Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTAGCTCAGTGGCTCACCGGCTCACCCAGTCTGAAACTCTCAACTATCAACAGTTTGTTGTTCTTGTTTCTAAATTCTAATGCGAAGGATAAACCTTTTTCTCAATTCCCAAAACCCTTGAACACTAGAATAGTGAAGGAGAAGCACGAAGATGAGCTTCACAATACACAACAATTCTTCCTCCGTTACTCTTTCAAGCTTACCTTCATCTTCTTCCTCTCAATTCCACACCAAATACATATTCTCTCGCAACCCCAAAACATCTTTTCTCTCTCTTCCACGTGTCCCTATCTCCCACTCCGTCCTATGCCTCGCCCGCCGTCGCAGCAACTCCGGCCGCCCCGCCACCGCCTCTTCCAAGAAAAATAAGGTTTTATTTTTGGTTTCTGTTTAATTTTATCCATTTATATAATCAGAAATTAGTCTTGCATAGTTTGGCCATGAATTTGGGGATTTTGCAGTTTATTGTTGAAATTACCTTAGTTTATTAGTGACACATTTGCTACTTCATTTTAGTTGGGGTTTGTTACATTATCTTCATTTGTGGCCTATGTCTTAATACTCATAACGATACCTGTGTGTCTGATGCTCAACACTCGAACAGGTGACAACTAGTCACGTTCATTTTGATTAAAATTGTGCAGAAGTTTCAAAAGGAGACGACCTTGTTTGACACTTTTAGCCGAGATGGAGTCATGTAGATATTGCTTGGGAATTTGGATGTGATTCTTTCATTTTAGACCAAAATCATGCAAACAAAAGGCAAATTTGTTAAAAAGGACCTTTTATAACCCAAATTTTGCGAGAAAGGACCTTATATAATTTTTTTTGTGAAATCACACCTTAATGTAAATTTTTTTGCGAGAAAGGACCTTATATAATTTTTTTTGGTGAAATCACACCTTAATGTACTTTTTTTTTGCGAAAGACAACCAAAAGTAAATTTTCGGCATTGACTGAGCTTTTCCGGCCATTGACTTGCACGTGAGAAGCACGTGTGGCTTTATTTTGCTAATTACACCCAATTTTCCTCCAAAATTCTAAGATTTAAAACCTAAAGTTGAAAAAAAAGTCGAAATAAAATCAAGTTTGAAAATTCAACTCGGGAAAATCAATGTCTTTAGCCAACGTAAGCCACGCGTGCTGCTCACGTGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACAAAATTCACAAGAGTGCCCGTGTTTGACACTTCAAGCTGAGTCCGATAAACATAGGTTTCGCCAGGAATTTTGAATGTGTTTCTATTTATTTAAAATCTTCGCTGATGGTTTGATAAGAGAGGTTTTACATGTAAAAACTTAGCTAACAGGGAGTCCGCCAATTTTCCCTCTTGGAGGAGATAGAGATATATGTTGTATCTTCCCTGTATTATGCAATTCGGTCGTATAGCTTGTTGGGATACATATAGGGGAAGTTTAATATGACAAGGTGCTCACTTTAGTGGCTCGTTATTGGTTATCGCCTACGTGCCTATTAGGTTTGTGGTTTACCCCGAACACTAAAATTACAGTAATGCAAATCCCTCTTTAGATGCTTTTGCTATCTCTTGAATTGTAGACTTGTTTTGTGTAGCGCATTTGCACAAAGTTGTCTTGCAATCCATTAACAATTGTTGGGTTTGCAAAATGTATATTCCTTATACTTATGTATTGAGGAAGGATCAATCTAATTGACTTGATAGTGGTATGCGTGTTTCATCTCCTATGATTTCCTTTGTTTTTGCCATGCTTTTTTTTCTTTCTAATGAGACTAGAGTATAAGAGATACATTTACATTGTACAATGCAACAGGATGATTTCTTCTTGTTGCTTGCAGGGCCGCAAGAAAGAGGACTCTAATAAAGGTGATGACTTGGATGGTGATGCTTTCGAGGCTCTATTTAAGCTACTTGAAGAAGATCTCAAGCAAGATGAGGAGTTGTTAGGTGATGGCGATAATGAGATTTCTGAAGAAGAGCTTGCCCTGCTCGAACGTGAGTTAGAAGAAGCACTAGCAGAAGATGAAAATATGTCAGCGCTGTTGAGTCTGACTGCAAAGGATGCCGTAGAAGGAAAAGGCGCTGAAGAAGAAACGAAAAATGAAGTTGGAGAAGATGGTGTTGGTGTTGGTGTTGATGATGATGATGATGATGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAACCAGTACAACTGAAAGGTTGGCAACTTCGGCGATTAGCACAAGCACTGAAGGTTGGCCGCCGTAAAACTAGTGTAAGTCATATTCTCTTTGTCACTGAAACTATTTGTTTTCGACTCATAATCAGTGTCCAAGAGCTCCTTGCGAGATTTCATTTCTAA CTAGCTCAGTGGCTCACCGGCTCACCCAGTCTGAAACTCTCAACTATCAACAGTTTGTTGTTCTTGTTTCTAAATTCTAATGCGAAGGATAAACCTTTTTCTCAATTCCCAAAACCCTTGAACACTAGAATAGTGAAGGAGAAGCACGAAGATGAGCTTCACAATACACAACAATTCTTCCTCCGTTACTCTTTCAAGCTTACCTTCATCTTCTTCCTCTCAATTCCACACCAAATACATATTCTCTCGCAACCCCAAAACATCTTTTCTCTCTCTTCCACGTGTCCCTATCTCCCACTCCGTCCTATGCCTCGCCCGCCGTCGCAGCAACTCCGGCCGCCCCGCCACCGCCTCTTCCAAGAAAAATAAGGGCCGCAAGAAAGAGGACTCTAATAAAGGTGATGACTTGGATGGTGATGCTTTCGAGGCTCTATTTAAGCTACTTGAAGAAGATCTCAAGCAAGATGAGGAGTTGTTAGGTGATGGCGATAATGAGATTTCTGAAGAAGAGCTTGCCCTGCTCGAACGTGAGTTAGAAGAAGCACTAGCAGAAGATGAAAATATGTCAGCGCTGTTGAGTCTGACTGCAAAGGATGCCGTAGAAGGAAAAGGCGCTGAAGAAGAAACGAAAAATGAAGTTGGAGAAGATGGTGTTGGTGTTGGTGTTGATGATGATGATGATGATGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAACCAGTACAACTGAAAGGTTGGCAACTTCGGCGATTAGCACAAGCACTGAAGGTTGGCCGCCGTAAAACTAGTGTAAGTCATATTCTCTTTGTCACTGAAACTATTTGTTTTCGACTCATAATCAGTGTCCAAGAGCTCCTTGCGAGATTTCATTTCTAA ATGAGCTTCACAATACACAACAATTCTTCCTCCGTTACTCTTTCAAGCTTACCTTCATCTTCTTCCTCTCAATTCCACACCAAATACATATTCTCTCGCAACCCCAAAACATCTTTTCTCTCTCTTCCACGTGTCCCTATCTCCCACTCCGTCCTATGCCTCGCCCGCCGTCGCAGCAACTCCGGCCGCCCCGCCACCGCCTCTTCCAAGAAAAATAAGGGCCGCAAGAAAGAGGACTCTAATAAAGGTGATGACTTGGATGGTGATGCTTTCGAGGCTCTATTTAAGCTACTTGAAGAAGATCTCAAGCAAGATGAGGAGTTGTTAGGTGATGGCGATAATGAGATTTCTGAAGAAGAGCTTGCCCTGCTCGAACGTGAGTTAGAAGAAGCACTAGCAGAAGATGAAAATATGTCAGCGCTGTTGAGTCTGACTGCAAAGGATGCCGTAGAAGGAAAAGGCGCTGAAGAAGAAACGAAAAATGAAGTTGGAGAAGATGGTGTTGGTGTTGGTGTTGATGATGATGATGATGATGATGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAACCAGTACAACTGAAAGGTTGGCAACTTCGGCGATTAGCACAAGCACTGAAGGTTGGCCGCCGTAAAACTAGTGTAAGTCATATTCTCTTTGTCACTGAAACTATTTGTTTTCGACTCATAATCAGTGTCCAAGAGCTCCTTGCGAGATTTCATTTCTAA MSFTIHNNSSSVTLSSLPSSSSSQFHTKYIFSRNPKTSFLSLPRVPISHSVLCLARRRSNSGRPATASSKKNKGRKKEDSNKGDDLDGDAFEALFKLLEEDLKQDEELLGDGDNEISEEELALLERELEEALAEDENMSALLSLTAKDAVEGKGAEEETKNEVGEDGVGVGVDDDDDDDEEEEEEEEEEEPVQLKGWQLRRLAQALKVGRRKTSVSHILFVTETICFRLIISVQELLARFHF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05152.1 vs. NCBI nr
Match: gi|902208688|gb|KNA16012.1| (hypothetical protein SOVF_093040 [Spinacia oleracea]) HSP 1 Score: 379.0 bits (972), Expect = 6.100e-102 Identity = 211/218 (96.79%), Postives = 217/218 (99.54%), Query Frame = 1
BLAST of Spo05152.1 vs. NCBI nr
Match: gi|731320152|ref|XP_010670653.1| (PREDICTED: uncharacterized protein LOC104887662 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 229.9 bits (585), Expect = 4.600e-57 Identity = 140/214 (65.42%), Postives = 165/214 (77.10%), Query Frame = 1
BLAST of Spo05152.1 vs. NCBI nr
Match: gi|731385823|ref|XP_010648647.1| (PREDICTED: retrotransposon-like protein 1 [Vitis vinifera]) HSP 1 Score: 129.0 bits (323), Expect = 1.100e-26 Identity = 96/211 (45.50%), Postives = 129/211 (61.14%), Query Frame = 1
BLAST of Spo05152.1 vs. NCBI nr
Match: gi|719981127|ref|XP_010250031.1| (PREDICTED: retrotransposon-like protein 1 [Nelumbo nucifera]) HSP 1 Score: 115.9 bits (289), Expect = 9.600e-23 Identity = 90/217 (41.47%), Postives = 131/217 (60.37%), Query Frame = 1
BLAST of Spo05152.1 vs. NCBI nr
Match: gi|296082012|emb|CBI21017.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 115.5 bits (288), Expect = 1.300e-22 Identity = 90/211 (42.65%), Postives = 118/211 (55.92%), Query Frame = 1
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RB51_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093040 PE=4 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 4.200e-102 Identity = 211/218 (96.79%), Postives = 217/218 (99.54%), Query Frame = 1
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSQ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g042870 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 3.200e-57 Identity = 140/214 (65.42%), Postives = 165/214 (77.10%), Query Frame = 1
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Match: F6H309_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05190 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.100e-25 Identity = 93/211 (44.08%), Postives = 123/211 (58.29%), Query Frame = 1
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Match: A0A067KMV7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07186 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.100e-22 Identity = 90/218 (41.28%), Postives = 135/218 (61.93%), Query Frame = 1
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Match: B9HA31_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26790g PE=4 SV=2) HSP 1 Score: 110.2 bits (274), Expect = 3.700e-21 Identity = 90/221 (40.72%), Postives = 129/221 (58.37%), Query Frame = 1
BLAST of Spo05152.1 vs. ExPASy Swiss-Prot
Match: OCP3_ARATH (Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 OS=Arabidopsis thaliana GN=OCP3 PE=1 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 1.000e-16 Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 1
BLAST of Spo05152.1 vs. TAIR (Arabidopsis)
Match: AT5G11270.1 (overexpressor of cationic peroxidase 3) HSP 1 Score: 88.6 bits (218), Expect = 5.800e-18 Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05152.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05152.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05152.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo05152.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
|