Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCAGATTATATTGTTCTCCTCTTGACAACCATAATGAAGCTACGTAAGCAAGTTATCGGTACCATCGTTTGCCATTTACTTCTATACGGTAGGCTCTCTTCTCTTCCTTTTGGCCTTTTAACAAAATTTATTTATTGTTCAACCTATTCTAAGGGATTATGAGAATCCAAAAAGTAATTACCTTAGAATTTGCCACACATTTGCTCAAACCTATTATTTTCTTACACGACTCCACTCAACCTAATTTTTTATTATTTGTTTCTTACTACATCCCACTTTCCATACTTATTCCTCACTTTCTATCATTTATCTTAATTGTTGCGAAATGTATTGACGGGGCATTAATTAATTACCTTAAGTTGCAGGAGTAAGTGGACACATAGTACTTATAGTGGTGACCAACAAATGCCCTTTCACAATATGGCCAGCAACAGCCCCTAACACAGGCCATCCGATGATAGCCAATGGTGGGTTCTGCCTAAAATCCGAGCAGTCATCACAAATAAACACTCCATGGGACTGGAGCGGCCGCATCTGGGCACGAACCGGGTGCAACTTCAAGGAAGATAGCGGAGACAACAACATCACAAACAACCCAACATGGAGACCTGCTTGTCAAACAGGGGACTGTGACGGGAGCCTCGAGTGCAATGGACTCATAGGAAAACCCCCAGCAACATTAGTTGAACTCACATTTCAAACAGATAAAAACCAACCAAGCTTCTACGACATTAGTCTCGTGGACGGGTACAACCTGCCTGTCTCCGTCATTGCCGGGCGGTCACCCAAATGCGCCATAAGAGGATGCTTGAGAGATATAAAAGAGATTTGTCCCTTAGAGTTGCAAGTAAATGATGGAAGAGGGAATGTTGTTGCTTGTAAGAGTGCTTGTCTTGCGTTCGATTGGGATGGATTTTGTTGCAGGAACGAGTATGGGAGCCCTGAAAAGTGTAGGCCAAGCTTGTATTCGACTGTTTTTAAGAGCGCTTGTCCGTCTTATGTTAGTTATGCTTATGATTCTCCTTCGCCTTTGGTGAGTTGTTTGGTGAAGGAGCTTTATATTACCTTCTGTCCTGCGGGATGGGGTCATAGTCTACAACGATATGTTTCTAATTTACTACATTAGTACATGTATGACTACATTAGTACATGTATGACGAATGAATAATTGTACACCCTTTCTCTTGCGTACATATATGTGTGCGGAAATATATATAAAAGAAAACCAAAAATTATGTTAAGTAAAAAAAATTATTCGTAAAGTTTCTCTAGAAAAAGTAGACCATCAAAATAATTTGGGGAGATATTTTTTATTATGAAGTATATTTGTTTAAAAAATTTAAATTTAAATCTAATAATACACACACCCCCTTAAGATGAGAACTGAGAACTAATCTCAGTCGTCGATCAAATCAATCTAACAGCTCATATTTCACCCGCTCAAATCAATCATTAAGGGTATTTTGGTAAATACTCGGCGTTGAATGACCTCCTTCCCACACAATAGTGATTCCCATAATTCTTTCTCTCTCTTCATTCAATTTTCTCTCTCCTCCTGCAAATCCTCTCTACTATCGGGCTTCATCTTCTTCAACTTCGTACGTTGTTTCTCGTTGTTCTTGCAAATATCTTCACCTTTTTTTACGACTCTCTTCCAATTATTTTGCCAGGTACGTATTTGATTTTTTGGATTTTGTTTCAATTTTTGCTATTTTAATTTCTCTCTCTACATTCAATTAGTATGCCGTTGTTCTTCGATTTTGCTGATTATTATTTTTATGTTCATGTATTTGATTTGTATACAATTAGGTTTTCGAATAATGTTTTGTTCCCTTATTCATGTTCCTGATCTTGTTTTGTTGATATTTTTGACCGATTTTACAAATTAGGGTTTGAATTAGTTTTTGTTTGTTTGTTTAATTCCGTTTAATTATTGTTTTCTATTGATTAAGTTTTGCATTATTCAAATCTCATGTATATTTGTGAGAGCAAGAATTGAGTCATCTTAGCACCACTTTAGAGCCAATGAAGATCTGATATTAAAAAAAGGGAGGATTTCTTGTATGTTTAAAACCATAAAGAATTTTATGTTTTACTTTGAGTTAGTTTGCTGAGGTCTTGTACATGTTCTGTCTGCAGTATGGGTCAGGCAAGTTCTGCAGATTGTGTGCATTTCATGTTCTTTCGGAGGCAGTTGATGGTATTCAGATGGTGATGAACATTTAGTGAAATCTTTTTGAAATTTGTAGTGATAACAGATGGATGCTCCCAGCTCTGCGAGTTTTATTTACGCTGTTGTACGTTGTCTTTAGTTATTGTAGTTATCTGTCAGGAATCAGTGACAATGCAGACTAGAGAAGTATATCAGGTCATTTCATCATACTTTACCGAAGGCCAGTTTATGAATATATAGACAGGTTTGGTTGGTGATACTCGAATATAAGTTAACTGTTGGAATCAACGAAGTTAACAATTAACATGAATGCCTAAATGGCCATTTGAATCATATCTGATACGAGCCCAAAATTAACCCACTTTTGTGACACCTTTTTAGGAGTCGATAGAGTATCTCGAGAAAGTTAGAGGACAGTCTTCTTGGATTGCTCAACAATTATGAGACTGAGATGACTTGAAACAATAGTATTTCCCACTTACGAAGGCAGTAACTCATGCCAAAGATCATTTTGGGTGAAAATCTTGAATTAAGCTGGCATGATGCTTAATTTCTTACCATAGGTAAGTAGGTAACCTCCCTGGCATGAGGCTTTCTAGCCCCTAGGTAAGTGGTAACCTCTCCTGATACAGGGTGAATAATTGTCTTCCTCCACTCTATAGTAATAGGTATGCTAAAAGCTTAACAGGAAAATTATGTTTGGAAGGAGAGTGTACTAACTAAGTTTCTGTACTATTTTCAAACACCGCCAAATATAACTAGTCAAATCTATTATTTAGAATCTAATGATTCTAATCTGCTCTTTTCCTCTAATGTGCTTTTTCCAAACACCCTGAATATAAAATTATGCATATCAAGGTCTTGAAGGTGTTGAGATTGTAGTGATCTTTCTGTCTAACTATTATTATTATTTGCTTGTTCCAGGGACAAAAATTAGATGTTATCAGCTATACCCAGAACCGGAGTCAGTTTATTGTGCCTTATGTTTGAGAAAAACTAGTTGCAAAATTTTCCATACATGTATAAAGAGTCTCCCTTTTAACTGGACATGTGCAAGTGACAACGAAAGATGTAGGAACTCTTGGAGAACTGAAAATCACTGATAATTCAAGCTTGATAAGAAGCAGACAGTTCAGATTAGGTCTAAAGGTTGTCTCAGGTTATGGTGAAGGTGTTCGTATTCATGAAGCAAAAACAGAAGCTTTCACCGTCAAGGATCACGGAGGGGAATGTGAGTCAAATTTCTTAAACCTATGTCTTTTTTACAAGATTTATCCCTTTTTTCATTATGTTCTGTTGTTGTTTTGTTCACCTATTAGAATAAAGTCATTTTTATTAAAGCATCGAAATTTGTCAGTGAGTCAAATCCTCTTGTTTGTATGTTGATCTCGTATTTATTTCATGTTACAGGCTAGAGTGAGCATCTTTGGTAAAAGCAGGCGAGTAGTGAGCATTTCCATATCTTTGAGCCTTCTGACACTAAGGACACACAGAAGAAAAGGATCATTCTGGTTATATATTCTTCAGGTTGGATAATAGGCTTCACTGACCCTTTTTTGCCGTCTCCACAAATTTTTGAGTTTTTGTTTTACTTTTATTCATTCTATTTAAAACACTAGCCTACTAGCTCAATTGGTATAGCATTGTGCAAAAGCACAAAAGATGTGGGTTCGAATTGTTAGGTTATGATACATATGAAAAACATAAATCATGCGGAAAAAACCTTAATGCCAGGAAACATATTATTTACACATAATCAGTTAGCATAATTTAGATGCATACACTTTGTAGCGTGCCCTCCCTTGCTGCGCCTGAACCGAACAAGAACAAGTCTTTAGGACTCCAAGTGTCGTCCCTCCGTAGATAGTCCACAACACGTCCGGATCCGCCTTAAGATTGACCAACTAGAATCGCCCTTAAGGTACTATTATTTTCGGCTAAATGGGCAAGTAATGTGACTGATTTTTCTGCTCAAAAATCACAGCTTTTATTGTATGAATACTTGTTAAAAACTCTTGTATAAATTTATGACCCTAGGCATATATTTATAGAATCATGGAAAAGGATTTCGAAT TCTCAGATTATATTGTTCTCCTCTTGACAACCATAATGAAGCTACGTAAGCAAGTTATCGGTACCATCGTTTGCCATTTACTTCTATACGTTGCAGGAGTAAGTGGACACATAGTACTTATAGTGGTGACCAACAAATGCCCTTTCACAATATGGCCAGCAACAGCCCCTAACACAGGCCATCCGATGATAGCCAATGGTGGGTTCTGCCTAAAATCCGAGCAGTCATCACAAATAAACACTCCATGGGACTGGAGCGGCCGCATCTGGGCACGAACCGGGTGCAACTTCAAGGAAGATAGCGGAGACAACAACATCACAAACAACCCAACATGGAGACCTGCTTGTCAAACAGGGGACTGTGACGGGAGCCTCGAGTGCAATGGACTCATAGGAAAACCCCCAGCAACATTAGTTGAACTCACATTTCAAACAGATAAAAACCAACCAAGCTTCTACGACATTAGTCTCGTGGACGGGTACAACCTGCCTGTCTCCGTCATTGCCGGGCGGTCACCCAAATGCGCCATAAGAGGATGCTTGAGAGATATAAAAGAGATTTGTCCCTTAGAGTTGCAAGTAAATGATGGAAGAGGGAATGTTGTTGCTTGTAAGAGTGCTTGTCTTGCGTTCGATTGGGATGGATTTTGTTGCAGGAACGAGTATGGGAGCCCTGAAAAGTGTAGGCCAAGCTTGTATTCGACTGTTTTTAAGAGCGCTTGTCCGTCTTATGTTAGTTATGCTTATGATTCTCCTTCGCCTTTGTATGGGTCAGGCAAGTTCTGCAGATTGTGTGCATTTCATGTTCTTTCGGAGGCAGTTGATGGAACTCTTGGAGAACTGAAAATCACTGATAATTCAAGCTTGATAAGAAGCAGACAGTTCAGATTAGGTCTAAAGGTTGTCTCAGGTTATGGTGAAGGTGTTCGTATTCATGAAGCAAAAACAGAAGCTTTCACCGTCAAGGATCACGGAGGGGAATGCTAGAGTGAGCATCTTTGGTAAAAGCAGGCGAGTAGTGAGCATTTCCATATCTTTGAGCCTTCTGACACTAAGGACACACAGAAGAAAAGGATCATTCTGGTTATATATTCTTCAGGTTGGATAATAGGCTTCACTGACCCTTTTTTGCCGTCTCCACAAATTTTTGAGTTTTTGTTTTACTTTTATTCATTCTATTTAAAACACTAGCCTACTAGCTCAATTGGTATAGCATTGTGCAAAAGCACAAAAGATGTGGGTTCGAATTGTTAGGTTATGATACATATGAAAAACATAAATCATGCGGAAAAAACCTTAATGCCAGGAAACATATTATTTACACATAATCAGTTAGCATAATTTAGATGCATACACTTTGTAGCGTGCCCTCCCTTGCTGCGCCTGAACCGAACAAGAACAAGTCTTTAGGACTCCAAGTGTCGTCCCTCCGTAGATAGTCCACAACACGTCCGGATCCGCCTTAAGATTGACCAACTAGAATCGCCCTTAAGGTACTATTATTTTCGGCTAAATGGGCAAGTAATGTGACTGATTTTTCTGCTCAAAAATCACAGCTTTTATTGTATGAATACTTGTTAAAAACTCTTGTATAAATTTATGACCCTAGGCATATATTTATAGAATCATGGAAAAGGATTTCGAAT ATGAAGCTACGTAAGCAAGTTATCGGTACCATCGTTTGCCATTTACTTCTATACGTTGCAGGAGTAAGTGGACACATAGTACTTATAGTGGTGACCAACAAATGCCCTTTCACAATATGGCCAGCAACAGCCCCTAACACAGGCCATCCGATGATAGCCAATGGTGGGTTCTGCCTAAAATCCGAGCAGTCATCACAAATAAACACTCCATGGGACTGGAGCGGCCGCATCTGGGCACGAACCGGGTGCAACTTCAAGGAAGATAGCGGAGACAACAACATCACAAACAACCCAACATGGAGACCTGCTTGTCAAACAGGGGACTGTGACGGGAGCCTCGAGTGCAATGGACTCATAGGAAAACCCCCAGCAACATTAGTTGAACTCACATTTCAAACAGATAAAAACCAACCAAGCTTCTACGACATTAGTCTCGTGGACGGGTACAACCTGCCTGTCTCCGTCATTGCCGGGCGGTCACCCAAATGCGCCATAAGAGGATGCTTGAGAGATATAAAAGAGATTTGTCCCTTAGAGTTGCAAGTAAATGATGGAAGAGGGAATGTTGTTGCTTGTAAGAGTGCTTGTCTTGCGTTCGATTGGGATGGATTTTGTTGCAGGAACGAGTATGGGAGCCCTGAAAAGTGTAGGCCAAGCTTGTATTCGACTGTTTTTAAGAGCGCTTGTCCGTCTTATGTTAGTTATGCTTATGATTCTCCTTCGCCTTTGTATGGGTCAGGCAAGTTCTGCAGATTGTGTGCATTTCATGTTCTTTCGGAGGCAGTTGATGGAACTCTTGGAGAACTGAAAATCACTGATAATTCAAGCTTGATAAGAAGCAGACAGTTCAGATTAGGTCTAAAGGTTGTCTCAGGTTATGGTGAAGGTGTTCGTATTCATGAAGCAAAAACAGAAGCTTTCACCGTCAAGGATCACGGAGGGGAATGCTAG MKLRKQVIGTIVCHLLLYVAGVSGHIVLIVVTNKCPFTIWPATAPNTGHPMIANGGFCLKSEQSSQINTPWDWSGRIWARTGCNFKEDSGDNNITNNPTWRPACQTGDCDGSLECNGLIGKPPATLVELTFQTDKNQPSFYDISLVDGYNLPVSVIAGRSPKCAIRGCLRDIKEICPLELQVNDGRGNVVACKSACLAFDWDGFCCRNEYGSPEKCRPSLYSTVFKSACPSYVSYAYDSPSPLYGSGKFCRLCAFHVLSEAVDGTLGELKITDNSSLIRSRQFRLGLKVVSGYGEGVRIHEAKTEAFTVKDHGGEC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19484.1 vs. NCBI nr
Match: gi|902184915|gb|KNA10389.1| (hypothetical protein SOVF_144550 [Spinacia oleracea]) HSP 1 Score: 466.5 bits (1199), Expect = 3.800e-128 Identity = 212/214 (99.07%), Postives = 212/214 (99.07%), Query Frame = 1
BLAST of Spo19484.1 vs. NCBI nr
Match: gi|731319589|ref|XP_010670350.1| (PREDICTED: thaumatin-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 399.4 bits (1025), Expect = 5.700e-108 Identity = 185/243 (76.13%), Postives = 207/243 (85.19%), Query Frame = 1
BLAST of Spo19484.1 vs. NCBI nr
Match: gi|870866152|gb|KMT17161.1| (hypothetical protein BVRB_2g040720 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 399.4 bits (1025), Expect = 5.700e-108 Identity = 185/243 (76.13%), Postives = 207/243 (85.19%), Query Frame = 1
BLAST of Spo19484.1 vs. NCBI nr
Match: gi|388502648|gb|AFK39390.1| (unknown [Medicago truncatula]) HSP 1 Score: 325.1 bits (832), Expect = 1.400e-85 Identity = 147/260 (56.54%), Postives = 185/260 (71.15%), Query Frame = 1
BLAST of Spo19484.1 vs. NCBI nr
Match: gi|357496291|ref|XP_003618434.1| (pathogenesis-related thaumatin family protein [Medicago truncatula]) HSP 1 Score: 323.6 bits (828), Expect = 4.000e-85 Identity = 146/260 (56.15%), Postives = 185/260 (71.15%), Query Frame = 1
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSZ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_144550 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 2.600e-128 Identity = 212/214 (99.07%), Postives = 212/214 (99.07%), Query Frame = 1
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FMU6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040720 PE=4 SV=1) HSP 1 Score: 399.4 bits (1025), Expect = 4.000e-108 Identity = 185/243 (76.13%), Postives = 207/243 (85.19%), Query Frame = 1
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Match: I3SGJ8_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 325.1 bits (832), Expect = 9.500e-86 Identity = 147/260 (56.54%), Postives = 185/260 (71.15%), Query Frame = 1
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Match: G7KK13_MEDTR (Pathogenesis-related thaumatin family protein OS=Medicago truncatula GN=MTR_6g009480 PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 2.800e-85 Identity = 146/260 (56.15%), Postives = 185/260 (71.15%), Query Frame = 1
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Match: K4BBQ9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 1.700e-82 Identity = 145/216 (67.13%), Postives = 171/216 (79.17%), Query Frame = 1
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 9.900e-52 Identity = 100/221 (45.25%), Postives = 127/221 (57.47%), Query Frame = 1
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2) HSP 1 Score: 203.4 bits (516), Expect = 3.700e-51 Identity = 94/217 (43.32%), Postives = 130/217 (59.91%), Query Frame = 1
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.600e-49 Identity = 95/224 (42.41%), Postives = 124/224 (55.36%), Query Frame = 1
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 3.600e-46 Identity = 92/215 (42.79%), Postives = 120/215 (55.81%), Query Frame = 1
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 2.400e-45 Identity = 104/235 (44.26%), Postives = 129/235 (54.89%), Query Frame = 1
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Match: AT5G40020.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 286.2 bits (731), Expect = 2.500e-77 Identity = 132/223 (59.19%), Postives = 161/223 (72.20%), Query Frame = 1
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Match: AT5G24620.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 206.5 bits (524), Expect = 2.500e-53 Identity = 103/216 (47.69%), Postives = 122/216 (56.48%), Query Frame = 1
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Match: AT1G73620.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 204.5 bits (519), Expect = 9.500e-53 Identity = 101/231 (43.72%), Postives = 134/231 (58.01%), Query Frame = 1
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Match: AT1G18250.2 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 203.4 bits (516), Expect = 2.100e-52 Identity = 94/217 (43.32%), Postives = 130/217 (59.91%), Query Frame = 1
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Match: AT2G28790.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 196.8 bits (499), Expect = 2.000e-50 Identity = 99/233 (42.49%), Postives = 128/233 (54.94%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19484.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19484.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19484.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19484.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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