Spo11455 (gene)

Overview
NameSpo11455
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02467 : 33578 .. 34062 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAAGTGGAGTGATGGAGAAGCTTCAACTGCTCTCAGATACTACTGCTTGTACAGTACATTACATATCTGACGCTGAATGGTTAGTGACATATAAGTTTCTACAATGTGAATTTTTCTATACCCTCGCTGGAAGTTAGGATATGAGCAATATATGGTATCCCGACTATCATGTTTTACTTGTGCAGGCACCATTTAAAAATGGAAATGTATATCAGTTGGCCTATTTCAACAGTTTCACCTTCATTTGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCTGCGTTTTGATGCTCTCCTACATACTGATTTGCATGATCATTAAGAACCCAACAGGCTGGAAAGAAGGGGGTTGCATCATTTTTTTCTTCCTTTCCATTTTTTAAACCTAGTAGTAACTTGTAAAATTTACGTTGTTTTTCAATATATTTAATTAATGCCTGTTTATGCAAAAAAAATA

mRNA sequence

ATGGACAAAAGTGGAGTGATGGAGAAGCTTCAACTGCTCTCAGATACTACTGCTTGTACAGTACATTACATATCTGACGCTGAATGGCACCATTTAAAAATGGAAATGTATATCAGTTGGCCTATTTCAACAGTTTCACCTTCATTTGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCTGCGTTTTGATGCTCTCCTACATACTGATTTGCATGATCATTAAGAACCCAACAGGCTGGAAAGAAGGGGGTTGCATCATTTTTTTCTTCCTTTCCATTTTTTAAACCTAGTAGTAACTTGTAAAATTTACGTTGTTTTTCAATATATTTAATTAATGCCTGTTTATGCAAAAAAAATA

Coding sequence (CDS)

ATGGACAAAAGTGGAGTGATGGAGAAGCTTCAACTGCTCTCAGATACTACTGCTTGTACAGTACATTACATATCTGACGCTGAATGGCACCATTTAAAAATGGAAATGTATATCAGTTGGCCTATTTCAACAGTTTCACCTTCATTTGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCTGCGTTTTGA

Protein sequence

MDKSGVMEKLQLLSDTTACTVHYISDAEWHHLKMEMYISWPISTVSPSFAQTPECNQAEVSPVARTPAF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo11455.1Spo11455.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo11455.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11455.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11455.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11455.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0055085 transmembrane transport
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0030001 metal ion transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0000786 nucleosome
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression