Spo06841 (gene) | SpinachBase

Overview


Name	Spo06841
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	short hypocotyl in white light1
Location	SpoScf_03288 : 14541 .. 18597 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCATCCTCCATTTCTCTCTCTTCACTTTCGTTCTTCCGATTACCCTATCATCATCTTCGACATCAACAGTTTCTCTCTCCTCCTCATCAACTCCATCTTCTCCGAACCATCCCCGCTCTTCAAGCTTCTCGACGAAGTTCCTCTCAGGTTTCCCTTTCTCTCTCTTAAAATCGTTTGATTCTAGAATTACCAATTTTATTTATTAATTATTCGAATTGGCAGAGTGATGAATTGATAAATGATCGCCGCAAATGGAGCCGATTCGATTTCGATGGATACGAAGACGATGACGACGAAGAAGATGAAGAAGACGAAGAAGAAGATCGAAGCTTGGATTTGTTAATTAGGTTTGTGGAAAATATCTTCAGAAAGGTCTCCAAACGAGCTCGTAAAGCTGTGAGATCAGTTCTTCCTATTGCTATCTCCACCAAATTGGTGCGTTTTTCGTCGCTTTGTTTCAATTTCAATGCTATTGTCGAATTTTACATTTCAATTGTTTGTTCAATATCTTTTGGCTGCTCAATTTGCGTCGAAATTTAAAGAAATTGCTTTTGGTTAAGGCGTCAAATTAGTTCATTTCATTTTAGAGGCAACTAATTCCAATTTTGATCCAACATTGTCAGAAAAGTTCTACTTGTGTAGTTGATAGATGGCAAGGTTACTAATTGATGATTCATATTGATATCAGCCAAAATTTTGTACTTGTTTTTGAAATTTCAGTAGCTGTTTTGGTATGTTGTAAATAAGTCATGGTTTATTGGCATTTTGTTAGTTTCACAGAGTTCCTCAAGGGGGGGTGAATTGATATTTTACGGTTTTATAAAATTAAACGATTAGGAACAGAAACAGTAAAAGATGCAAGCGAAATTTAGCGAAAACTCTCTAGGCCCAATAGAGAGGAAAAAACCACGACCCCTTTGGGGACTTAAACACATTCACCAATTAGGCAAAACAACTCAGTTTTACAAACCTAATCTACTCGGGCCACAATCTGTGAATCGCCTCACAGATCTCTCGTGAGATCTTCTCTCTTGCTCAAGTAAGCCTGACTCATATATGGGAACAGGAACAGACTCTAAAAATTAAGACTTTAAGGTGATACCTGAAAGCTCCGGATTAATGCTAATAAGTCTGATGAATCTTTTCGTGAAGAACTTGAGGTTTATTTATATGATTCTAAGTGTTTAACCTAGAAACCCTAGATTCTAATTCAACACTAATTAGGACTCTTTTAAAAGATAGATTTTTACAAATAAATTGTTAAAACGCGTTTTGGTAAAAATCAATCTCTACGATTATAAGAGTTGTAGAGCAACTCAAATTCTCAAGAGTATAACCTCAAGTAGGATAGTAAATTCAGTTTAAGCTCGACTTATCCTTTTGGAAAACAAAACCGAATTACTTTTGGTTTAAGATACGAATTTGACTAAACAAACAAATCTTGACTTGACCTTTACGAAAGACTCTGTTCCCATACTAAGCAATATCTTAACTACATTGGTCTTATACCTTTCGTGTTTATAAGACTTCCTAAGCTTCACACTTCTTGATCCTCGATTTAATCTTTCCATAAGCCTTTGACTCGATTTCTTCATAGCTCCTCAGCTGACTTCTTCATCTGCGTTTCACACCACGAACACTGTGGACTTATAGTGACCTGTTCCTGACATTCCTTAGATAACAGTCGTAAGTATAGTTTAAGCTTGTCACCATCAAAACCCAGGAATCAACACATTTCCTGTCATGTATAAATATGTACTTCGTGGGTCTCTAACATGTATAAATAAGTATTATCTTGTTGTTGGCGTTTCCTGTCATGTATTATCTTGGTTTTGGGTTGAAGATAATTACAGTAGTCCTTTGTGTTAGTTTCAATCGATTTGATTATGATTTTGAAGGATTTAATTTATCTTGCTTTTAATGTTGCTTTTCGTGTTTAATAGGTGGGTTTTGCTGTCAATGGACTGATAATTTTATCATTTTTGTGGGTCTTGAAGGCTTTTCTTGAGGTAATGGAACAATTTCACAAATTTGAAATGCATTTATGTATATTTTGTCATCTCACTTGTGTTGTCTGCCGTACACACGGTACATTCCCATGGCTGCTGATGTTTCTCAAACTTGTGAACCTAGCTAATGTTAGAGACTTAGAGGAAGATTGCTCGATGAATTGTTTCACCCTTATTAACCATCATTTATTTACAGCGATGTGTCACACTTATTTTTTTTTTCTACACTGGAAAAATAGATATTTAGTGTGATCTCTGTCATGAAATGGATCATTTAGTGATGTCAATTAGATCTTACAGAATACAAACTTGTAGTTTATAGTTGACAGTTAAAAGAGGGGGGATCGTTAGATGATTTCTTGACTGCATGACTTGTTTGTCAAAAAGAGCCAGACAAATCCACTTGTTTGGTCCAATACTGTTTAGCAAACTCAAGATATTATCGGCCCGTTTAGTAGCCGGTAATAAACGGTGGGAATGAAAATAAATTTAAGTGTTATTTGACAAGAAAACAACATCATAATGTCTATGGTAATGAAGCTTTATCTCAAACTTGGTGTTTTTCTTCATAAATTTGCATTCCAACCCAATACCACTCCCCCAAATGGTAATGGGTGGTAATGAACATTAATGAAGAAAATGAGATAATTTTGAATGAACTAGCATTAGCATGGGAATGGATATTGATTTTTCTTACAAATTTACATACAAATTCATTCCCATTGCACCATTTATAGCCGGTTATCAAACGGGCCGATATATAAGAAACCATGGACTTTGGTAATGATATTGATACTCCAAGTTTACCTATAATACCACGGTATTCAGCAGAAACCTTACCGTCAGGAAAAGAGGCAACCTTCGCTTAAGCGACTACGTACGTGATGAAACCCTTGAGCTTTTACTATACTATCTTTTTGCTTCTTCTTGCTAGCTTACTCAGCGCTTGAATGGATCGCTACTAGTTGAACAATAGCAGCCCCTGTGTTAGGAACTCCATATGCTGTTAAACAAGCTTGAGCTGCCATAGGTTTAGGATTTAGAGCTTGCTTTAGCAGCAGGTAAGGATTTCAAAACAGGCTTTAATCCTTCGGCCATAGCTTGTCTAGCATGGTCTGGCCTTTCTCCATTCCTTAAGCTTCGCTTAAACGATTATATTCCTTTCCTTACCATTCCTTAGCAGCTTTAGCAACTTGAACTGACTATCTGGTCTAGCAAACTGAGCTATGCTAGACTAAACAGACTGATGACCGATGTAGGTTCTTACAACTTAAAGGCAAACTGTTGATACAAAGCACAGAAACTCTTCAGGCGTCTATTTGAATTACCTGGAAACTGTTAACATGTGCTTCAAATGAGAAGTGCTGCAGCAGGTTTGAACTAATTAGAACCTCAATTGACCAAGAACTAGAAAGGTCATCTTAGGGGCTAGCTAGCGATAAACTGCATGCTTTCCCTGAACTTGGTCTTAATTGTGACCTGTTGTATCTTATATGCCTTTCCTTGTTTCCTTCATAGAAAAAAAGGAGACATATTGAGGCTTCCACTTCGAACAGTTCTTCACCAAATTGTTATGTGCATGTTCTGCATGACACAATTGTTATGTGCATGTTCTGCATGACACACAAATCCATCTTGCGTGCAGGTTTTTGGTCCAACCATGGTGCAATGAAATTGTATGCTTGTTAGCAAGTTCCATATACTGTCACTAATATGGGCTGAATAAAGAAAAGAAGATCAAGAACTATGTTTGAATTGGATTTGTAATGCTTTATACTTGTCATGCTCTCATGGTTGCATGCAATGCTTTTTTTTTTTAAGGAAAATGCAGTTATTTCATCTGCCATTCGTTCTTTGAATAGTTTCTTCACTTCAAAATGCAGGTCATTTGTACTCTCGGAAGTGCAGTGTTCGTGAGCATTTTACTTATCCGTGGGGTATGGTCTGCTGTATTATACTTGCAAGAAGGTCGCAGCCGTCATATGAACGGAATTGATGATGATGATCCACCTTCATGGAGCAGAGCACAGCCCGTAACCTGA

mRNA sequence

ATGGCGGCATCCTCCATTTCTCTCTCTTCACTTTCGTTCTTCCGATTACCCTATCATCATCTTCGACATCAACAGTTTCTCTCTCCTCCTCATCAACTCCATCTTCTCCGAACCATCCCCGCTCTTCAAGCTTCTCGACGAAGTTCCTCTCAGAGTGATGAATTGATAAATGATCGCCGCAAATGGAGCCGATTCGATTTCGATGGATACGAAGACGATGACGACGAAGAAGATGAAGAAGACGAAGAAGAAGATCGAAGCTTGGATTTGTTAATTAGGTTTGTGGAAAATATCTTCAGAAAGGTCTCCAAACGAGCTCGTAAAGCTGTGAGATCAGTTCTTCCTATTGCTATCTCCACCAAATTGGTGGGTTTTGCTGTCAATGGACTGATAATTTTATCATTTTTGTGGGTCTTGAAGGCTTTTCTTGAGGTCATTTGTACTCTCGGAAGTGCAGTGTTCGTGAGCATTTTACTTATCCGTGGGGTATGGTCTGCTGTATTATACTTGCAAGAAGGTCGCAGCCGTCATATGAACGGAATTGATGATGATGATCCACCTTCATGGAGCAGAGCACAGCCCGTAACCTGA

Coding sequence (CDS)

ATGGCGGCATCCTCCATTTCTCTCTCTTCACTTTCGTTCTTCCGATTACCCTATCATCATCTTCGACATCAACAGTTTCTCTCTCCTCCTCATCAACTCCATCTTCTCCGAACCATCCCCGCTCTTCAAGCTTCTCGACGAAGTTCCTCTCAGAGTGATGAATTGATAAATGATCGCCGCAAATGGAGCCGATTCGATTTCGATGGATACGAAGACGATGACGACGAAGAAGATGAAGAAGACGAAGAAGAAGATCGAAGCTTGGATTTGTTAATTAGGTTTGTGGAAAATATCTTCAGAAAGGTCTCCAAACGAGCTCGTAAAGCTGTGAGATCAGTTCTTCCTATTGCTATCTCCACCAAATTGGTGGGTTTTGCTGTCAATGGACTGATAATTTTATCATTTTTGTGGGTCTTGAAGGCTTTTCTTGAGGTCATTTGTACTCTCGGAAGTGCAGTGTTCGTGAGCATTTTACTTATCCGTGGGGTATGGTCTGCTGTATTATACTTGCAAGAAGGTCGCAGCCGTCATATGAACGGAATTGATGATGATGATCCACCTTCATGGAGCAGAGCACAGCCCGTAACCTGA

Protein sequence

MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRRKWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNGIDDDDPPSWSRAQPVT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06841.1	Spo06841.1	mRNA

Homology

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BLAST of Spo06841.1 vs. NCBI nr
Match: gi|902182609|gb|KNA09957.1| (hypothetical protein SOVF_148810 [Spinacia oleracea])

HSP 1 Score: 369.0 bits (946), Expect = 5.100e-99
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1

		  
Query: 1   MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR 60
           MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR
Sbjct: 1   MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR 60

Query: 61  KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST 120
           KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST
Sbjct: 61  KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST 120

Query: 121 KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG 180
           KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG
Sbjct: 121 KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG 180

Query: 181 IDDDDPPSWSRAQPVT 197
           IDDDDPPSWSRAQPVT
Sbjct: 181 IDDDDPPSWSRAQPVT 196

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BLAST of Spo06841.1 vs. NCBI nr
Match: gi|731359926|ref|XP_010691538.1| (PREDICTED: uncharacterized protein LOC104904841 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 285.4 bits (729), Expect = 7.400e-74
Identity = 162/203 (79.80%), Postives = 178/203 (87.68%), Query Frame = 1

		  
Query: 1   MAASSISLSSLSFFRLPYHHLRH--QQFLSPPH---QLHLLRTIPALQASRRSSSQ-SDE 60
           MAASSISLSSLSF R  +HH +H  Q   + PH   QLHLLRT PALQASRRSS Q +DE
Sbjct: 1   MAASSISLSSLSFSRSHHHHHQHHLQHLFASPHPLLQLHLLRTFPALQASRRSSPQENDE 60

Query: 61  LINDRRKWSRFDFDGYEDDD-DEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSV 120
           LIND RKWS+F+FDGY+DD+ D+E+EEDEEEDRSLDLL+RFVENIFRKVSKRARKAVRSV
Sbjct: 61  LINDSRKWSQFNFDGYDDDEYDDEEEEDEEEDRSLDLLMRFVENIFRKVSKRARKAVRSV 120

Query: 121 LPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEG 180
           LP+AISTKLVGFAVNGLIILSFLWVLKAFLEVICTLG+ VFVSILLIRGVWS VLYLQEG
Sbjct: 121 LPLAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGTVVFVSILLIRGVWSGVLYLQEG 180

Query: 181 RSRHMNGIDDDDPPSWSRAQPVT 197
           R R +NG DDDD  +W+RAQPVT
Sbjct: 181 RGRPINGFDDDDQSAWTRAQPVT 203

[Close]

BLAST of Spo06841.1 vs. NCBI nr
Match: gi|778724801|ref|XP_004136931.2| (PREDICTED: uncharacterized protein LOC101213497 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.800e-44
Identity = 114/201 (56.72%), Postives = 149/201 (74.13%), Query Frame = 1

		  
Query: 8   LSSLSFFRLPYHHLRHQQFLSPP-----HQLHLLRTIPALQASRRSSSQS---DELINDR 67
           LS  S F +P   L    F + P     H +H+  T+  L+A+RR+S+ S   D  ++DR
Sbjct: 7   LSPPSLFSIPQSQL---PFSTSPTSLLSHPIHISYTL--LRATRRTSNFSQGVDNFVDDR 66

Query: 68  RKWSRFDFD---GYEDDDDEEDE-EDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLP 127
           R W+R DFD   G E++++EEDE E++EEDRSLDLL+RFVENIFRK S+RARKAVRSVLP
Sbjct: 67  RNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 126

Query: 128 IAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRS 187
            +I TKLV F+VNG+++L+FLWVLKAFLEVICTLG+AVFVSIL+IRGVW  +LYLQ+ RS
Sbjct: 127 PSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRS 186

Query: 188 RHMNGIDDDDPPSWSRAQPVT 197
             +  +DDD   +W+ AQP +
Sbjct: 187 HRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of Spo06841.1 vs. NCBI nr
Match: gi|694414246|ref|XP_009335351.1| (PREDICTED: uncharacterized protein LOC103928066 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 185.3 bits (469), Expect = 1.000e-43
Identity = 111/215 (51.63%), Postives = 149/215 (69.30%), Query Frame = 1

		  
Query: 3   ASSISLSSLSFFRLPYHHLRHQQFLSPPHQLH-------LLRTIPALQASRR-----SSS 62
           ++++S  SLS+F   +HH  HQQ L  PH L+       L       QASRR        
Sbjct: 4   SATLSSPSLSYFPQAHHH--HQQQLHLPHTLNPYLKPKTLTLQFQCPQASRRPPNYPQGG 63

Query: 63  QSDELINDRRKWSR---------FDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRK 122
            +D L +D R W R         +DF+  +DDD+E+DE+DEEEDRSLDLL+RFV+N+F+K
Sbjct: 64  SADSLADDPRNWGRSINSEVDRRYDFED-DDDDNEDDEDDEEEDRSLDLLVRFVQNVFKK 123

Query: 123 VSKRARKAVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIR 182
           VS+RAR+AVRSVLP++I T LVGF+VNG+++L+FLW LKAFLEV+CTLGS VF+SILLIR
Sbjct: 124 VSRRARRAVRSVLPVSIPTNLVGFSVNGVLMLAFLWFLKAFLEVVCTLGSLVFLSILLIR 183

Query: 183 GVWSAVLYLQEGRSRHMNGIDDDDPPSWSRAQPVT 197
           G+W+ V Y Q+ R++     +DD+ P W+ AQPVT
Sbjct: 184 GIWTGVAYYQDNRNQKYRNFEDDNRP-WAGAQPVT 214

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BLAST of Spo06841.1 vs. NCBI nr
Match: gi|702391610|ref|XP_010065857.1| (PREDICTED: uncharacterized protein LOC104453056 [Eucalyptus grandis])

HSP 1 Score: 184.9 bits (468), Expect = 1.400e-43
Identity = 105/161 (65.22%), Postives = 126/161 (78.26%), Query Frame = 1

		  
Query: 42  LQASRRSSSQSDE------LINDRRKWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFV 101
           L+ASRR +S   +      L+ D R WSR     Y DDDD ED  DE+EDRSLDLL+RFV
Sbjct: 50  LRASRRRASGFPQGGGGGNLVGDARNWSRAINSVYGDDDDHEDGSDEDEDRSLDLLVRFV 109

Query: 102 ENIFRKVSKRARKAVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFV 161
           +N+FRKVS++ARKAVRSVLP++IST+LV F+VNG++IL+FLWVLKAFLEV+CTLGS VFV
Sbjct: 110 QNVFRKVSRKARKAVRSVLPVSISTQLVNFSVNGVLILAFLWVLKAFLEVVCTLGSIVFV 169

Query: 162 SILLIRGVWSAVLYLQEGRSRHMNGIDDDDPPSWSRAQPVT 197
           SILLIRGVWS V Y+QE R+  MN  DDD   +WS AQPVT
Sbjct: 170 SILLIRGVWSGVTYMQENRTYKMNEADDDH-RAWSGAQPVT 209

[Close]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRN1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148810 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.600e-99
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1

		  
Query: 1   MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR 60
           MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR
Sbjct: 1   MAASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRR 60

Query: 61  KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST 120
           KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST
Sbjct: 61  KWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLPIAIST 120

Query: 121 KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG 180
           KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG
Sbjct: 121 KLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRSRHMNG 180

Query: 181 IDDDDPPSWSRAQPVT 197
           IDDDDPPSWSRAQPVT
Sbjct: 181 IDDDDPPSWSRAQPVT 196

[Close]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHX9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g222710 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.200e-74
Identity = 162/203 (79.80%), Postives = 178/203 (87.68%), Query Frame = 1

		  
Query: 1   MAASSISLSSLSFFRLPYHHLRH--QQFLSPPH---QLHLLRTIPALQASRRSSSQ-SDE 60
           MAASSISLSSLSF R  +HH +H  Q   + PH   QLHLLRT PALQASRRSS Q +DE
Sbjct: 1   MAASSISLSSLSFSRSHHHHHQHHLQHLFASPHPLLQLHLLRTFPALQASRRSSPQENDE 60

Query: 61  LINDRRKWSRFDFDGYEDDD-DEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSV 120
           LIND RKWS+F+FDGY+DD+ D+E+EEDEEEDRSLDLL+RFVENIFRKVSKRARKAVRSV
Sbjct: 61  LINDSRKWSQFNFDGYDDDEYDDEEEEDEEEDRSLDLLMRFVENIFRKVSKRARKAVRSV 120

Query: 121 LPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEG 180
           LP+AISTKLVGFAVNGLIILSFLWVLKAFLEVICTLG+ VFVSILLIRGVWS VLYLQEG
Sbjct: 121 LPLAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGTVVFVSILLIRGVWSGVLYLQEG 180

Query: 181 RSRHMNGIDDDDPPSWSRAQPVT 197
           R R +NG DDDD  +W+RAQPVT
Sbjct: 181 RGRPINGFDDDDQSAWTRAQPVT 203

[Close]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K2W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.900e-44
Identity = 114/201 (56.72%), Postives = 149/201 (74.13%), Query Frame = 1

		  
Query: 8   LSSLSFFRLPYHHLRHQQFLSPP-----HQLHLLRTIPALQASRRSSSQS---DELINDR 67
           LS  S F +P   L    F + P     H +H+  T+  L+A+RR+S+ S   D  ++DR
Sbjct: 7   LSPPSLFSIPQSQL---PFSTSPTSLLSHPIHISYTL--LRATRRTSNFSQGVDNFVDDR 66

Query: 68  RKWSRFDFD---GYEDDDDEEDE-EDEEEDRSLDLLIRFVENIFRKVSKRARKAVRSVLP 127
           R W+R DFD   G E++++EEDE E++EEDRSLDLL+RFVENIFRK S+RARKAVRSVLP
Sbjct: 67  RNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVLP 126

Query: 128 IAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVLYLQEGRS 187
            +I TKLV F+VNG+++L+FLWVLKAFLEVICTLG+AVFVSIL+IRGVW  +LYLQ+ RS
Sbjct: 127 PSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRS 186

Query: 188 RHMNGIDDDDPPSWSRAQPVT 197
             +  +DDD   +W+ AQP +
Sbjct: 187 HRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Match: A0A059BD06_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01187 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.500e-44
Identity = 105/161 (65.22%), Postives = 126/161 (78.26%), Query Frame = 1

		  
Query: 42  LQASRRSSSQSDE------LINDRRKWSRFDFDGYEDDDDEEDEEDEEEDRSLDLLIRFV 101
           L+ASRR +S   +      L+ D R WSR     Y DDDD ED  DE+EDRSLDLL+RFV
Sbjct: 50  LRASRRRASGFPQGGGGGNLVGDARNWSRAINSVYGDDDDHEDGSDEDEDRSLDLLVRFV 109

Query: 102 ENIFRKVSKRARKAVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFV 161
           +N+FRKVS++ARKAVRSVLP++IST+LV F+VNG++IL+FLWVLKAFLEV+CTLGS VFV
Sbjct: 110 QNVFRKVSRKARKAVRSVLPVSISTQLVNFSVNGVLILAFLWVLKAFLEVVCTLGSIVFV 169

Query: 162 SILLIRGVWSAVLYLQEGRSRHMNGIDDDDPPSWSRAQPVT 197
           SILLIRGVWS V Y+QE R+  MN  DDD   +WS AQPVT
Sbjct: 170 SILLIRGVWSGVTYMQENRTYKMNEADDDH-RAWSGAQPVT 209

[Close]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Match: W9QZQ9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003354 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.300e-42
Identity = 104/162 (64.20%), Postives = 130/162 (80.25%), Query Frame = 1

		  
Query: 42  LQASRRSSS---QSDELINDRRKWSR-FDF---DGYEDDDDEEDEEDEEEDRSLDLLIRF 101
           LQASRR  +   ++  L +D R WSR  +F   D  EDDD+E+D EDEEEDRSLDLLI+F
Sbjct: 45  LQASRRVINFPQENGHLADDPRNWSRSIEFGRRDDGEDDDEEDDGEDEEEDRSLDLLIKF 104

Query: 102 VENIFRKVSKRARKAVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVF 161
           V+N+F+KVS+RAR+AVRSVLPI I TKL+GF+VNG++IL+FLWVLKAFLEV+CTLGS VF
Sbjct: 105 VQNVFKKVSRRARRAVRSVLPIGIPTKLIGFSVNGVLILAFLWVLKAFLEVVCTLGSIVF 164

Query: 162 VSILLIRGVWSAVLYLQEGRSRHMNGIDDDDPPSWSRAQPVT 197
           VSILLIRGVW+ V+YLQE RS  +N  +D++   W+ AQP T
Sbjct: 165 VSILLIRGVWTGVIYLQENRSMKVNEFEDEN-NVWNGAQPAT 205

[Close]

BLAST of Spo06841.1 vs. TAIR (Arabidopsis)
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 171.0 bits (432), Expect = 7.200e-43
Identity = 112/208 (53.85%), Postives = 144/208 (69.23%), Query Frame = 1

		  
Query: 2   AASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRT----IPALQASRRSS---SQSDE 61
           A+ S   SS++  R P        F+  P  L   RT     P L ASRRS    +  D+
Sbjct: 5   ASISSPSSSVALLRSPLSF-----FIFTPKTLIFTRTRISGFPYL-ASRRSRDFINGRDD 64

Query: 62  LINDRRKWSR-----FDFDGYEDDDDEEDEED-EEEDRSLDLLIRFVENIFRKVSKRARK 121
             +D R W+R     + FD  ED D EED++D EEEDRSLDLL+RFVEN+FRK+SKRARK
Sbjct: 65  FADDTRSWNRKIKPEYGFD--EDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARK 124

Query: 122 AVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVL 181
           AVRS+LP++ISTKLVGF+VNG++IL+FLW+LKAFLEV CTLG+ VF SILLIRG+W+ V 
Sbjct: 125 AVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVA 184

Query: 182 YLQEGRSRHMNGIDDDDPPSWSRAQPVT 197
           Y+QE R+  +N +  DDP +W+  QPV+
Sbjct: 185 YMQESRNNRINEL-ADDPRAWNGMQPVS 203

[Close]

BLAST of Spo06841.1 vs. TAIR (Arabidopsis)
Match: AT1G69935.1 (short hypocotyl in white light1)

HSP 1 Score: 95.1 bits (235), Expect = 5.000e-20
Identity = 75/183 (40.98%), Postives = 104/183 (56.83%), Query Frame = 1

		  
Query: 3   ASSISLSSLSFFRLPYHHLRHQQFLSPPHQLHLLRTIPALQASRRSSSQSDELINDRRKW 62
           +SS S  SL+     +  +    F S  + + L R    L  S  SSS      + RR++
Sbjct: 9   SSSSSSPSLTLINASHRFVSVTPFSS--NSIFLRRRFRRLNRSLASSSS-----HSRRRY 68

Query: 63  S---RF-----------DFDGYEDDDDEEDEEDEEEDRSLDLLIRFVENIFRKVSKRARK 122
               RF           D DG+ DDDDEE    +E + S+DLLIRF+ ++F+KVSKR +K
Sbjct: 69  ESDDRFFGGGDNYDVVPDDDGFSDDDDEE----DERESSVDLLIRFLRSMFKKVSKRTKK 128

Query: 123 AVRSVLPIAISTKLVGFAVNGLIILSFLWVLKAFLEVICTLGSAVFVSILLIRGVWSAVL 172
           A R +LP A+S +LV FAV+G+++L  L + +AFLEVIC LG  VF  ILLIR  W+A  
Sbjct: 129 ASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLEVICNLGGTVFTVILLIRLFWAAAS 180

The following BLAST results are available for this feature:

BLAST of Spo06841.1 vs. NCBI nr
BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
BLAST of Spo06841.1 vs. ExPASy Swiss-Prot
BLAST of Spo06841.1 vs. TAIR (Arabidopsis)

BLAST of Spo06841.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902182609\|gb\|KNA09957.1\|	5.1e-99	100.	hypothetical protein SOVF_1488...	[more]
gi\|731359926\|ref\|XP_010691538.1\|	7.4e-74	79.8	PREDICTED: uncharacterized pro...	[more]
gi\|778724801\|ref\|XP_004136931.2\|	2.8e-44	56.7	PREDICTED: uncharacterized pro...	[more]
gi\|694414246\|ref\|XP_009335351.1\|	1.0e-43	51.6	PREDICTED: uncharacterized pro...	[more]
gi\|702391610\|ref\|XP_010065857.1\|	1.4e-43	65.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo06841.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QRN1_SPIOL	3.6e-99	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BHX9_BETVU	5.2e-74	79.8	Uncharacterized protein OS=Bet...	[more]
A0A0A0K2W4_CUCSA	1.9e-44	56.7	Uncharacterized protein OS=Cuc...	[more]
A0A059BD06_EUCGR	9.5e-44	65.2	Uncharacterized protein OS=Euc...	[more]
W9QZQ9_9ROSA	2.3e-42	64.2	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo06841.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo06841.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT4G33780.1	7.2e-43	53.8	FUNCTIONS IN: molecular_functi...	[more]
AT1G69935.1	5.0e-20	40.9	short hypocotyl in white light...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35474	FAMILY NOT NAMED	coord: 5..196 score: 8.1
None	No IPR available	PANTHER	PTHR35474:SF1	SUBFAMILY NOT NAMED	coord: 5..196 score: 8.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009657	plastid organization
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009295	nucleoid
molecular_function	GO:0016301	kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo19872	0.91	Barchart \| Table
Spo00194	0.72	Barchart \| Table
Spo06475	0.72	Barchart \| Table
Spo01116	0.71	Barchart \| Table
Spo18272	0.71	Barchart \| Table
Spo06697	0.71	Barchart \| Table
Spo07195	0.69	Barchart \| Table
Spo02279	0.69	Barchart \| Table
Spo23225	0.68	Barchart \| Table
Spo15333	0.66	Barchart \| Table
Spo05898	0.66	Barchart \| Table
Spo09751	0.66	Barchart \| Table
Spo25420	0.66	Barchart \| Table
Spo27130	0.66	Barchart \| Table
Spo22434	0.65	Barchart \| Table
Spo23078	0.65	Barchart \| Table
Spo13030	0.65	Barchart \| Table
Spo23404	0.65	Barchart \| Table
Spo28082	0.65	Barchart \| Table
Spo14473	0.65	Barchart \| Table
Spo20891	0.65	Barchart \| Table