Spo12589 (gene) | SpinachBase

Overview


Name	Spo12589
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_02449 : 33259 .. 36046 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTTTGCATATCCATGGAATTTTGTTTCTTCTTAATTGAAGATTATAGTATTTATAAGCTCTATATATGCAGCAGAATCTGGTTCATCAGCTTCTGGATCAGATCATATAGCCATGATGGAGGATTACATGAAGAAAGTACTAGCGGAAGAGAGGAAAAGACCCTCAAACAATCACGAGATGAAATGCCTCCCCCAGCTTCTGTTCAAGTTCAAGGTTAATTTCTATATTTTTGGAAGGAAAATAGAAATTAGCTTCACTATTACTATGCGTATGTTCTAATTATCTTTGTGTATGTTCTATTTATCTTTGTGTATGTTCTATATAAAACATGCATTGTTTTTCTTGAATATTTTGTTAAAAACCTATTAGCTCAAATGGTAGAGCAATGTGTCATTGCACATGGATATAGGTTCAAATCCTACATAGGTTGTTGAGAACACACAACTTAGCTCCAATGTATTTATAGGGATAGGTCCTATGTAGTGTCACAACTGAACCCACCGAGTCGTGGAGGTGATAACGCGGTAGCCATTACAGTTGGAAATACCGGTAGTTTTAGTAACATGCTAGTTTCGAACTCAACTCAACTTATAGATACTTTTTGGTTGTTTGAGCTTGTAGTTTGTTGCAAGGCCGAAGTGTTTTTTATTTGATCTTGTAGCTTAAGTTTTATATAATTTTAGTTACATTTTAAGCCTTTTTCAGTTTTTGTCCATGTTCTAAAAAGTCAAGTCTTGTGTTCTAAATTTTGTTGCATATGTTCCAAAACTTAAGAGAAATGATAATTCACATTTCAATAATAATAAAAATGCAACTATTGAAATAATTAACCTCTTTTCTTTTAAAAGTTGAAATATAATGCAATTCAAAATTTCCAATTAAGCGTTGCTTATGTTTTAAATCTTTGTGACTTCATGTTCTAAAAACTAAGTCCAATGTTCTAAAAATTTATACATATGTTCTAAAGTAAATAAAACTGATTCAAAAATAAAGAATCATCAAATAGAAGAATTAACATCATAAACGCAATACAAAGAACGAGTTGCCTATGTAGGATTCGAACCTACATCATTGTGCAATTGCACAAAGCTCTACCAATTGAGCTAATAGGCATTACTTGCATGTTTGGTACACCTCAAAAGATAGTGGTTTTTCAACGGTAGGCTAGGCGCAGGGCGTTTCAGCTTCAAGCAATCTATTGGATAATGAGGGTATGGAAGGAAAAGGGGACCTGAGGGAAGGTAAGGCGTACAACATGAAGAGGGGGAGAGAGAAGGGGAGTGCCTTCGCACCAAAAACATGGTCACGTGATATGCTAGACTATTAGACCAGAGGCGAAACTATCTTAAGTTTGGTCTAGGGGTAATTGAATAATGCATCTGCCCATCAACGCTGAAGCAAGGCTGCATCAATAAACTCTCAAAAGATACACGACCAGACTGATGGCATTGAAAAAAACTCATACAACCATGAAGGCAAAAAATACTAAACACTGAAACAAGATTTCCAAAATAAGAACAGGAAAGGGACCTCTGGTACCATAAAAAAGAACAACACTTTATAAGGAGTGTCAAATTTTACAGAATACCTCAACTATCTGATCAACAACGTCAACCAACAAAATTCACCACTTTTGGACCTTGCTTCTTCTTTACCTTCGCGTGATTCTGGTTTTTCTCAGATGCTGGATCACTTTCAGAATTCTTAGAGTCGTCCTCCATCATGAAGTCATCCTCAAGATCGTCCCCACTATATCTTAGTAACATTTGATTGCGACTGCTCTAGTGTAGATACTGAAGAAATATGAAGCAACATCAAAATTTAGAAGTTGTGGTGGGATGATGCAGATGAACATCGCAGAAAAAATGAATTTTTTTTTGAAATCTTAAATTAGCAAAACAAGGTGTAGTTCTCACCATCAATCTATCAGGAGCACAAACACTAGCAAGCACGTCGACGTGTGTGTAGAGAGATTAAGAGAGAAAGCGAGAAAGGGAAGCATTGAGAACAGTTAGGCGAGCCCATGATGACCTGCTACAAAACTGCAATCATATTATTCTGTGTTAGAATTTCATCAGGGGAACTTTATCATAACTAACCAATCTGATTTTTTTCTGTGTTATGGGTTTGACCGTCTGCTTCTTGGGCTTATGCTCTTGATGGTGGACCAGTAGGAAACTCCCTAGCACCACTTGATCATTTGAGGAGAGAGAAATATGAGTCTATTTTTGTATTCAAACACATCAAATTAAATAAATATGACCCTGAAGTATGTTCTAAATTTTAATCCTTATGTTCTAAAGAATAAACTATTATGTTCTAAAAAATAAACTATTATGGTCGAAAAAGTGCTTCTGCTAACGCTACATGTTTGAATTTTACAGGGAAAAACAACAGGATGTCATTAATGCAATGGGATCTCTATAGACAGCAACACTTTTCATCGGAATTACCAATTCTGCCGCAGTTATGCCTGTTGTTTCCACTGAAAGATTTGTTTCCTACAGAGAGAGAGAGCTGCAGGGATGTATTCAGCTTCTACCATTTGCCTTTGCACAAGTTTCTCTTCCTACTTTCTTTGTCTTTTATTTGATACCAAAAAGAGAACCGGAATCATTGATCTATATACGCATTCAAATTGCACGCCTTGCTTTATTTAAAGCTAACTCAATTAAATTAGAACATCACGTTATATAATTTAGAACATCATGTTATATAATTTAGAACATACAAATATCCAGAATTTTATTTCATTTAATTACAGAAACTCTCTAAAAATTT

mRNA sequence

ATGAATGTTTGCATATCCATGGAATTTTGTTTCTTCTTAATTGAAGATTATAGTATTTATAAGCTCTATATATGCAGCAGAATCTGGTTCATCAGCTTCTGGATCAGATCATATAGCCATGATGGAGGATTACATGAAGAAAGTACTAGCGGAAGAGAGGAAAAGACCCTCAAACAATCACGAGATGAAATGCCTCCCCCAGCTTCTGTTCAAGTTCAAGGGAAAAACAACAGGATGTCATTAATGCAATGGGATCTCTATAGACAGCAACACTTTTCATCGGAATTACCAATTCTGCCGCAGTTATGCCTGTTGTTTCCACTGAAAGATTTGTTTCCTACAGAGAGAGAGAGCTGCAGGGATGTATTCAGCTTCTACCATTTGCCTTTGCACAAGTTTCTCTTCCTACTTTCTTTGTCTTTTATTTGATACCAAAAAGAGAACCGGAATCATTGATCTATATACGCATTCAAATTGCACGCCTTGCTTTATTTAAAGCTAACTCAATTAAATTAGAACATCACGTTATATAATTTAGAACATCATGTTATATAATTTAGAACATACAAATATCCAGAATTTTATTTCATTTAATTACAGAAACTCTCTAAAAATTT

Coding sequence (CDS)

ATGAATGTTTGCATATCCATGGAATTTTGTTTCTTCTTAATTGAAGATTATAGTATTTATAAGCTCTATATATGCAGCAGAATCTGGTTCATCAGCTTCTGGATCAGATCATATAGCCATGATGGAGGATTACATGAAGAAAGTACTAGCGGAAGAGAGGAAAAGACCCTCAAACAATCACGAGATGAAATGCCTCCCCCAGCTTCTGTTCAAGTTCAAGGGAAAAACAACAGGATGTCATTAATGCAATGGGATCTCTATAGACAGCAACACTTTTCATCGGAATTACCAATTCTGCCGCAGTTATGCCTGTTGTTTCCACTGAAAGATTTGTTTCCTACAGAGAGAGAGAGCTGCAGGGATGTATTCAGCTTCTACCATTTGCCTTTGCACAAGTTTCTCTTCCTACTTTCTTTGTCTTTTATTTGA

Protein sequence

MNVCISMEFCFFLIEDYSIYKLYICSRIWFISFWIRSYSHDGGLHEESTSGREEKTLKQSRDEMPPPASVQVQGKNNRMSLMQWDLYRQQHFSSELPILPQLCLLFPLKDLFPTERESCRDVFSFYHLPLHKFLFLLSLSFI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12589.1	Spo12589.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo12589.1 vs. NCBI nr
BLAST of Spo12589.1 vs. UniProtKB/TrEMBL
BLAST of Spo12589.1 vs. ExPASy Swiss-Prot
BLAST of Spo12589.1 vs. TAIR (Arabidopsis)

BLAST of Spo12589.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12589.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12589.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12589.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006810	transport
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009744	response to sucrose
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009637	response to blue light
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0030091	protein repair
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0061025	membrane fusion
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
biological_process	GO:0010200	response to chitin
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0043069	negative regulation of programmed cell death
biological_process	GO:0052542	defense response by callose deposition
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0007205	protein kinase C-activating G-protein coupled receptor signaling pathway
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0046497	nicotinate nucleotide metabolic process
biological_process	GO:0006769	nicotinamide metabolic process
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0032940	secretion by cell
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019048	modulation by virus of host morphology or physiology
biological_process	GO:0009630	gravitropism
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0009555	pollen development
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0042398	cellular modified amino acid biosynthetic process
biological_process	GO:0009698	phenylpropanoid metabolic process
biological_process	GO:0006598	polyamine catabolic process
biological_process	GO:0048767	root hair elongation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005768	endosome
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0019003	GDP binding
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003951	NAD+ kinase activity
molecular_function	GO:0004143	diacylglycerol kinase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17209	0.74	Barchart \| Table
Spo14667	0.74	Barchart \| Table
Spo00748	0.74	Barchart \| Table
Spo11509	0.73	Barchart \| Table
Spo13210	0.73	Barchart \| Table
Spo00283	0.72	Barchart \| Table
Spo02513	0.72	Barchart \| Table
Spo19217	0.71	Barchart \| Table
Spo02065	0.71	Barchart \| Table
Spo05781	0.71	Barchart \| Table
Spo21833	0.70	Barchart \| Table
Spo01801	0.70	Barchart \| Table
Spo09769	0.70	Barchart \| Table
Spo16996	0.70	Barchart \| Table
Spo11961	0.70	Barchart \| Table
Spo06004	0.70	Barchart \| Table
Spo16804	0.70	Barchart \| Table
Spo13905	0.70	Barchart \| Table
Spo23286	0.69	Barchart \| Table
Spo11524	0.69	Barchart \| Table
Spo25653	0.69	Barchart \| Table
Spo03195	0.69	Barchart \| Table
Spo09499	0.69	Barchart \| Table
Spo20770	0.68	Barchart \| Table
Spo14630	0.68	Barchart \| Table
Spo14942	0.68	Barchart \| Table
Spo17445	0.68	Barchart \| Table
Spo15222	0.68	Barchart \| Table
Spo00872	0.68	Barchart \| Table
Spo04104	0.68	Barchart \| Table
Spo05135	0.68	Barchart \| Table
Spo05928	0.68	Barchart \| Table
Spo01437	0.68	Barchart \| Table
Spo08114	0.68	Barchart \| Table
Spo23712	0.68	Barchart \| Table
Spo20912	0.68	Barchart \| Table
Spo10444	0.68	Barchart \| Table
Spo10864	0.68	Barchart \| Table
Spo10895	0.68	Barchart \| Table
Spo11951	0.68	Barchart \| Table
Spo19245	0.68	Barchart \| Table
Spo20544	0.68	Barchart \| Table
Spo08435	0.67	Barchart \| Table
Spo01352	0.67	Barchart \| Table
Spo03630	0.67	Barchart \| Table
Spo04082	0.67	Barchart \| Table
Spo05402	0.67	Barchart \| Table
Spo06335	0.67	Barchart \| Table
Spo09636	0.67	Barchart \| Table
Spo10316	0.67	Barchart \| Table
Spo12954	0.67	Barchart \| Table
Spo13518	0.67	Barchart \| Table
Spo15873	0.67	Barchart \| Table
Spo16801	0.67	Barchart \| Table
Spo23382	0.67	Barchart \| Table
Spo23772	0.67	Barchart \| Table
Spo24068	0.67	Barchart \| Table
Spo26430	0.67	Barchart \| Table
Spo15084	0.66	Barchart \| Table
Spo14779	0.66	Barchart \| Table
Spo27081	0.66	Barchart \| Table
Spo26858	0.66	Barchart \| Table
Spo24736	0.66	Barchart \| Table
Spo25230	0.66	Barchart \| Table
Spo00667	0.66	Barchart \| Table
Spo15630	0.66	Barchart \| Table
Spo15499	0.66	Barchart \| Table
Spo15461	0.66	Barchart \| Table
Spo13783	0.66	Barchart \| Table
Spo20952	0.66	Barchart \| Table
Spo22396	0.66	Barchart \| Table
Spo22436	0.66	Barchart \| Table
Spo22811	0.66	Barchart \| Table
Spo26013	0.66	Barchart \| Table
Spo23675	0.66	Barchart \| Table
Spo08521	0.66	Barchart \| Table
Spo13912	0.65	Barchart \| Table
Spo20187	0.65	Barchart \| Table
Spo16339	0.65	Barchart \| Table
Spo12376	0.65	Barchart \| Table
Spo09752	0.65	Barchart \| Table
Spo09141	0.65	Barchart \| Table
Spo21660	0.65	Barchart \| Table
Spo09335	0.65	Barchart \| Table