Spo10493 (gene)

Overview
NameSpo10493
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L29
LocationSpoScf_03043 : 31616 .. 35087 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGAACAAGAAAAAGAAAGAGTGGGGGAAGCAAGAGTGAGAGAGGATAAACAAAAACCTTATCTAGAGCTCCCAATTCAAAGCAGAGTAACGGAAGAAGCAGCGCAAAGCAAAATTGAAAGAAAATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTAACTTTTTATTTCTCCATTTTATCTTCTTAATTGGCTGTTAATTTTGATTTTTTTTCATCTGGGTTTGATTATGTGATTGGAATGATATTTATTTGAGGTAATTAGGTAAATGTTGTTATGTTTAATACGAAGTACTTTCTTTGTGGGGATTTAATTGTCACATTACTTGTTCAAATTACACAATCAACATGAATATGGGAGTATGTGAAACCAACAATTGGATAATATCATAATGCTGAGAAGTGATGGGTGATGATAAAGGTCGCAAGTTGCGACAATATTTAGTTGTCGCAATCTTACGTGTCGCAGTTTAATTGGTACATATAGGCGACACGTAGGCTATGAGTCATAATAATATTTTTACTATCAATGCAATATTTTTACTATGAAAATATGTAAATAAGGTAGTCGATATAAATAAGGAAACAAATTAGAATATTAAGATTTTCCTAGCTTTTTTTGAAACATTTAAAGTAGGATATATAAATTAAATATTTTAGTTTCCAATTTAATCATGACACATAAGCATGCCATGTCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGGAGAAGTGATAACATTGTCTTATGTTGGATGGTTTTAGAATAGAGCATGAAATCCTGGTCTTCTAGGCCAAGGGTTTATCTGGTAGCTAAGATGTGAGTTGGCCTGTTCGTGGTTGTGGCTAAAGATGGGATTATCCACTAATTTTTTTACCTGAGAATGGACACAATTAGGCTAATGAAGTTCCTCCTTCATATTGCAAGGTTTTACACAACAGGAAGAGGACACTTTTGATCAATAATTCTAACATTACTAAGATAGATCCTGTTATAAGGTTAAAAAATATTCCCTGTCTTGTACTCTTGGGATTATCCACTAATTTTTTTACCCGAGAATGGACACTATTAGGCCATTGAAGTCCCCCCTTCATATTGCAAGGTTTTATCCAGCAGGAAGAGGACACTTTTGATCAATAATTCTAACATTACTAAGATAGATCCTGTTATAAGGTTAACAAAACATTCCCCGTCTTGTACTGTTATTGCAAGGGGCGAATGAGCGGTATGAGATATTGGTAATTGCAGGATTACCAGGTCTGATTTTGTTGCTGGAGTTTTGGTCTGAAAAGTAGTCACTGGCATATTAGTTTAATTCTTTTAGTGAAGTTTTGAGCTCAAAAAACTACTTATGAGTTACGGCTCTAGGAGCACTTTATGTTTCGCTTGGAGGGTTATGATCTTTGGGCATGGAGAAAGTACTGCTTTCGGAAAATTGGGCCTTCTGATCGGTTTTAGTTGTGATGAATGTGGATTTGGTGTAGCTCTGAAAACTTAGTATATGGAGTACTTAGCAGTAGAAGATAGGTGCATAGGTGCAAACTGCTGTGATATCAAACACATTTTTAAGGTTTTTGCCGTTTATGTTGTGACTTGTGAGTCTTGTGAGGGGGTTTTATCTGGCCTCTCATGTTGAGAAATTTAATATCCATTCAAACCAATTTAATCATGTGACTATTTGAAAATGCTCTTTGTTGGTCGTTTTCATTATCTCGATAAATAAATATATCTTGGGTTGTTGTATATGTGTTTCCCCTTTAATGGGTATATTTTGTCCTTTTCCCTTTTATGCTTGGAAAGGTAACGATCAATAGTATTTCAACCAGTGCTAGCCGCCCCTGTACATGGTTATGGAGTTACTTCCTTCCCCTTTTAATACATGAATTATTTGACATATTGGTTCTCATTATGTAAGATATTGGGATTTCATTGTTTTCTTAACAATACAGTTTCTCTGGTTTTACATTGGTTGATGAAATGCACACTTGTACGTTTGGGCCACACTATACTCTGACTTAGAAAGATCTATGATGTGGGTTGTAAACAATCCTCTTTTAGGGACAATCTTAAGTCTTTGGTCACAATTGGTGACCTAGCTAGTCCCTCAAGGTCCTCAACATAGCTAATTAGTTAGACATGATAGCCTCCATATCTGTTCATGTAATTAGGTTCTTAAACTTGATGACCCTGATTGATAGCTTTCACTTATGTACTTTGCGTTGCTGCTGCTGTCATTGGATTTCTGTACTAATAAAATAATACAATCCTGATTGACACTCCTTAACACCAGTATTAATCTATGTGATTTAAGCATAACTTCTGTATTACTGATGGTAAATGTCTTGTTGAACTTATATTGAGCCCTGCCCTATATGAATAAGTATTAATAAACTAATTTTCTCAACACTAGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAATGAGCTTAATATCTGTTAGTAAACATGTATCCATACAGAGCAGTATTTGTAGTTATTCATGGTAGGATCTCAATCAACTTTTTTGTATCAGACAATTCATTTGTAAATTTCGGTTCTTCCCTTGTTTGATCTTTCCTCTTACATGCTGTTATCGAAGTCTCATTGGTCATTACTTTGGATTAGGGCTAAGTAAACTCTATTTTTTGTTGGCTTTTTGCATGTTGCCATCAGAATTCAGAAATAGTCTGACAGACACTGAGACAGTAGAGAGTTCATTCTGTTCCTGTCATTCTCTGCCTTGAAGAATCATCCACGCGTAACATTGTCAACTTTGTGATCATCTTTCTGCAATTTTTTTAAATATGAAGATGATGTGAATTGTATCTTTATGCAATATTATTTGTTTAATGTCTTTTTGGCCTCTCTGTAAGACGTTACTTACTTCATGGAGATGCTGCTTGATTTTGTGCATTCAAATTTTCCTGGAAGATTTCTCTAATATCTGCAGCTTTGAACTCTGAAATTAGTCAACTACGAGTACTATAAACACCACCTAATGTAAAC

mRNA sequence

AACTGAACAAGAAAAAGAAAGAGTGGGGGAAGCAAGAGTGAGAGAGGATAAACAAAAACCTTATCTAGAGCTCCCAATTCAAAGCAGAGTAACGGAAGAAGCAGCGCAAAGCAAAATTGAAAGAAAATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAATGAGCTTAATATCTGTTAGTAAACATGTATCCATACAGAGCAGTATTTGTAGTTATTCATGGTAGGATCTCAATCAACTTTTTTGTATCAGACAATTCATTTGTAAATTTCGGTTCTTCCCTTGTTTGATCTTTCCTCTTACATGCTGTTATCGAAGTCTCATTGGTCATTACTTTGGATTAGGGCTAAGTAAACTCTATTTTTTGTTGGCTTTTTGCATGTTGCCATCAGAATTCAGAAATAGTCTGACAGACACTGAGACAGTAGAGAGTTCATTCTGTTCCTGTCATTCTCTGCCTTGAAGAATCATCCACGCGTAACATTGTCAACTTTGTGATCATCTTTCTGCAATTTTTTTAAATATGAAGATGATGTGAATTGTATCTTTATGCAATATTATTTGTTTAATGTCTTTTTGGCCTCTCTGTAAGACGTTACTTACTTCATGGAGATGCTGCTTGATTTTGTGCATTCAAATTTTCCTGGAAGATTTCTCTAATATCTGCAGCTTTGAACTCTGAAATTAGTCAACTACGAGTACTATAAACACCACCTAATGTAAAC

Coding sequence (CDS)

ATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAA

Protein sequence

MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo10493.1Spo10493.1mRNA


Homology
[Close]
BLAST of Spo10493.1 vs. NCBI nr
Match: gi|902206968|gb|KNA15596.1| (hypothetical protein SOVF_096810 [Spinacia oleracea])

HSP 1 Score: 306.2 bits (783), Expect = 3.500e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK
Sbjct: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR
Sbjct: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA
Sbjct: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168
[Close]
BLAST of Spo10493.1 vs. NCBI nr
Match: gi|731338849|ref|XP_010680537.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.400e-60
Identity = 134/164 (81.71%), Postives = 144/164 (87.80%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLA HSLSS P S  LT PPKSTLL KSSFHGLRLPS N +  LRLR Q  PS+VV+M K
Sbjct: 1   MLASHSLSSIPSSPSLTFPPKSTLLAKSSFHGLRLPSFNPTPILRLRAQASPSTVVMMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKTNE+LNEEILQLKGELFMLRLQRSARENFKPSDF RMR RVARMLTVKR
Sbjct: 61  REEELKEIRTKTNEELNEEILQLKGELFMLRLQRSARENFKPSDFSRMRSRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQ-EKATAEA 164
           EREIEQGVGKRLSRKLDK WKRSIV++PPPSLK LQ EKA+AEA
Sbjct: 121 EREIEQGVGKRLSRKLDKQWKRSIVIKPPPSLKNLQVEKASAEA 164
[Close]
BLAST of Spo10493.1 vs. NCBI nr
Match: gi|359485888|ref|XP_003633349.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 181.4 bits (459), Expect = 1.300e-42
Identity = 105/156 (67.31%), Postives = 125/156 (80.13%), Query Frame = 1 

		  

Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+ N  S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPNKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161
[Close]
BLAST of Spo10493.1 vs. NCBI nr
Match: gi|731434995|ref|XP_010645220.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 1.100e-41
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 1 

		  

Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+    S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 37  SSLKIPPKTTSTFPKSSFNGIRIPTPYKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 96

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 97  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 156

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 157 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 188
[Close]
BLAST of Spo10493.1 vs. NCBI nr
Match: gi|565361224|ref|XP_006347357.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Solanum tuberosum])

HSP 1 Score: 175.6 bits (444), Expect = 7.100e-41
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           M+++   S +P  SG+T   K  L +KSSFHG+R+P +  + ++     + PS VV M K
Sbjct: 1   MMSLSIASPSPSPSGVTFTSKINL-SKSSFHGIRIPKIIQARAVNAPPPSCPSLVVKMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKT E+L EEI+ LKGELFMLRLQRSAR  FK S+F RMRKR+ARMLTVKR
Sbjct: 61  REEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           ERE+E+G+ KR+SRKLD+ WK+SIV RPPPSLKKL+E+  AE   E A
Sbjct: 121 EREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESA 167
[Close]
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096810 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.400e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK
Sbjct: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR
Sbjct: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA
Sbjct: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168
[Close]
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4P8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g135040 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.600e-61
Identity = 134/164 (81.71%), Postives = 144/164 (87.80%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLA HSLSS P S  LT PPKSTLL KSSFHGLRLPS N +  LRLR Q  PS+VV+M K
Sbjct: 1   MLASHSLSSIPSSPSLTFPPKSTLLAKSSFHGLRLPSFNPTPILRLRAQASPSTVVMMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKTNE+LNEEILQLKGELFMLRLQRSARENFKPSDF RMR RVARMLTVKR
Sbjct: 61  REEELKEIRTKTNEELNEEILQLKGELFMLRLQRSARENFKPSDFSRMRSRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQ-EKATAEA 164
           EREIEQGVGKRLSRKLDK WKRSIV++PPPSLK LQ EKA+AEA
Sbjct: 121 EREIEQGVGKRLSRKLDKQWKRSIVIKPPPSLKNLQVEKASAEA 164
[Close]
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: F6I6Q6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.000e-43
Identity = 105/156 (67.31%), Postives = 125/156 (80.13%), Query Frame = 1 

		  

Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+ N  S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPNKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161
[Close]
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.600e-42
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 1 

		  

Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+    S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPYKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161
[Close]
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: M1CK76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026946 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.000e-41
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1 

		  

Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           M+++   S +P  SG+T   K  L +KSSFHG+R+P +  + ++     + PS VV M K
Sbjct: 1   MMSLSIASPSPSPSGVTFTSKINL-SKSSFHGIRIPKIIQARAVNAPPPSCPSLVVKMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKT E+L EEI+ LKGELFMLRLQRSAR  FK S+F RMRKR+ARMLTVKR
Sbjct: 61  REEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           ERE+E+G+ KR+SRKLD+ WK+SIV RPPPSLKKL+E+  AE   E A
Sbjct: 121 EREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESA 167
[Close]
BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.300e-39
Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = 1 

		  

Query: 22  STLLTKSSFHGLRLP---SVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNE 81
           S   T SSFHG+R+    S  + ++  +   +P  SVV+M K+E ELKE+R+KT EQL E
Sbjct: 21  SATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQE 80

Query: 82  EILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDK 141
           E++ LKGELFMLRLQ+SAR  FK SDF RM+K+VARMLTVKREREI++G+ KRLSRKLD+
Sbjct: 81  EVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDR 140

Query: 142 AWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
            WK+SIV RPPPSLKKLQE+  AE  AE A
Sbjct: 141 QWKKSIVPRPPPSLKKLQEEEAAEEAAEAA 170
[Close]
BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-31
Identity = 82/157 (52.23%), Postives = 109/157 (69.43%), Query Frame = 1 

		  

Query: 9   STPCSSGLTSPPKSTLLTK--SSFHGLRLPSVNLSSSLRLRVQTPPS-----SVVVMVKK 68
           S   +S L S P+        ++F  +RL     +    L V + P+     ++V M K+
Sbjct: 5   SLAAASPLASIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKR 64

Query: 69  EDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKRE 128
           E EL+E+R  T EQ+ EE++ LKGELF+LRL+RSAR+ FK S+F RMRKR+ARMLTVKRE
Sbjct: 65  EQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKRE 124

Query: 129 REIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEK 159
           REIEQG+ KRLSRKLD+ WK+SIVVRPPPSL+  +E+
Sbjct: 125 REIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161
[Close]
BLAST of Spo10493.1 vs. TAIR (Arabidopsis)
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 164.1 bits (414), Expect = 7.500e-41
Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = 1 

		  

Query: 22  STLLTKSSFHGLRLP---SVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNE 81
           S   T SSFHG+R+    S  + ++  +   +P  SVV+M K+E ELKE+R+KT EQL E
Sbjct: 21  SATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQE 80

Query: 82  EILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDK 141
           E++ LKGELFMLRLQ+SAR  FK SDF RM+K+VARMLTVKREREI++G+ KRLSRKLD+
Sbjct: 81  EVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDR 140

Query: 142 AWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
            WK+SIV RPPPSLKKLQE+  AE  AE A
Sbjct: 141 QWKKSIVPRPPPSLKKLQEEEAAEEAAEAA 170
The following BLAST results are available for this feature:
BLAST of Spo10493.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902206968|gb|KNA15596.1|3.5e-80100.hypothetical protein SOVF_0968... [more]
gi|731338849|ref|XP_010680537.1|1.4e-6081.7PREDICTED: 50S ribosomal prote... [more]
gi|359485888|ref|XP_003633349.1|1.3e-4267.3PREDICTED: 50S ribosomal prote... [more]
gi|731434995|ref|XP_010645220.1|1.1e-4166.6PREDICTED: 50S ribosomal prote... [more]
gi|565361224|ref|XP_006347357.1|7.1e-4158.9PREDICTED: 50S ribosomal prote... [more]
back to top
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R7W8_SPIOL2.4e-80100.Uncharacterized protein OS=Spi... [more]
A0A0J8C4P8_BETVU9.6e-6181.7Uncharacterized protein OS=Bet... [more]
F6I6Q6_VITVI9.0e-4367.3Putative uncharacterized prote... [more]
F6HWM0_VITVI7.6e-4266.6Putative uncharacterized prote... [more]
M1CK76_SOLTU5.0e-4158.9Uncharacterized protein OS=Sol... [more]
back to top
BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH1.3e-3962.050S ribosomal protein L29, chl... [more]
RK29_MAIZE1.0e-3152.250S ribosomal protein L29, chl... [more]
back to top
BLAST of Spo10493.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G65220.17.5e-4162.0Ribosomal L29 family protein [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29GENE3D1.10.287.310coord: 65..126
score: 3.0
IPR001854Ribosomal protein L29HAMAPMF_00374Ribosomal_L29coord: 58..122
score: 13
IPR001854Ribosomal protein L29PFAMPF00831Ribosomal_L29coord: 66..122
score: 7.9
IPR001854Ribosomal protein L29TIGRFAMsTIGR00012TIGR00012coord: 67..122
score: 3.4
IPR001854Ribosomal protein L29unknownSSF46561Ribosomal protein L29 (L29p)coord: 65..125
score: 2.35
NoneNo IPR availableunknownCoilCoilcoord: 153..168
score: -coord: 58..93
scor
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 6..165
score: 3.8
NoneNo IPR availablePANTHERPTHR10916:SF050S RIBOSOMAL PROTEIN L29, CHLOROPLASTICcoord: 6..165
score: 3.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010218 response to far red light
biological_process GO:0060003 copper ion export
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009555 pollen development
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006412 translation
biological_process GO:0009637 response to blue light
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006223 uracil salvage
biological_process GO:0044206 UMP salvage
biological_process GO:0032502 developmental process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0010190 cytochrome b6f complex assembly
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0009744 response to sucrose
biological_process GO:0009644 response to high light intensity
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009631 cold acclimation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0032259 methylation
biological_process GO:0030091 protein repair
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010114 response to red light
biological_process GO:0042793 plastid transcription
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0098542 defense response to other organism
biological_process GO:0046034 ATP metabolic process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0072330 monocarboxylic acid biosynthetic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:0046148 pigment biosynthetic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006397 mRNA processing
biological_process GO:0016556 mRNA modification
biological_process GO:0010155 regulation of proton transport
biological_process GO:0006144 purine nucleobase metabolic process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009536 plastid
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005618 cell wall
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0005524 ATP binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0004017 adenylate kinase activity
molecular_function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004845 uracil phosphoribosyltransferase activity
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
molecular_function GO:0070191 methionine-R-sulfoxide reductase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo260060.85Barchart | Table
Spo008720.84Barchart | Table
Spo203870.83Barchart | Table
Spo258170.80Barchart | Table
Spo233840.80Barchart | Table
Spo192880.80Barchart | Table
Spo273460.79Barchart | Table
Spo271630.78Barchart | Table
Spo300040.78Barchart | Table
Spo073060.76Barchart | Table
Spo091490.76Barchart | Table
Spo233630.76Barchart | Table
Spo051030.75Barchart | Table
Spo046530.75Barchart | Table
Spo240810.75Barchart | Table
Spo004050.75Barchart | Table
Spo079150.75Barchart | Table
Spo087150.74Barchart | Table
Spo237670.73Barchart | Table
Spo094580.73Barchart | Table
Spo117390.73Barchart | Table
Spo232490.73Barchart | Table
Spo088240.73Barchart | Table
Spo123020.73Barchart | Table
Spo229990.72Barchart | Table
Spo093350.72Barchart | Table
Spo153020.72Barchart | Table
Spo013050.72Barchart | Table
Spo269110.71Barchart | Table
Spo240160.71Barchart | Table
Spo181110.71Barchart | Table
Spo174910.71Barchart | Table
Spo169960.71Barchart | Table
Spo113690.71Barchart | Table
Spo218080.71Barchart | Table
Spo025730.71Barchart | Table
Spo147790.71Barchart | Table
Spo210200.70Barchart | Table
Spo149060.70Barchart | Table
Spo256920.70Barchart | Table
Spo194590.70Barchart | Table
Spo114460.70Barchart | Table
Spo095360.70Barchart | Table
Spo057330.69Barchart | Table
Spo011290.69Barchart | Table
Spo019540.69Barchart | Table
Spo031950.69Barchart | Table
Spo039060.69Barchart | Table
Spo060600.69Barchart | Table
Spo206400.69Barchart | Table
Spo213830.69Barchart | Table
Spo011010.68Barchart | Table
Spo169550.68Barchart | Table
Spo019230.68Barchart | Table
Spo257830.68Barchart | Table
Spo214460.67Barchart | Table
Spo266730.67Barchart | Table
Spo072970.67Barchart | Table
Spo006670.67Barchart | Table
Spo101060.66Barchart | Table
Spo109160.66Barchart | Table
Spo161150.66Barchart | Table
Spo160050.66Barchart | Table
Spo225300.66Barchart | Table
Spo131800.66Barchart | Table
Spo116880.66Barchart | Table
Spo115090.66Barchart | Table
Spo197650.66Barchart | Table
Spo030660.66Barchart | Table
Spo026960.66Barchart | Table
Spo014010.66Barchart | Table
Spo184000.66Barchart | Table
Spo142560.65Barchart | Table
Spo208490.65Barchart | Table
Spo251960.65Barchart | Table
Spo205210.65Barchart | Table
Spo056510.65Barchart | Table
Spo013220.65Barchart | Table