IPR availablePANTHERPTHR14942FAMILY NOT NAMEDcoord: 28..125
score: 2.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0009932 cell tip growth
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0007030 Golgi organization
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009409 response to cold
biological_process GO:0006096 glycolytic process
biological_process GO:0006972 hyperosmotic response
biological_process GO:0006457 protein folding
biological_process GO:0010162 seed dormancy process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006949 syncytium formation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0006833 water transport
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0048767 root hair elongation
biological_process GO:0007018 microtubule-based movement
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0046686 response to cadmium ion
biological_process GO:0051258 protein polymerization
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0030001 metal ion transport
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006412 translation
cellular_component GO:0005618 cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005874 microtubule
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005737 cytoplasm
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0044424 intracellular part
cellular_component GO:0005840 ribosome
cellular_component GO:0048046 apoplast
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0005179 hormone activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo249020.98Barchart | Table
Spo035270.80Barchart | Table
Spo143800.79Barchart | Table
Spo086910.79Barchart | Table
Spo019990.79Barchart | Table
Spo194410.77Barchart | Table
Spo029280.77Barchart | Table
Spo206470.76Barchart | Table
Spo230380.76Barchart | Table
Spo249180.75Barchart | Table
Spo069040.75Barchart | Table
Spo121910.75Barchart | Table
Spo189010.75Barchart | Table
Spo059090.74Barchart | Table
Spo225050.74Barchart | Table
Spo176620.74Barchart | Table
Spo070160.73Barchart | Table
Spo134810.73Barchart | Table
Spo056940.73Barchart | Table
Spo236220.73Barchart | Table
Spo118500.72Barchart | Table
Spo070170.72Barchart | Table
Spo035730.72Barchart | Table
Spo105970.72Barchart | Table
Spo179030.72Barchart | Table
Spo050640.72Barchart | Table
Spo156410.72Barchart | Table
Spo036260.71Barchart | Table
Spo192360.71Barchart | Table
Spo253060.71Barchart | Table
Spo023970.71Barchart | Table
Spo093760.71Barchart | Table
Spo051140.70Barchart | Table
Spo224010.70Barchart | Table
Spo256350.70Barchart | Table
Spo151600.70Barchart | Table
Spo267260.70Barchart | Table
Spo159390.70Barchart | Table
Spo232200.69Barchart | Table
Spo045270.69Barchart | Table
Spo101470.69Barchart | Table
Spo132790.69Barchart | Table
Spo137940.69Barchart | Table
Spo199700.69Barchart | Table
Spo209970.69Barchart | Table
Spo217640.69Barchart | Table
Spo229360.69Barchart | Table
Spo229390.69Barchart | Table
Spo148750.68Barchart | Table
Spo103900.68Barchart | Table
Spo222820.68Barchart | Table
Spo039790.68Barchart | Table
Spo062820.68Barchart | Table
Spo116430.68Barchart | Table
Spo136210.68Barchart | Table
Spo210680.68Barchart | Table
Spo159610.67Barchart | Table
Spo076680.67Barchart | Table
Spo223940.67Barchart | Table
Spo074170.67Barchart | Table
Spo063180.67Barchart | Table
Spo078210.67Barchart | Table
Spo031310.66Barchart | Table
Spo000550.66Barchart | Table
Spo163670.66Barchart | Table
Spo243950.66Barchart | Table
Spo240010.66Barchart | Table
Spo247750.66Barchart | Table
Spo126810.66Barchart | Table
Spo113790.66Barchart | Table
Spo071450.66Barchart | Table
Spo050900.66Barchart | Table
Spo022180.66Barchart | Table
Spo043900.66Barchart | Table
Spo015350.66Barchart | Table
Spo211860.66Barchart | Table
Spo033150.66Barchart | Table
Spo264880.66Barchart | Table
Spo003630.66Barchart | Table
Spo230010.66Barchart | Table
Spo105990.65Barchart | Table
Spo150500.65Barchart | Table
Spo187190.65Barchart | Table
Spo202840.65Barchart | Table
Spo204600.65Barchart | Table
Spo010610.65Barchart | Table
Spo029420.65Barchart | Table
Spo248740.65Barchart | Table
Spo028380.65Barchart | Table