Spo12224 (gene) | SpinachBase

Overview


Name	Spo12224
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Glyceraldehyde-3-phosphate dehydrogenase
Location	SpoScf_02633 : 1318 .. 2186 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACCGTTCACTCCATCACTGGTAAGTCTTCTAATAAGTAATGACTGTACTTGCTATTTTGCATAGCGTTCCTCATCTCATGGTTGATCATTTTCATGTGTTGTGTCCAGCCACTAAAAAGACAGTTGATGGTCCATCAGCTAAGGACTGGAGAAGTGGAAGGGCTGCTTCATTCAACGTCATTCCCAGTAGCACTAAAGCAGTTAAGGTAATTTTATAAAAACAATTTCCAATACAACACGTTGTCTTTCACATAAAAGCTCATGTTCTATTGTGTCATGAGAGAGTGTATATATTTTTTCTGCAAGATTATAACGGAGAAGTATGTTAATGTCATGGACCTGACAATTGCTGCATTTGGAAAGGTTTTGCCAGCTTTGAACGGCAAATTGACCGGAATGTCGTTCCGTGTTCCCACTGTTGATGTCTCTATTGTTGACCTTACCGTCAGACTTGAGAAGGGTGCTACCTACGAGCAGATTAAGGATGCCATCAAGTAAGCTACCATCAGTATTATCTCTCTATCATGTCAAATGTATTTTACATGGCTGTGTTTGGTTGGTTATGGTTTTGCAATGCAATTTCACATTTCTTTTTTCTATATTAGGGAGGAATCTGAAGGCAAGTTGAAGGGAATCCTTGGATACACAGAGGATGATGTTGTGTCAACTGAATTTGTTGGTGACAGCAGGTAGGAATTCTTCTCTGCAGGTCTTCCTTATTCTCTTATAGCTTCAGCATCTTACAATGAAATAATGCATATACATCGGTTTACAGGTCAAGCATTTTTGATGCCAAGGCTGGAATTGCCTTGAATGACAACTTTGTGAAGTTCGTTTCCTGGTACGACAACGAGTGGGGTTAC

mRNA sequence

ATGACTACCGTTCACTCCATCACTGCCACTAAAAAGACAGTTGATGGTCCATCAGCTAAGGACTGGAGAAGTGGAAGGGCTGCTTCATTCAACGTCATTCCCAGTAGCACTAAAGCAGTTAAGGTTTTGCCAGCTTTGAACGGCAAATTGACCGGAATGTCGTTCCGTGTTCCCACTGTTGATGTCTCTATTGTTGACCTTACCGTCAGACTTGAGAAGGGTGCTACCTACGAGCAGATTAAGGATGCCATCAAGGAGGAATCTGAAGGCAAGTTGAAGGGAATCCTTGGATACACAGAGGATGATGTTGTGTCAACTGAATTTGTTGGTGACAGCAGGTCAAGCATTTTTGATGCCAAGGCTGGAATTGCCTTGAATGACAACTTTGTGAAGTTCGTTTCCTGGTACGACAACGAGTGGGGTTAC

Coding sequence (CDS)

ATGACTACCGTTCACTCCATCACTGCCACTAAAAAGACAGTTGATGGTCCATCAGCTAAGGACTGGAGAAGTGGAAGGGCTGCTTCATTCAACGTCATTCCCAGTAGCACTAAAGCAGTTAAGGTTTTGCCAGCTTTGAACGGCAAATTGACCGGAATGTCGTTCCGTGTTCCCACTGTTGATGTCTCTATTGTTGACCTTACCGTCAGACTTGAGAAGGGTGCTACCTACGAGCAGATTAAGGATGCCATCAAGGAGGAATCTGAAGGCAAGTTGAAGGGAATCCTTGGATACACAGAGGATGATGTTGTGTCAACTGAATTTGTTGGTGACAGCAGGTCAAGCATTTTTGATGCCAAGGCTGGAATTGCCTTGAATGACAACTTTGTGAAGTTCGTTTCCTGGTACGACAACGAGTGGGGTTAC

Protein sequence

MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNFVKFVSWYDNEWGY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12224.1	Spo12224.1	mRNA

Homology

[Close]

BLAST of Spo12224.1 vs. NCBI nr
Match: gi|902139875|gb|KNA04604.1| (hypothetical protein SOVF_198150, partial [Spinacia oleracea])

HSP 1 Score: 263.5 bits (672), Expect = 2.200e-67
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

		  
Query: 10  TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVSIVDLTV 69
           TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVS+VDLTV
Sbjct: 1   TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVSVVDLTV 60

Query: 70  RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF 129
           RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF
Sbjct: 61  RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF 120

Query: 130 VKFVSWYDNEWGY 143
           VKFVSWYDNEWGY
Sbjct: 121 VKFVSWYDNEWGY 133

[Close]

BLAST of Spo12224.1 vs. NCBI nr
Match: gi|902177258|gb|KNA08925.1| (hypothetical protein SOVF_158250 [Spinacia oleracea])

HSP 1 Score: 262.3 bits (669), Expect = 4.900e-67
Identity = 134/146 (91.78%), Postives = 138/146 (94.52%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLPALNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEKGATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKGATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVKFVSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKFVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. NCBI nr
Match: gi|1345501|emb|CAA42103.1| (glycolytic glyceraldehyde 3-phosphate dehydrogenase [Antirrhinum majus])

HSP 1 Score: 255.0 bits (650), Expect = 7.800e-65
Identity = 131/146 (89.73%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 176 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 235

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 236 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 295

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 296 FDAKAGIALNDNFVKLVSWYDNEWGY 321

[Close]

BLAST of Spo12224.1 vs. NCBI nr
Match: gi|1013854174|gb|AMT91855.1| (glyceraldehyde 3-phosphate dehydrogenase [Apium graveolens])

HSP 1 Score: 255.0 bits (650), Expect = 7.800e-65
Identity = 131/146 (89.73%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. NCBI nr
Match: gi|120666|sp|P25861.1|G3PC_ANTMA (RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase, cytosolic)

HSP 1 Score: 255.0 bits (650), Expect = 7.800e-65
Identity = 131/146 (89.73%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBH3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_198150 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.500e-67
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

		  
Query: 10  TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVSIVDLTV 69
           TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVS+VDLTV
Sbjct: 1   TKKTVDGPSAKDWRSGRAASFNVIPSSTKAVKVLPALNGKLTGMSFRVPTVDVSVVDLTV 60

Query: 70  RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF 129
           RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF
Sbjct: 61  RLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSIFDAKAGIALNDNF 120

Query: 130 VKFVSWYDNEWGY 143
           VKFVSWYDNEWGY
Sbjct: 121 VKFVSWYDNEWGY 133

[Close]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNV5_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Spinacia oleracea GN=SOVF_158250 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.400e-67
Identity = 134/146 (91.78%), Postives = 138/146 (94.52%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLPALNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEKGATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKGATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVKFVSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKFVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Match: A0A142NIP8_APIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Apium graveolens PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.400e-65
Identity = 131/146 (89.73%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Match: A0A161YIU5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016414 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.200e-64
Identity = 130/146 (89.04%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 128 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 187

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY+QIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 188 VPTVDVSVVDLTVRLEKKATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 247

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 248 FDAKAGIALNDNFVKLVSWYDNEWGY 273

[Close]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Match: Q6RUQ2_DAUCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Daucus carota GN=G3PDH PE=2 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.200e-64
Identity = 130/146 (89.04%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY+QIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKKATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 4.900e-67
Identity = 131/146 (89.73%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGKLKGILGYTEDDVVST+FVGDSRSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNFVK VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.000e-66
Identity = 126/146 (86.30%), Postives = 135/146 (92.47%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPS KDWR GRAASFN+IPSST A     KVLP+LNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVR+EK ATYEQ+K AIKEESEGKLKGILGYTEDDVVST+FVGD+RSSI
Sbjct: 237 VPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIALNDNF+K VSWYDNEWGY
Sbjct: 297 FDAKAGIALNDNFIKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.200e-66
Identity = 128/146 (87.67%), Postives = 134/146 (91.78%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPSAKDWR GRAASFN+IPSST A     KVLPALNGKLTGMSFR
Sbjct: 177 MTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 236

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATYEQIK AIKEESEGK+KGILGYTEDDVVST+FVGD+RSSI
Sbjct: 237 VPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSI 296

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGI LN NFVK VSWYDNEWGY
Sbjct: 297 FDAKAGICLNGNFVKLVSWYDNEWGY 322

[Close]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Match: G3PC1_ARATH (Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic OS=Arabidopsis thaliana GN=GAPC1 PE=1 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 4.600e-65
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPS KDWR GRAASFN+IPSST A     KVLPALNGKLTGMSFR
Sbjct: 179 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 238

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY++IK AIKEESEGKLKGILGYTEDDVVST+FVGD+RSSI
Sbjct: 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSI 298

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIAL+D FVK VSWYDNEWGY
Sbjct: 299 FDAKAGIALSDKFVKLVSWYDNEWGY 324

[Close]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 7.800e-65
Identity = 125/146 (85.62%), Postives = 134/146 (91.78%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPS KDWR GRAASFN+IPSST A     KVLP LNGKLTGMSFR
Sbjct: 179 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFR 238

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY++IK AIKEES+GKLKGILGYTEDDVVST+FVGD+RSSI
Sbjct: 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSI 298

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIAL+DNFVK VSWYDNEWGY
Sbjct: 299 FDAKAGIALSDNFVKLVSWYDNEWGY 324

[Close]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Match: AT3G04120.1 (glyceraldehyde-3-phosphate dehydrogenase C subunit 1)

HSP 1 Score: 248.4 bits (633), Expect = 2.600e-66
Identity = 126/146 (86.30%), Postives = 134/146 (91.78%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPS KDWR GRAASFN+IPSST A     KVLPALNGKLTGMSFR
Sbjct: 179 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 238

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY++IK AIKEESEGKLKGILGYTEDDVVST+FVGD+RSSI
Sbjct: 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSI 298

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIAL+D FVK VSWYDNEWGY
Sbjct: 299 FDAKAGIALSDKFVKLVSWYDNEWGY 324

[Close]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Match: AT1G13440.1 (glyceraldehyde-3-phosphate dehydrogenase C2)

HSP 1 Score: 246.5 bits (628), Expect = 9.800e-66
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVHSITAT+KTVDGPS KDWR GRAASFN+IPSST A     KVLP+LNGKLTGMSFR
Sbjct: 179 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR 238

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPTVDVS+VDLTVRLEK ATY++IK AIKEESEGK+KGILGYTEDDVVST+FVGD+RSSI
Sbjct: 239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSI 298

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDAKAGIAL+D FVK VSWYDNEWGY
Sbjct: 299 FDAKAGIALSDKFVKLVSWYDNEWGY 324

[Close]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Match: AT1G79530.1 (glyceraldehyde-3-phosphate dehydrogenase of plastid 1)

HSP 1 Score: 215.7 bits (548), Expect = 1.800e-56
Identity = 109/146 (74.66%), Postives = 122/146 (83.56%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVH+ TAT+KTVDGPS KDWR GR AS N+IPSST A     KVLP LNGKLTGM+FR
Sbjct: 259 MTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFR 318

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPT +VS+VDLT RLEKGA+YE +K AIK  SEG LKGILGYT++DVVS +FVGDSRSSI
Sbjct: 319 VPTSNVSVVDLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSRSSI 378

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDA AGI L+ +FVK VSWYDNEWGY
Sbjct: 379 FDANAGIGLSKSFVKLVSWYDNEWGY 404

[Close]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Match: AT1G16300.1 (glyceraldehyde-3-phosphate dehydrogenase of plastid 2)

HSP 1 Score: 209.5 bits (532), Expect = 1.300e-54
Identity = 106/146 (72.60%), Postives = 121/146 (82.88%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAV----KVLPALNGKLTGMSFR 60
           MTTVH+ TAT+KTVDGPS KDWR GR AS N+IPSST A     KVLP LNGKLTGM+FR
Sbjct: 257 MTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFR 316

Query: 61  VPTVDVSIVDLTVRLEKGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSSI 120
           VPT +VS+VDLT RLEK A+YE +K AIK  SEG L+GILGYTE+DVVS +F+GDSRSSI
Sbjct: 317 VPTPNVSVVDLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSNDFLGDSRSSI 376

Query: 121 FDAKAGIALNDNFVKFVSWYDNEWGY 143
           FDA AGI L+ +F+K VSWYDNEWGY
Sbjct: 377 FDANAGIGLSKSFMKLVSWYDNEWGY 402

[Close]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Match: AT1G42970.1 (glyceraldehyde-3-phosphate dehydrogenase B subunit)

HSP 1 Score: 119.8 bits (299), Expect = 1.400e-27
Identity = 64/147 (43.54%), Postives = 93/147 (63.27%), Query Frame = 1

		  
Query: 1   MTTVHSITATKKTVDGPSAKDWRSGRAASFNVIPSSTKAVK----VLPALNGKLTGMSFR 60
           MTT HS T  ++ +D  S +D R  RAA+ N++P+ST A K    VLP L GKL G++ R
Sbjct: 258 MTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALR 317

Query: 61  VPTVDVSIVDLTVRLE-KGATYEQIKDAIKEESEGKLKGILGYTEDDVVSTEFVGDSRSS 120
           VPT +VS+VDL + +E KG T E + +A ++ + G +KGIL   +  +VS +F     S+
Sbjct: 318 VPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVST 377

Query: 121 IFDAKAGIALNDNFVKFVSWYDNEWGY 143
             D+   + + D+ VK V+WYDNEWGY
Sbjct: 378 TIDSSLTMVMGDDMVKVVAWYDNEWGY 403

The following BLAST results are available for this feature:

BLAST of Spo12224.1 vs. NCBI nr
BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
BLAST of Spo12224.1 vs. TAIR (Arabidopsis)

BLAST of Spo12224.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902139875\|gb\|KNA04604.1\|	2.2e-67	99.2	hypothetical protein SOVF_1981...	[more]
gi\|902177258\|gb\|KNA08925.1\|	4.9e-67	91.7	hypothetical protein SOVF_1582...	[more]
gi\|1345501\|emb\|CAA42103.1\|	7.8e-65	89.7	glycolytic glyceraldehyde 3-ph...	[more]
gi\|1013854174\|gb\|AMT91855.1\|	7.8e-65	89.7	glyceraldehyde 3-phosphate deh...	[more]
gi\|120666\|sp\|P25861.1\|G3PC_ANTMA	7.8e-65	89.7	RecName: Full=Glyceraldehyde-3...	[more]

BLAST of Spo12224.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QBH3_SPIOL	1.5e-67	99.2	Uncharacterized protein (Fragm...	[more]
A0A0K9QNV5_SPIOL	3.4e-67	91.7	Glyceraldehyde-3-phosphate deh...	[more]
A0A142NIP8_APIGR	5.4e-65	89.7	Glyceraldehyde-3-phosphate deh...	[more]
A0A161YIU5_DAUCA	1.2e-64	89.0	Uncharacterized protein OS=Dau...	[more]
Q6RUQ2_DAUCA	1.2e-64	89.0	Glyceraldehyde-3-phosphate deh...	[more]

BLAST of Spo12224.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
G3PC_ANTMA	4.9e-67	89.7	Glyceraldehyde-3-phosphate deh...	[more]
G3PC_DIACA	7.0e-66	86.3	Glyceraldehyde-3-phosphate deh...	[more]
G3P_ATRNU	9.2e-66	87.6	Glyceraldehyde-3-phosphate deh...	[more]
G3PC1_ARATH	4.6e-65	86.3	Glyceraldehyde-3-phosphate deh...	[more]
G3PC_SINAL	7.8e-65	85.6	Glyceraldehyde-3-phosphate deh...	[more]

BLAST of Spo12224.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT3G04120.1	2.6e-66	86.3	glyceraldehyde-3-phosphate deh...	[more]
AT1G13440.1	9.8e-66	84.9	glyceraldehyde-3-phosphate deh...	[more]
AT1G79530.1	1.8e-56	74.6	glyceraldehyde-3-phosphate deh...	[more]
AT1G16300.1	1.3e-54	72.6	glyceraldehyde-3-phosphate deh...	[more]
AT1G42970.1	1.4e-27	43.5	glyceraldehyde-3-phosphate deh...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain	PFAM	PF02800	Gp_dh_C	coord: 1..136 score: 1.9
IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	PRINTS	PR00078	G3PDHDRGNASE	coord: 52..69 score: 3.5E-16coord: 92..107 score: 3.5
IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family	PANTHER	PTHR10836	GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE	coord: 1..142 score: 2.0E
None	No IPR available	GENE3D	3.30.360.10		coord: 1..138 score: 7.7
None	No IPR available	PANTHER	PTHR10836:SF44	SUBFAMILY NOT NAMED	coord: 1..142 score: 2.0E
None	No IPR available	unknown	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	coord: 1..136 score: 1.88

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006862	nucleotide transport
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0009744	response to sucrose
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009611	response to wounding
biological_process	GO:0016246	RNA interference
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043269	regulation of ion transport
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0043069	negative regulation of programmed cell death
biological_process	GO:0048825	cotyledon development
biological_process	GO:0061025	membrane fusion
biological_process	GO:0010351	lithium ion transport
biological_process	GO:0006869	lipid transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0015802	basic amino acid transport
biological_process	GO:0015696	ammonium transport
biological_process	GO:0043090	amino acid import
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0042742	defense response to bacterium
cellular_component	GO:0000932	P-body
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005635	nuclear envelope
cellular_component	GO:0005829	cytosol
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0050661	NADP binding
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0008536	Ran GTPase binding
molecular_function	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24687	0.79	Barchart \| Table
Spo04893	0.72	Barchart \| Table
Spo21203	0.72	Barchart \| Table
Spo21295	0.71	Barchart \| Table
Spo22215	0.71	Barchart \| Table
Spo23496	0.70	Barchart \| Table
Spo23236	0.69	Barchart \| Table
Spo20549	0.68	Barchart \| Table
Spo21010	0.68	Barchart \| Table
Spo25115	0.67	Barchart \| Table
Spo16598	0.67	Barchart \| Table
Spo17898	0.67	Barchart \| Table
Spo21082	0.67	Barchart \| Table
Spo21968	0.67	Barchart \| Table
Spo23622	0.67	Barchart \| Table
Spo03315	0.67	Barchart \| Table
Spo08258	0.66	Barchart \| Table
Spo21969	0.66	Barchart \| Table
Spo09711	0.66	Barchart \| Table
Spo22939	0.66	Barchart \| Table
Spo24870	0.65	Barchart \| Table
Spo09672	0.65	Barchart \| Table
Spo12425	0.65	Barchart \| Table