Spo12609 (gene)

Overview
NameSpo12609
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02836 : 6286 .. 8869 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGATGATTAAATGAGTGTGTTCAAGATTTATTAATTATGTTGTAACGTTAGGGAGAGGAATACTTAAGTCAAATCTATTCTAATATTTAATAGCAGGGAAGTTGAAGTGCCACGTGGCCCCTTCCTGGAATTTCAATATTTTATTTTATTTTTAAAAAAAAAAAACAAAAACAACAACTAAAACATACGGAGTAAACATTAGAAGATCTAAAGTCATTGTCTTCTCCAACTTCAACTCCCTCCTTCAACCTTCGCATCTGAGAAATCACTAAAACCAAATTGCATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGTATTGCATGTTCAATTAATTTTTTCCCTTATGTTGTTATGGAATTTGGCCTACTTATTTTGGGCGGATTTTAGTGGGAAAAGATTGTGGTATTGTTTTGATTGTTTAAGATTTTAGATGATTTTACATTAATTTAGGGTATAATTTCGAGAAGAATTTCTTATCCTTTGTAATTCTTGAACTTCTTCACGGTACATGTAATTTTTCAGGATCAATTTACAAAATTAGGTAATTCTTTGTTCTATTGATTGCTTTGGTGTTTGTTAGAAATTTAGGAAAATTAGTTTGTTTTGGGCAGATTTTAATCAGAAAGATTGAGGTTTAATTGCAATCAATTATGAAAATTACCTCTTTGATTGAATTTTATCTTATATTCTACTTTGAAGTATTTGATTTATTGAATGAGTATGAAATTGTTTAAGAGAAAAGATGTATACATTTTGCTGCGTAATGGAGTTTTTAGTAGCATTGTCAGGTGTAGAATGAAGGCACAGATCGTTACAAGGTGACTCCTTTGTTTATGACGACGACACCATTTGATGGTCTGATTGAAATTGAATAAAACGAAATTGAACTTTTTTTTTTTTTGTTTGAGTTAAATTTTAGAAATCATGAAGTTTTTCGGGAAAAAAAGTTACTCCCTTATATTGGAAGTATAAGCTTTTACCTTAGTTTAAGTCAGATCCTTGCTAATTTCTTAGTTTAAGACCTAGGCAACAACAACACCAACCACTCCTTGGTCTAATATTTTGCCGCAAAAAAGACTTAAGTAGTGAAAGTTATGGATTAAGGAAGGGGGGAAGGGAGATGTAACTGATGATGGGAGAGAACCTTGTGGTTCCACTATATAAGTCTGTTCTATATACTCTGTATTTTCTTATGCTATGATTGCTGACAGTAGCAGTAGTTTATATCATGAATATAGAATGTAATTCATGTTTGATTTTTCATTTTGTACTCTTTATTCAGTATGAACCATATCATTCAAATGGGTATTTTCCTCTTTTATATTACGGGGTAATATTAAAGCCCAACTTAATTTAATTATTTAACCTTTTTTTGGTTTGATTTGTGGATGATCTTGAATGGTGGTAACAAATGAATCCAAAAAAGTAACCTATGAATTTTATGAGTGATATTTGTTCCCTTTTTCTAATATTATCTTGTGGAGAAACTAACATCGTTGAAGTTACCATAATATTGTGGGAAAACAATTGTTTAGAGTTTTATAGACGGATAAATACATCTAACATTACTGGGGTATGTTTCTTCTTTACAAGAAATTTATCCTCCGTAGTTCAAACGCCAATTGAGCAAAGTAAGTTTGCTATAATTTCAAGTTTTTTCATAGTACTATGGGCTCGGAAGGGATGTCATTTTCCGGAATATACCAAAAGATAAAAGTGTGCACAAGTCACTTAAAAAGACAATGCTTTTTAATTGATCTTATACAAAACGTAGCACATAATGTTCGTGCATCGCATGGAACATAATTTGAATGAGGTTTTCATGCCTTCTGCATCTCCCTTTTGATAAACTTCAAATGTCTTCAACTTTGTTTAATTATTGTTGTATTGTGCTTACTGTCTAATATAGGATATGGATAAATGTATATACAAGCTCCCTATCATTCTCTAATCAAACTTGATCATTCATATACATATACGTAGTATAATTATTTGTGTAGTTTTAGTGTTCCTCATATTGCCTTTTGATAGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAAAGAGAAGGCCAATTCATCCCCGAAGCAATAATTCACAAAATCTGTTAAAGTGAAGATTCACTTTACACTAAAAAATTAAGAGTTGCCTAGAAATGTATATTACACCTATTTTACGCCGAACCACTATGTACAACATATGCAAATTTTTAATTCTTGCGTAATTTTGTAAAGCATTTGTTATGAGTATTTTTTTTTTCTTCATACTATTGTTTGAAATTGTTAC

mRNA sequence

ATTGGATGATTAAATGAGTGTGTTCAAGATTTATTAATTATGTTGTAACGTTAGGGAGAGGAATACTTAAGTCAAATCTATTCTAATATTTAATAGCAGGGAAGTTGAAGTGCCACGTGGCCCCTTCCTGGAATTTCAATATTTTATTTTATTTTTAAAAAAAAAAAACAAAAACAACAACTAAAACATACGGAGTAAACATTAGAAGATCTAAAGTCATTGTCTTCTCCAACTTCAACTCCCTCCTTCAACCTTCGCATCTGAGAAATCACTAAAACCAAATTGCATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAAAGAGAAGGCCAATTCATCCCCGAAGCAATAATTCACAAAATCTGTTAAAGTGAAGATTCACTTTACACTAAAAAATTAAGAGTTGCCTAGAAATGTATATTACACCTATTTTACGCCGAACCACTATGTACAACATATGCAAATTTTTAATTCTTGCGTAATTTTGTAAAGCATTTGTTATGAGTATTTTTTTTTTCTTCATACTATTGTTTGAAATTGTTAC

Coding sequence (CDS)

ATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAA

Protein sequence

MNSPIQVSKYIFDLQAFNFKTNKNPTSYLFGYRLQKDTFLRISISCLLSSIPFKNCSHLLKFLLSSNSSPIHLFLFIGSPIFLNSSNFQISSSLIREFVTIEEQGLNGKYCFRRTPIK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12609.1Spo12609.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12609.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12609.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12609.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12609.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006768 biotin metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0009657 plastid organization
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0010206 photosystem II repair
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0051090 regulation of DNA-binding transcription factor activity
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0045017 glycerolipid biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0042318 penicillin biosynthetic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006650 glycerophospholipid metabolic process
biological_process GO:0046168 glycerol-3-phosphate catabolic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006750 glutathione biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0017001 antibiotic catabolic process
biological_process GO:0048653 anther development
biological_process GO:0010089 xylem development
biological_process GO:0048367 shoot system development
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043067 regulation of programmed cell death
biological_process GO:0051604 protein maturation
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0009553 embryo sac development
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006457 protein folding
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009651 response to salt stress
biological_process GO:0007165 signal transduction
biological_process GO:0009658 chloroplast organization
biological_process GO:0043090 amino acid import
biological_process GO:0000023 maltose metabolic process
biological_process GO:0050983 obsolete deoxyhypusine biosynthetic process from spermidine
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0016020 membrane
cellular_component GO:0009331 glycerol-3-phosphate dehydrogenase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0005622 intracellular
molecular_function GO:0008800 beta-lactamase activity
molecular_function GO:0004416 hydroxyacylglutathione hydrolase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0043621 protein self-association
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0034038 deoxyhypusine synthase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0003756 protein disulfide isomerase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo084070.78Barchart | Table
Spo237450.76Barchart | Table
Spo244300.75Barchart | Table
Spo259870.75Barchart | Table
Spo026650.74Barchart | Table
Spo153170.74Barchart | Table
Spo146300.74Barchart | Table
Spo016280.73Barchart | Table
Spo109650.73Barchart | Table
Spo250080.73Barchart | Table
Spo233320.72Barchart | Table
Spo021060.72Barchart | Table
Spo159950.72Barchart | Table
Spo177260.72Barchart | Table
Spo002050.72Barchart | Table
Spo201060.72Barchart | Table
Spo259850.71Barchart | Table
Spo257170.71Barchart | Table
Spo152730.71Barchart | Table
Spo092320.71Barchart | Table
Spo191230.70Barchart | Table
Spo053070.70Barchart | Table
Spo139810.70Barchart | Table
Spo041230.70Barchart | Table
Spo259810.70Barchart | Table
Spo233820.70Barchart | Table
Spo019250.69Barchart | Table
Spo168010.69Barchart | Table
Spo266100.69Barchart | Table
Spo243240.69Barchart | Table
Spo108350.69Barchart | Table
Spo116880.69Barchart | Table
Spo211550.69Barchart | Table
Spo143540.69Barchart | Table
Spo044860.68Barchart | Table
Spo155240.68Barchart | Table
Spo009430.68Barchart | Table
Spo209300.68Barchart | Table
Spo123320.68Barchart | Table
Spo194310.68Barchart | Table
Spo147230.68Barchart | Table
Spo209120.68Barchart | Table
Spo094340.68Barchart | Table
Spo085910.68Barchart | Table
Spo240460.68Barchart | Table
Spo083510.68Barchart | Table
Spo247360.67Barchart | Table
Spo004980.67Barchart | Table
Spo005260.67Barchart | Table
Spo006770.67Barchart | Table
Spo015150.67Barchart | Table
Spo026960.67Barchart | Table
Spo029790.67Barchart | Table
Spo031990.67Barchart | Table
Spo069530.67Barchart | Table
Spo095540.67Barchart | Table
Spo152220.67Barchart | Table
Spo216000.67Barchart | Table
Spo220040.67Barchart | Table
Spo226940.67Barchart | Table
Spo243310.67Barchart | Table
Spo137830.66Barchart | Table
Spo012520.66Barchart | Table
Spo011320.66Barchart | Table
Spo007430.66Barchart | Table
Spo134300.66Barchart | Table
Spo104910.66Barchart | Table
Spo234150.66Barchart | Table
Spo237080.66Barchart | Table
Spo100310.66Barchart | Table
Spo097980.66Barchart | Table
Spo273640.66Barchart | Table
Spo051250.66Barchart | Table
Spo251960.66Barchart | Table
Spo192170.66Barchart | Table
Spo185780.66Barchart | Table
Spo175780.66Barchart | Table
Spo215910.65Barchart | Table
Spo255730.65Barchart | Table
Spo238530.65Barchart | Table
Spo042000.65Barchart | Table
Spo090080.65Barchart | Table
Spo027490.65Barchart | Table
Spo087130.65Barchart | Table
Spo084780.65Barchart | Table
Spo259830.65Barchart | Table