Spo23102 (gene)

Overview
NameSpo23102
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionEXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages;
LocationSpoScf_02330 : 9469 .. 12066 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGGATTAGGGGTCCACGAAGAGATGGTTAAGGTTGAGTTCAAGCTTGCTAAGATGAGACGACGTCAGACTTCCATTTTGGTAAGAACTTGGCTTCATTATCAGTTTAATCAAGTCCAGTTTCAGTTTAAATTTATTGAGTAACATCTCATCTGTGAAGTAACTCTGCCATCTTGAGGTAGCTGCGCACTCGTGAAATCGTGCCAAAGTTTTGAAATCATGATCCATTTTGTTGTGTCCATAATTTATTAAGTTCAGTTTCGTACTATTTCCATCATTTGTACCTAAATTGACATAATACAAAAGCATAATTATATGAAGGGACTGAAATTATTGTTGATTAATTATTATTATTATTATTATTTATTATTTGAGAGTGTTAATATTAGAAGGGCAAAATCGTACTTTTCTACTCTGAATGAGGGCGTTTTTGGAAAACGCGGGCGTCAAATAACGATACACTTTGGTAAGGGTGGCATATACGAATACGAATACGAATATACGATAACTGGATTTACTGGTAGTGTGTTGGATTAGAAGCGTCATTTGTCGGTGTTGAAGAGTTGCGAAACCACCTTGATCGTAAGATCTAAAAGCTCCAACTGGTTTCCAATTGGTGTTTTGGCGATGGCTTCTACGGAGGGTTTGGTTCCCATAACTAGGGCTTATTTGTCTTCTTATTATGATAACTATCCTTTCGAACCGCTCTCCGACGATGTAGCTACCCTCACTACGGATATGCGCTCCTTCATCACTGACTTGCAGACACATACTCCGCTTACTCAAGGTTCCTATTCCTTCTTTTACTTCTTTCCTTCAATTTGGAATTTATTAATTTGTTTTTTGTAAATGAATTGGTTAATTGTAATTGAATCGGGAGAATGCCAAGTTAATTGATTGATTTGCTTGGATATGAATTCGGAGAATGCTAAGTTAATTGATTGATTGCTTGTATATCAATTGAATTGCTAAGTTAATTAATCATATGATATGATATAATACGAATTGTGCATCGTTCTGCAGGTGAGAGTCTTGTGGTGGATGGAGTGGATCATCAACCACCTCATAAAATTGACGAGAATATGTGGAAGAACCGAGAACACATAGAAGAGATCATCTTTATGCTTCAACCACCACAATGGCCAACTACGGTATTCACCAACTAGCTCAATCCATTTAACCTCTATCATTCTGTTAACGGTGTCAACTCACTTCTCTTGTGCATACAGCTTCATCAACAATCCAGATTGCCTCCCATTTTTGAGCATCTCAAACTTAAATGTGAAAACGCATTGAACACATTGGAATCCTTTCAATCAAAAAACGCGGATAATGTATTTAATACAGGTTAGCTCTTCTCTCCAGATACCAACTGTAATTGAATAACATTTCTCGACTATTTCTGTATTCAGTTTAGAATTTTGGTTAGAGACATTCTCCATCTATAAATTTGATTTGAAGCAACGTCAATAGTTGATACTTTTCCTCATTCCTTCGGAAAAATTTCACGTTCTATTTGTAGCATGAGTTTGAGTGGTACTCCTATAATACTAAGTGCTTTTTTGGCTGGCTAACATTGAAATGAATGGTATATGCCACAAGTTGCTCGAAGTTGTAAAATATCCATTTAAATTCTTCCGTGGTATGTAAGAGCTCAAAACTTAAGTTGTCATTTTCAAATGTTTCCTGACCGATTTCATATCTGAAATAAAATGTCCCTTGTAATGTTATCTTAAGGTAAAAGTATTATAATGGATCTGGTTTTACTGCCAGAAGGTTCTTATTGCAGCAGAGGATTTTCTCTAGCTTTTCTTTTGGTCTTATTCGGTGTATAAAAAATCTCAAGGCACATCAAGGTGATTGGAAGTTCCCTGCGCCTTACCCCTCAGGGAACTTTTATGCCCCTCAGGTGCATCTCGTTGAAATCGATGTGCCTAGACCACAAAAAGTGCATGACCCTAACGCCTTTCCCCTCAGCGCCTTAGTCGCGCTTTTTTAGACACTGGTCTTTTTCCGATTGTTTTAGTAGTAATCTCTAATAAAATAAAGTTACTATTAAATTTCCCTGCTCCGGATATAGGAGTAGGACGATGGATTATCTCCTTCTTTTAGGCTTTTGAAAAATTGGCTAAAGTTCCTATTCTGAAGGTACATCAGTGGCATTAACATCGTTTTCTCTTGCACGGATCGTGGAGCAATGGAGAAGGTGGTATGAGGGATGATGTTGATGTGTGTTTGACTGTTTAGAATAACGTAATCAAATATTTTTAGACCAGTGGAATATGGAAAATAGAAGGTTTGCCTAAGTCATGCAGTTTCCAAACCCGCTGCTGTGTTGGTAGTTCAGGTGTTCTGTTACATACTCAAACAATTCTTCGTCGGTCTAGTAAGAAAGGGTTTGTTATACAATAGAGGGGATCCCCTATTGTGCTCTTGTTGGAATGATTAAGGAACACAAGAATATGACATCCATTTTAAGGCAATATGTAGGTTAACTCATTTTCTTAGAGGGATTTGTGTTTGTTAGTGTTTTGTGATCTTCATGGTATAGGGATCTTAGTTTTAGAAAGTGCCAGGTGCATAGGGTCCTTGGAGCC

mRNA sequence

CAATGGATTAGGGGTCCACGAAGAGATGGTTAAGGTTGAGTTCAAGCTTGCTAAGATGAGACGACGTCAGACTTCCATTTTGCGTCATTTGTCGGTGTTGAAGAGTTGCGAAACCACCTTGATCGTAAGATCTAAAAGCTCCAACTGGTTTCCAATTGGTGTTTTGGCGATGGCTTCTACGGAGGGTTTGGTTCCCATAACTAGGGCTTATTTGTCTTCTTATTATGATAACTATCCTTTCGAACCGCTCTCCGACGATGTAGCTACCCTCACTACGGATATGCGCTCCTTCATCACTGACTTGCAGACACATACTCCGCTTACTCAAGGTGAGAGTCTTGTGGTGGATGGAGTGGATCATCAACCACCTCATAAAATTGACGAGAATATGTGGAAGAACCGAGAACACATAGAAGAGATCATCTTTATGCTTCAACCACCACAATGGCCAACTACGGTGCATAGGGTCCTTGGAGCC

Coding sequence (CDS)

ATGGTTAAGGTTGAGTTCAAGCTTGCTAAGATGAGACGACGTCAGACTTCCATTTTGCGTCATTTGTCGGTGTTGAAGAGTTGCGAAACCACCTTGATCGTAAGATCTAAAAGCTCCAACTGGTTTCCAATTGGTGTTTTGGCGATGGCTTCTACGGAGGGTTTGGTTCCCATAACTAGGGCTTATTTGTCTTCTTATTATGATAACTATCCTTTCGAACCGCTCTCCGACGATGTAGCTACCCTCACTACGGATATGCGCTCCTTCATCACTGACTTGCAGACACATACTCCGCTTACTCAAGGTGAGAGTCTTGTGGTGGATGGAGTGGATCATCAACCACCTCATAAAATTGACGAGAATATGTGGAAGAACCGAGAACACATAGAAGAGATCATCTTTATGCTTCAACCACCACAATGGCCAACTACGGTGCATAGGGTCCTTGGAGCC

Protein sequence

MVKVEFKLAKMRRRQTSILRHLSVLKSCETTLIVRSKSSNWFPIGVLAMASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVDGVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTTVHRVLGA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23102.1Spo23102.1mRNA


Homology
[Close]
BLAST of Spo23102.1 vs. NCBI nr
Match: gi|902169580|gb|KNA07680.1| (hypothetical protein SOVF_169690 [Spinacia oleracea])

HSP 1 Score: 208.4 bits (529), Expect = 8.900e-51
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD
Sbjct: 1   MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTTVHR 148
           GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTT+H+
Sbjct: 61  GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTTLHQ 99
[Close]
BLAST of Spo23102.1 vs. NCBI nr
Match: gi|731325318|ref|XP_010673452.1| (PREDICTED: uncharacterized protein LOC104889827 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 145.6 bits (366), Expect = 7.100e-32
Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITRAYL+SYY+ YPF PLS DVATL+  +RS IT+ QTH    QGES VVD
Sbjct: 1   MASTEGLVPITRAYLASYYEKYPFVPLSADVATLSAQIRSIITNFQTH----QGESSVVD 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTT 145
            VDH+ PHKIDENMWKNREHIEEIIF+L    WPTT
Sbjct: 61  EVDHEAPHKIDENMWKNREHIEEIIFLLDRTHWPTT 92
[Close]
BLAST of Spo23102.1 vs. NCBI nr
Match: gi|703162360|ref|XP_010113031.1| (hypothetical protein L484_022756 [Morus notabilis])

HSP 1 Score: 141.0 bits (354), Expect = 1.700e-30
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 

		  

Query: 50  ASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVDG 109
           ASTEGLVPITRA+LSSYYD YPF PLSDDV+ L++++RSF  D+    P  QGE L++D 
Sbjct: 67  ASTEGLVPITRAFLSSYYDKYPFSPLSDDVSRLSSEIRSFANDVIADIPPNQGEKLLLDE 126

Query: 110 VDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
            D +PPHKIDENMWKNREHIEEIIF+L+ P WP
Sbjct: 127 ADCRPPHKIDENMWKNREHIEEIIFLLESPHWP 159
[Close]
BLAST of Spo23102.1 vs. NCBI nr
Match: gi|590648752|ref|XP_007032239.1| (Uncharacterized protein isoform 2 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITR +L+SYYD YPF+PLSDDV+ L+ ++RSF  DL    P TQGESL++ 
Sbjct: 1   MASTEGLVPITRTFLASYYDKYPFDPLSDDVSRLSFEIRSFAQDLLQGLPPTQGESLLIQ 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
             D QPPHKIDENMWKNREHIEEI+F+L+   WP
Sbjct: 61  EADSQPPHKIDENMWKNREHIEEILFLLERSHWP 94
[Close]
BLAST of Spo23102.1 vs. NCBI nr
Match: gi|590648755|ref|XP_007032240.1| (Uncharacterized protein isoform 3 [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITR +L+SYYD YPF+PLSDDV+ L+ ++RSF  DL    P TQGESL++ 
Sbjct: 1   MASTEGLVPITRTFLASYYDKYPFDPLSDDVSRLSFEIRSFAQDLLQGLPPTQGESLLIQ 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
             D QPPHKIDENMWKNREHIEEI+F+L+   WP
Sbjct: 61  EADSQPPHKIDENMWKNREHIEEILFLLERSHWP 94
[Close]
BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKA3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_169690 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.200e-51
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD
Sbjct: 1   MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTTVHR 148
           GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTT+H+
Sbjct: 61  GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTTLHQ 99
[Close]
BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLC7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g070820 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.900e-32
Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITRAYL+SYY+ YPF PLS DVATL+  +RS IT+ QTH    QGES VVD
Sbjct: 1   MASTEGLVPITRAYLASYYEKYPFVPLSADVATLSAQIRSIITNFQTH----QGESSVVD 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWPTT 145
            VDH+ PHKIDENMWKNREHIEEIIF+L    WPTT
Sbjct: 61  EVDHEAPHKIDENMWKNREHIEEIIFLLDRTHWPTT 92
[Close]
BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Match: W9SK94_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022756 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.200e-30
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 1 

		  

Query: 50  ASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVDG 109
           ASTEGLVPITRA+LSSYYD YPF PLSDDV+ L++++RSF  D+    P  QGE L++D 
Sbjct: 67  ASTEGLVPITRAFLSSYYDKYPFSPLSDDVSRLSSEIRSFANDVIADIPPNQGEKLLLDE 126

Query: 110 VDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
            D +PPHKIDENMWKNREHIEEIIF+L+ P WP
Sbjct: 127 ADCRPPHKIDENMWKNREHIEEIIFLLESPHWP 159
[Close]
BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Match: A0A061EE33_THECC (Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_017739 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.100e-30
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITR +L+SYYD YPF+PLSDDV+ L+ ++RSF  DL    P TQGESL++ 
Sbjct: 1   MASTEGLVPITRTFLASYYDKYPFDPLSDDVSRLSFEIRSFAQDLLQGLPPTQGESLLIQ 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
             D QPPHKIDENMWKNREHIEEI+F+L+   WP
Sbjct: 61  EADSQPPHKIDENMWKNREHIEEILFLLERSHWP 94
[Close]
BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Match: A0A061EDZ7_THECC (Uncharacterized protein isoform 5 OS=Theobroma cacao GN=TCM_017739 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.100e-30
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGLVPITR +L+SYYD YPF+PLSDDV+ L+ ++RSF  DL    P TQGESL++ 
Sbjct: 1   MASTEGLVPITRTFLASYYDKYPFDPLSDDVSRLSFEIRSFAQDLLQGLPPTQGESLLIQ 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
             D QPPHKIDENMWKNREHIEEI+F+L+   WP
Sbjct: 61  EADSQPPHKIDENMWKNREHIEEILFLLERSHWP 94
[Close]
BLAST of Spo23102.1 vs. TAIR (Arabidopsis)
Match: AT5G01010.2 (EXPRESSED IN: 23 plant structures)

HSP 1 Score: 134.4 bits (337), Expect = 5.800e-32
Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = 1 

		  

Query: 49  MASTEGLVPITRAYLSSYYDNYPFEPLSDDVATLTTDMRSFITDLQTHTPLTQGESLVVD 108
           MASTEGL+PITRA+L+SYYD YPF PLSDDV+ L++DM S I  L   +P +QGE+ ++D
Sbjct: 1   MASTEGLMPITRAFLASYYDKYPFSPLSDDVSRLSSDMASLIKLLTVQSPPSQGETSLID 60

Query: 109 GVDHQPPHKIDENMWKNREHIEEIIFMLQPPQWP 143
             + QPPHKIDENMWKNRE +EEI+F+L P +WP
Sbjct: 61  EANRQPPHKIDENMWKNREQMEEILFLLSPSRWP 94
The following BLAST results are available for this feature:
BLAST of Spo23102.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902169580|gb|KNA07680.1|8.9e-5197.9hypothetical protein SOVF_1696... [more]
gi|731325318|ref|XP_010673452.1|7.1e-3273.9PREDICTED: uncharacterized pro... [more]
gi|703162360|ref|XP_010113031.1|1.7e-3068.8hypothetical protein L484_0227... [more]
gi|590648752|ref|XP_007032239.1|3.0e-3068.0Uncharacterized protein isofor... [more]
gi|590648755|ref|XP_007032240.1|3.0e-3068.0Uncharacterized protein isofor... [more]
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BLAST of Spo23102.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QKA3_SPIOL6.2e-5197.9Uncharacterized protein OS=Spi... [more]
A0A0J8CLC7_BETVU4.9e-3273.9Uncharacterized protein OS=Bet... [more]
W9SK94_9ROSA1.2e-3068.8Uncharacterized protein OS=Mor... [more]
A0A061EE33_THECC2.1e-3068.0Uncharacterized protein isofor... [more]
A0A061EDZ7_THECC2.1e-3068.0Uncharacterized protein isofor... [more]
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BLAST of Spo23102.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23102.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G01010.25.8e-3263.8EXPRESSED IN: 23 plant structu... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0006452 translational frameshifting
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0006810 transport
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0016246 RNA interference
biological_process GO:0009611 response to wounding
biological_process GO:0009744 response to sucrose
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0048571 long-day photoperiodism
biological_process GO:0042742 defense response to bacterium
biological_process GO:0048825 cotyledon development
biological_process GO:0030001 metal ion transport
biological_process GO:0009867 jasmonic acid mediated signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000932 P-body
cellular_component GO:0005829 cytosol
cellular_component GO:0005618 cell wall
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
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