Spo07206 (gene) | SpinachBase

Overview


Name	Spo07206
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L4
Location	SpoScf_03327 : 4295 .. 11868 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAAACCATCTCAGATCCGGATGAAAGTAAAAGGTTGGGACTGGGAGTAGCAAACATTGACCCAAAGGGCAACCATCTCGGCCTTGACTGAAAGCCCAAACATTGGAACTTGAAATAATAACAAAAAAAAAAGAGACACTCTGCACTTCAAAACTCTTAAACCCATAAACCCAGACAAGCGAAGCAGGTCTGAGAGTGTTTTCCATGGCGAAAAGGATCTTGGCTTCCCTCCACCACCATTTGCTCCGCCCTCATGCTCATCTTCCTTCCCTCGTATGTTTCTTCTCTCCTCCTTTCTCATGTATTTTCTTATCTTCCCCTTAAATCCCCTCTCTCAAAATAGTTGGAATTAATGGTACAGGGTAATGACAAAGAATACTATTTGACACACTTCAGTCGAACTGTTTATGGGTTTTTAGTTAAATTAATATATAATTTTTTTTATGGGAAATGATTAGTTTGATAACTTTGGGGGAAAAATGTTCAGATTATGATTCTAGGTTACAATTTTTTTTTAGTTTATTATGGGGTTTGTGTTAAATTAGGTATAATTAGTTCAACACATGATTAATTAGACAAAAATTTTTGGAGAAATGTTCAGTTTATGATTCTTGGTTTTGCATAACATGTGGTATATCAAAATTAAGCTTCTGAGTTTTTTTGGAATCATGAACATCTTTTTCTTCAGTAACTGTACTGTTAATATAACTTTATTAATGTGTATTAACTTTTCTGGGTTTTGATTGAACAGGGTGTTTCATGTAGTAGACTAATTTCAACAACCACTGTGACTTCAAATTCAAGTAATGATGAAATCCCATCTGATTTACTTATGCCCAAGAAAACTGCTTTCATTCCAGATCGTAATCAAGGTATGTGGTTTGGGGCAGAATTATTTTGCAATGTTTACCAATATAGCATCTATGACTATATAACTGTTGGAAAAGGCACGCTGACATTTCCAAAACTATGTTAACTTGACATTTTCATGTTGTTTCGAATGCTCATTTCGATTTTTATGCTTAACAGTTCATACGGGACTAAACTTGCAAGCTTTTCATAGAATGGTATAGTCTGACACATAGGCATGCACATATATTCAAGACGGGTGGCCGACAGTCGGCTAATTGTAGCTCAGAGCTTATGAGCTTATGGCATCATTAATAACACATTGATGTTAGTGAATGCTTTCCTAGACCCCCGCCCCCCTGCATTTCTCAATCCTCCGTAAAATGTCATAAAACATTAAATTTTAGCTAAAAAGCATCAGTTATAAGTTTAGCTCAACATCAATGTCGAGAGAAAAAAAATTATCTGCCACATCACAATAGTTTTAAGCTGAACTTCATGCAAGATACCATGTGACAGAAATTGGTAACAGCCGAGCCATATGCCGGATCAGTTGTTTCTAGTAATTGAAAAAAATGGAGTATCCAACTTAGCGTAGAGGGACCTGACTGGCCATTATTTCGATCCCTGTTGTTGTATAGCAGTACTAATGGGCCAGTGTATTTGAATACAATATCAACTGAAATGGCAGGCGTATTGGAAGCATGCAAGCATAGAAAACCCACAATTGAGCTTATCACATCTATTGGGGTTACTGTCACTAATCATATGAAATATTCAGGCAAACTAATAGTCGCGGATTCGAACTTCAAAGATAAGAATTATTGATACATACCTTTTAAAGTACTTAGTAGATTTTAAGGAATCCTAGCTATAAACTCTGACCCAAAACCCTATCAAACAATGTAAGGATTTTGGAGCGACACAATCTAATATTACGTATCCCATAACTGTCTAAACATTTACCAACCCTTATATGCCGCCCTAAAGAGTAAGTAAAAGAACCTAGTAGTAATAAACTCTCTTACGCTTTGTTTGGGTAGCAAGATAGAAGGGAAGAAGGAGAGGGAAAGAGGAGGAAGGGGAGGGGTAAAGAGAGGGAGGGGGAAGGCTAATCTCCATTTTCATCCAAATCCCTTCAATTTTGGAGGGGTGGTTTTTATTAAAGAGGGATCTTGTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTTCCCCCCCCCCCCTCCCTTTCTCTCCATCTTTCTTATCCATACCATGTGTATATATCCTCACTTATCAAAGAAATAATAATAATGAACCGCGATGATCTTGCATCGCATCACGAGGTATGATCAGTAAATAATGGCCGACGTCCATTTAAGATGAACGCAACAATCTTTGGTACTAAAATATTGCTACTAAACTACGTACAGTACACTTCTTTATTAATATTAGTTAGAATGTGACCCCTATTGATACCAATATGTGACCCTTGGCCCATAAGTACCTACAATACTATACCACACTAATTAGTACCAATAGTGGTCGCTTGAGTCCAAAATGGACGCCAACCACTTGTGTCAAAGACTCAACGACTTCCTCATCACATCACACCATGCAATGCTAAACTTTCAAATCTGCCTAAGTTAACCCAGTTTCCAAATACAACAATTGGCTCACAAAAGCCACAAACACCTCAGAATTGCTTCTCTTATTTTCCTTTCTTTCTTGTCATCAGAATCGACGTTCTGACAGAAAATACAACCAAATTAAGCATAGTTAAAAACAATAACTTATAAGTTAAAAATCTAAGTCTGAAACACGAAAATCAAAATCCATCTATCCATCACACACATTCCTACACCCCCTGGCATAATCATTCATAGCCTACTAATTGTTTGAACCTGTTTTTTTTATTCTAATAATTTCCGTCAGAGAATATAAATAATCATGTTCAACAATGGTGGGAAGCAACTCGAATGCATGACTGACGTTTCAATTTAGGTGATTAGTCAAGAATAGCTTTTCAGGTTTTGGATCAAATACTTGAAAGTAAACTTATACTTGGTGAAAATAACAATTATTGCCACTAATTGTGGAGAGATAATTAACACACACAACAAAAAATGAAAAAGATCCTAAATGACACAGTTTAAAACAACAAATAAAAAACATAACTCATTAAATCATCAAATTTAAGCATCACTTTTCACTCTTTATTTTTTGTGGGGATATCACTTTCCACCTACGAAGTAATCACATATTCACACAAATGAACAAAAGAAATTAACTAATTAGTGGCACTACATTCTCAACTTTGAGTGTTTACAATTATCTTCACAGTTACATTTTCCTTGAACCTAGCAATTAATACTTATTAGAGGAGGTCAATTACCTTTTAGATAAATATCATTGTCTTTATTCATTTTTCCCATTACTTCCATTCAAATTCCAATTAACCTTGTCCCTTCAAAAAAAGAAATACTCCATTGTTTTTAGGAACAAAGAAAAATCAGTATGAACAGATGCACTTATATTAAAAAAACCTACTAAAAAAATAGTGGCGGAATAAGGCCCACCCACATAAATAAATTGCAAGATGTAAATGAGCAGTTTACATGATTTAAATTAAATAAAAACAGAAAAAAAAAGGCATAATAAAATCATGACACCGCCAAAAATCATACCAGGTTTAAAAGAAGCAATCTGTCATTAACTTTTTTTCACCATGTTTCGTCACCCTTGATTATGAGGAGAGAGAGAGCGGGAATATGATTAGTGAAAGTGAAGAGGTGAAAATGAAGTGGAAAGGAAGGGGAGCAGTCAAATTTGTTTACAATGAATTTGTTTACAATCATTCCAACTTTCAGTGAAAGAGTGTGAAGTGGTGTATAAAAAAGCGCAAAGCGCAGTAAAGCGATATGAGTCCTAGAGCCTAAGCGCAAGAGTAAGGCGCGTGCTTGATCGTAGTGAAACACACTTTTTAAGAATTAAAGGTTTTTTTACTGTTATGCATATATATCTTACTACAATAACCACAAAAATATATAAACATCCAATTTGCTTCCAAAATATATTACTCTTTGTTTTAACAAAACTAAAGCATATAACATAGTGTTTATCAAGAAACTAGGGCCGGCTGCTGTGAGTCCTGTGACTGTTATCTTCTTATTTTCTTATTTTCCCTTTTCTTTTGGACATTTGGACCACTTTCTGTTGTTAAGGATTAATAGGGTGTAGTCCAAAACACAATAACAATATATAAAAAAAGCTGTCAACGTAAAGTAACAAAAATAATAAAGAATTTCAATGAAGCGCCAAAAAGTGCGCCTTTTGCGCTTCATGCGCTTAAGCGCACCCGCTTTGTCCTATAGCTTGGCGCTTCAGCGCGCTTTTTTAAACACTGGTGTGAAGTAAGTATGTAAGATACTTTTTTTAATGAAAAAGACTGAGAGTACAGCTCATGTTTCTAAAGAAAAGGCCAAAAGGGAGTAGTCATCAGTCGCAGTTGAGGAAGGAAACCACAGTAAGCAAAAGATGTTAGTGTGGGAAAACAATTCATGTGTACATTTTTGGGGAAAGATGATGCCAACGGTTTTTGCTTTAGTTGTAGTTAAAGATATTATGCTTTAATTTGGTTATATATGGTTTCTCAATGTGTATCTATTGTAAAGACAAGACTATGATCAAAGGGTAAATGTGCCGTCACGCAGGGTTGAGCTTATTTGGTCTCACGAACCATTTGAAATTTTAGCTGTAACAAATATTGTATACTCTCAGTGATTGATTTGTTAATAATCTCATGTCTATGCTGTTGCTGATTTGTTGTGTTGTTTGTGTAGGGGTGTACCAGGATGTAGTAATCCCTGTGACAAATTTTCATTTTGAAAATAAGGGACTTATGTCATTAGCTGGGGATGTGTTTGATGTACCAATCAGGAAAGATATTGTTCATAGAGTTGTGAGATGGCAGCTTGCCAAACGTCAACAGGTGATTAATGATTTATATACTTGGAGACTGACCCCCCTCCCCGGGCTCGAATGAGAATGAATAAAATCATAAGATTTAAGGATCAGTTTTCTTGAAATTCACTTGTGTTGTTTTTACTTTTTAGTACCTGATGTCCTTGGTCCTAGATTTTTGTAATGGTTACATATTATGGAAGTAAATACGAGTGCAGCTCAGCATAGACCCCTTTTCTTGTGATCTTCTTCCACAATACGTATCACGACGTAGTACCTGATGTCCTTGGTCCTAGATTTTTGTAATGGTTACATATTATGGAAGTAAATACGAGTGCAGCTCAGCATAGACCCCTTTTCTTGTGATCTTCTTCCACAATACGTATCTTAATAAAGCATGTCGTGTATGGATTTCAGGGAACTCATTCCACTAAAACAATCAGTGAGGTAAGTGGAACTGGGAGAAAGCCGCATCCCCAGAAGGGTACTGGTCGAGCAAGGCAGGGATCACGACGTAGTCCTCATGTAAGGAATATTCTTCTTATTGATCCATTTTTCGGAATTTTTTTCTTTTACTTTACCATGTTGGGTTTGCTTATTAGTAATCGGCGGCTCAGTACTATAGAATAATTTGCCAAATTTTATGGAAAACGATAGATGAGAGGAGGTTCTACCATGCATGGTCCTAAACCACGGAGTCATGCTTTTAAACTAAACAAAAAGGTTCGGCGTTTGGGCTTGAAGATTGCATTATCAGCACGCGCTGCAGAAGGGAAGGTAAGACTCCTTTGCTTCTCTCACAAGATGCATCCAACACATATAGGTGCTCATGAATTTAAGACCATGCAGTATTTTACTGCTTCTGAAGATGTAACAAAGATCTTCTCTGTTCTTCCACCAATCCATCCATATTTTGAATGTGAACCATTTTGTGTCTAACCTTGGATGAATGGATTTGTTGCCTTTTTCTGTTATGACCTAGTTTTTGAGGCAAATTATATGGTGATATCTTATACGGCTCTGTAGTTAATACCTTACAGTTTTTCTTTTTCTTTTTCGGGGGATGGGGGTGACTGAGTGTTCCACTGCTTCAGAAGTGCTTTTAGTCCCGCTGAAGGTTCGCACTTATCTGGTCAAATAAAGTTGTGTAAATTTACTTGCATGTACAATATAGTTTGTAATGGCTTGGACTACTTGATCAGAATCGCCCTTTTTATATATGTAACTACGTTTTCGCTGTGTTTGGGTTGGTCATAATAGTTTGCATCTAAAGTCTGTTTAGATTTAGGGTCAAATGTTAAGGGTGCTTATAAAAAAAATATACTGACATTTGGTTTTGTTTTTTTGCACTCACCGAGCGTAGTTTAATGTTTAGGGGTATATGGTGCACAAATTTAGATAGGAAAGAGGGTGTATTTTTAGTTCTGCAGAAATACAAGGGTATCCAATGAAAATGCCCTGATACTTTTGGTGTATTTGCTACATTGGCTGATTTGTGAATTCTTACAGAAAGAGTTATCTCCCTTCCCTCACTGCTTTACTCAGTTTTAGAGTTATATTTTCTTTAACTTGTCATACCGATCTGCCCACTTGTGAGTTCTTATTTACCAAAATTTGCGTTAATAGTTTAGTTATGTACAGCTTGTGATTTTTGATGACCTGGAGGTCCCTACTCACAAGACCAAAAACATTGTTCATTGGGTCAACGGGCTGGACGATTCAAAGAAATTGCTGTTGGTTGATGATGGTGTTATTAATGAAAAGTTGAAGTTGGCTACACAGAATATACATTACGTTAATGTGTTGCCTTCAATTGTAAGTTGCAGCATTTTATGATCTAATCCTTTTTATGTAAGTGTGTGAACATAACAACTACAGGAAAGTCACAATGTTCCCACCAAACCATACCAAGTCTCATACTCTCCTTGTAGCCTTGCAGAATGTTTCTCTTCTTTCACCGGGGATTGTAAAACCTTTTTTGTTTAAGGGGGCGGGGACTTATTTTAGTTGGTTCCTTATTCGGGTTTCTTGCACATTTTGGTATATTCAAAGTCCCTGCTAATGCTCCATTTGTTTTCCAGGGTTTGAATGTCTACAGTATCTTGCAGCATGACACTTTGGTAATGTCTCGTGCTGCTGTGAACCGGATAGTTGAGCGGATGAACACCCCAATCAAACGGTGAGGATATGAGAATTCGTAGTCATATTTTTTCAGGAGATTTCAAACGACGTACAATTTGGCAGCTAAAAATGGGATGTAGTTTAAAGTTGTTCAAGTTCAACCCATTTCACTTAGCTTAGGATGAAATATACTTGTACTTTCTCTGTATGTGTCAACCAACCTGATTGAACTGTGTGCATGTATTACTTGGCACATTACATGGCTTTTCATGAAGCTGTAAATCGTCTTAGCTCACATGAGCCTTTCCCTGGCTTGTTAATGTGAGCTTGATACTTCAATAAGGAACAAAACCTCTAGATTGTGATTTATAGCTGTTTTTAAGAATTATGATGTGAATCAGTTTCGCTGACTTTCCTGTTTAAAATTGGGAAAATTTGTCAGAAAGGACCTTTTAAAACACAAAAATTGTGAGAAAGGACCTTTTAAAAAAAAAGTTGTGAAAGAAGGCCTAATTGGGTTTTTTTTTGTTGTGAATAAGGACCATAAGCCATATTCCGGTGGTCAACGACTATTTTTCGGCGTTGACCATCACGTGACATGCACGTGTCTTAAATTTTTACAATTTTTTTTGAAAAGTTTCCCTCCATGTTTCCCCC

mRNA sequence

CAACAAACCATCTCAGATCCGGATGAAAGTAAAAGGTTGGGACTGGGAGTAGCAAACATTGACCCAAAGGGCAACCATCTCGGCCTTGACTGAAAGCCCAAACATTGGAACTTGAAATAATAACAAAAAAAAAAGAGACACTCTGCACTTCAAAACTCTTAAACCCATAAACCCAGACAAGCGAAGCAGGTCTGAGAGTGTTTTCCATGGCGAAAAGGATCTTGGCTTCCCTCCACCACCATTTGCTCCGCCCTCATGCTCATCTTCCTTCCCTCGGTGTTTCATGTAGTAGACTAATTTCAACAACCACTGTGACTTCAAATTCAAGTAATGATGAAATCCCATCTGATTTACTTATGCCCAAGAAAACTGCTTTCATTCCAGATCGTAATCAAGGGGTGTACCAGGATGTAGTAATCCCTGTGACAAATTTTCATTTTGAAAATAAGGGACTTATGTCATTAGCTGGGGATGTGTTTGATGTACCAATCAGGAAAGATATTGTTCATAGAGTTGTGAGATGGCAGCTTGCCAAACGTCAACAGGGAACTCATTCCACTAAAACAATCAGTGAGGTAAGTGGAACTGGGAGAAAGCCGCATCCCCAGAAGGGTACTGGTCGAGCAAGGCAGGGATCACGACGTAGTCCTCATATGAGAGGAGGTTCTACCATGCATGGTCCTAAACCACGGAGTCATGCTTTTAAACTAAACAAAAAGGTTCGGCGTTTGGGCTTGAAGATTGCATTATCAGCACGCGCTGCAGAAGGGAAGCTTGTGATTTTTGATGACCTGGAGGTCCCTACTCACAAGACCAAAAACATTGTTCATTGGGTCAACGGGCTGGACGATTCAAAGAAATTGCTGTTGGTTGATGATGGTGTTATTAATGAAAAGTTGAAGTTGGCTACACAGAATATACATTACGTTAATGTGTTGCCTTCAATTGGTTTGAATGTCTACAGTATCTTGCAGCATGACACTTTGGTAATGTCTCGTGCTGCTGTGAACCGGATAGTTGAGCGGATGAACACCCCAATCAAACGGTGAGGATATGAGAATTCGTAGTCATATTTTTTCAGGAGATTTCAAACGACGTACAATTTGGCAGCTAAAAATGGGATGTAGTTTAAAGTTGTTCAAGTTCAACCCATTTCACTTAGCTTAGGATGAAATATACTTGTACTTTCTCTGTATGTGTCAACCAACCTGATTGAACTGTGTGCATGTATTACTTGGCACATTACATGGCTTTTCATGAAGCTGTAAATCGTCTTAGCTCACATGAGCCTTTCCCTGGCTTGTTAATGTGAGCTTGATACTTCAATAAGGAACAAAACCTCTAGATTGTGATTTATAGCTGTTTTTAAGAATTATGATGTGAATCAGTTTCGCTGACTTTCCTGTTTAAAATTGGGAAAATTTGTCAGAAAGGACCTTTTAAAACACAAAAATTGTGAGAAAGGACCTTTTAAAAAAAAAGTTGTGAAAGAAGGCCTAATTGGGTTTTTTTTTGTTGTGAATAAGGACCATAAGCCATATTCCGGTGGTCAACGACTATTTTTCGGCGTTGACCATCACGTGACATGCACGTGTCTTAAATTTTTACAATTTTTTTTGAAAAGTTTCCCTCCATGTTTCCCCC

Coding sequence (CDS)

ATGGCGAAAAGGATCTTGGCTTCCCTCCACCACCATTTGCTCCGCCCTCATGCTCATCTTCCTTCCCTCGGTGTTTCATGTAGTAGACTAATTTCAACAACCACTGTGACTTCAAATTCAAGTAATGATGAAATCCCATCTGATTTACTTATGCCCAAGAAAACTGCTTTCATTCCAGATCGTAATCAAGGGGTGTACCAGGATGTAGTAATCCCTGTGACAAATTTTCATTTTGAAAATAAGGGACTTATGTCATTAGCTGGGGATGTGTTTGATGTACCAATCAGGAAAGATATTGTTCATAGAGTTGTGAGATGGCAGCTTGCCAAACGTCAACAGGGAACTCATTCCACTAAAACAATCAGTGAGGTAAGTGGAACTGGGAGAAAGCCGCATCCCCAGAAGGGTACTGGTCGAGCAAGGCAGGGATCACGACGTAGTCCTCATATGAGAGGAGGTTCTACCATGCATGGTCCTAAACCACGGAGTCATGCTTTTAAACTAAACAAAAAGGTTCGGCGTTTGGGCTTGAAGATTGCATTATCAGCACGCGCTGCAGAAGGGAAGCTTGTGATTTTTGATGACCTGGAGGTCCCTACTCACAAGACCAAAAACATTGTTCATTGGGTCAACGGGCTGGACGATTCAAAGAAATTGCTGTTGGTTGATGATGGTGTTATTAATGAAAAGTTGAAGTTGGCTACACAGAATATACATTACGTTAATGTGTTGCCTTCAATTGGTTTGAATGTCTACAGTATCTTGCAGCATGACACTTTGGTAATGTCTCGTGCTGCTGTGAACCGGATAGTTGAGCGGATGAACACCCCAATCAAACGGTGA

Protein sequence

MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07206.1	Spo07206.1	mRNA

Homology

[Close]

BLAST of Spo07206.1 vs. NCBI nr
Match: gi|902183024|gb|KNA10030.1| (hypothetical protein SOVF_147820 [Spinacia oleracea])

HSP 1 Score: 551.2 bits (1419), Expect = 1.000e-153
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60
           MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD
Sbjct: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60

Query: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120
           RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT
Sbjct: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120

Query: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180
           ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA
Sbjct: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180

Query: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240
           LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY
Sbjct: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240

Query: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR
Sbjct: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 280

[Close]

BLAST of Spo07206.1 vs. NCBI nr
Match: gi|902228600|gb|KNA21178.1| (hypothetical protein SOVF_045660 [Spinacia oleracea])

HSP 1 Score: 492.7 bits (1267), Expect = 4.400e-136
Identity = 254/281 (90.39%), Postives = 264/281 (93.95%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPH-AHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIP 60
           MAKRILA+LHHHL+RPH AHLPS  VS SRL+STTTVT  SSN EIPS+LLMPKK+  I 
Sbjct: 1   MAKRILAALHHHLIRPHHAHLPSPAVSYSRLLSTTTVTPYSSNGEIPSNLLMPKKSVSIA 60

Query: 61  DRNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK 120
           D  QGVYQD+VIPVTNFHFE+KGLM+LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK
Sbjct: 61  DHTQGVYQDLVIPVTNFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK 120

Query: 121 TISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKI 180
           TISEVSGTGRKPHPQKGTGRARQGS+RS HMRGGSTMHGPKPRSHAFKLNK VRRLGLKI
Sbjct: 121 TISEVSGTGRKPHPQKGTGRARQGSKRSCHMRGGSTMHGPKPRSHAFKLNKMVRRLGLKI 180

Query: 181 ALSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIH 240
           ALSARA EGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDG INEKLKLATQNIH
Sbjct: 181 ALSARATEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGPINEKLKLATQNIH 240

Query: 241 YVNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           YVNVLPSIGLNVYSILQHDTLVMSR AVNRIVERM+TPIKR
Sbjct: 241 YVNVLPSIGLNVYSILQHDTLVMSRGAVNRIVERMHTPIKR 281

[Close]

BLAST of Spo07206.1 vs. NCBI nr
Match: gi|731347541|ref|XP_010685040.1| (PREDICTED: 39S ribosomal protein L4, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 459.5 bits (1181), Expect = 4.100e-126
Identity = 235/280 (83.93%), Postives = 256/280 (91.43%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60
           MAK+IL +LH HLLR H   P LGVSCSRL STTTVT NSS+ EIPSDLLMPKK+  I D
Sbjct: 1   MAKKILGALHLHLLRSHHAHPFLGVSCSRLFSTTTVTPNSSDGEIPSDLLMPKKSVSISD 60

Query: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120
           R+QGVYQD+VIPVTNFHFE+KGLM+LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT
Sbjct: 61  RSQGVYQDLVIPVTNFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120

Query: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180
           ISEVSGTG+KP+PQKGTGRAR GSRRS   RGG+TMHGPKPRSHA KLNKKVRRLGLKIA
Sbjct: 121 ISEVSGTGKKPYPQKGTGRARLGSRRSNQQRGGATMHGPKPRSHAHKLNKKVRRLGLKIA 180

Query: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240
           LSARAAEGKL++FDDL VPTHKTKNIV+WV+ ++DSKKLLLVDDG I+EKLKLATQN+HY
Sbjct: 181 LSARAAEGKLLVFDDLTVPTHKTKNIVNWVDEMEDSKKLLLVDDGPISEKLKLATQNLHY 240

Query: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           VNVLPS+GLNVYSIL HDTLVMSR AVNRIVERM+TPI R
Sbjct: 241 VNVLPSVGLNVYSILLHDTLVMSRGAVNRIVERMHTPISR 280

[Close]

BLAST of Spo07206.1 vs. NCBI nr
Match: gi|823223708|ref|XP_012444603.1| (PREDICTED: 39S ribosomal protein L4, mitochondrial isoform X2 [Gossypium raimondii])

HSP 1 Score: 383.6 bits (984), Expect = 2.900e-103
Identity = 198/252 (78.57%), Postives = 219/252 (86.90%), Query Frame = 1


		  
Query: 29  RLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLAG 88
           R  STT  T +S+    PSDLL   KT   P+R  G+Y+D+V+PVTNFH E+ GLM LAG
Sbjct: 58  RRFSTTIWTPDSNGGAFPSDLLS-SKTVLTPERTIGLYEDLVVPVTNFHNEDHGLMVLAG 117

Query: 89  DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRSP 148
           DVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKP  QKG GRAR GS R P
Sbjct: 118 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGLGRARHGSLRGP 177

Query: 149 HMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIVH 208
             RGG+TMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKL++F+DLEVPTHKTKNIV+
Sbjct: 178 QFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVN 237

Query: 209 WVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAVN 268
           +VN ++++KKLLLVD G INEKLKLATQN+HYVNVLPSIGLNVYSILQHDTLVMSR AVN
Sbjct: 238 YVNQMENTKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRDAVN 297

Query: 269 RIVERMNTPIKR 281
           RIVERM+TPI R
Sbjct: 298 RIVERMHTPINR 308

[Close]

BLAST of Spo07206.1 vs. NCBI nr
Match: gi|823223702|ref|XP_012444599.1| (PREDICTED: 39S ribosomal protein L4, mitochondrial isoform X1 [Gossypium raimondii])

HSP 1 Score: 383.6 bits (984), Expect = 2.900e-103
Identity = 198/252 (78.57%), Postives = 219/252 (86.90%), Query Frame = 1


		  
Query: 29  RLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLAG 88
           R  STT  T +S+    PSDLL   KT   P+R  G+Y+D+V+PVTNFH E+ GLM LAG
Sbjct: 65  RRFSTTIWTPDSNGGAFPSDLLS-SKTVLTPERTIGLYEDLVVPVTNFHNEDHGLMVLAG 124

Query: 89  DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRSP 148
           DVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKP  QKG GRAR GS R P
Sbjct: 125 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGLGRARHGSLRGP 184

Query: 149 HMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIVH 208
             RGG+TMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKL++F+DLEVPTHKTKNIV+
Sbjct: 185 QFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVN 244

Query: 209 WVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAVN 268
           +VN ++++KKLLLVD G INEKLKLATQN+HYVNVLPSIGLNVYSILQHDTLVMSR AVN
Sbjct: 245 YVNQMENTKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRDAVN 304

Query: 269 RIVERMNTPIKR 281
           RIVERM+TPI R
Sbjct: 305 RIVERMHTPINR 315

[Close]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS12_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_147820 PE=3 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 7.200e-154
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60
           MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD
Sbjct: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60

Query: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120
           RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT
Sbjct: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120

Query: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180
           ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA
Sbjct: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180

Query: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240
           LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY
Sbjct: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240

Query: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR
Sbjct: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 280

[Close]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045660 PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 3.000e-136
Identity = 254/281 (90.39%), Postives = 264/281 (93.95%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPH-AHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIP 60
           MAKRILA+LHHHL+RPH AHLPS  VS SRL+STTTVT  SSN EIPS+LLMPKK+  I 
Sbjct: 1   MAKRILAALHHHLIRPHHAHLPSPAVSYSRLLSTTTVTPYSSNGEIPSNLLMPKKSVSIA 60

Query: 61  DRNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK 120
           D  QGVYQD+VIPVTNFHFE+KGLM+LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK
Sbjct: 61  DHTQGVYQDLVIPVTNFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTK 120

Query: 121 TISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKI 180
           TISEVSGTGRKPHPQKGTGRARQGS+RS HMRGGSTMHGPKPRSHAFKLNK VRRLGLKI
Sbjct: 121 TISEVSGTGRKPHPQKGTGRARQGSKRSCHMRGGSTMHGPKPRSHAFKLNKMVRRLGLKI 180

Query: 181 ALSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIH 240
           ALSARA EGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDG INEKLKLATQNIH
Sbjct: 181 ALSARATEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGPINEKLKLATQNIH 240

Query: 241 YVNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           YVNVLPSIGLNVYSILQHDTLVMSR AVNRIVERM+TPIKR
Sbjct: 241 YVNVLPSIGLNVYSILQHDTLVMSRGAVNRIVERMHTPIKR 281

[Close]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C019_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167840 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 2.900e-126
Identity = 235/280 (83.93%), Postives = 256/280 (91.43%), Query Frame = 1


		  
Query: 1   MAKRILASLHHHLLRPHAHLPSLGVSCSRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPD 60
           MAK+IL +LH HLLR H   P LGVSCSRL STTTVT NSS+ EIPSDLLMPKK+  I D
Sbjct: 1   MAKKILGALHLHLLRSHHAHPFLGVSCSRLFSTTTVTPNSSDGEIPSDLLMPKKSVSISD 60

Query: 61  RNQGVYQDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120
           R+QGVYQD+VIPVTNFHFE+KGLM+LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT
Sbjct: 61  RSQGVYQDLVIPVTNFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKT 120

Query: 121 ISEVSGTGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIA 180
           ISEVSGTG+KP+PQKGTGRAR GSRRS   RGG+TMHGPKPRSHA KLNKKVRRLGLKIA
Sbjct: 121 ISEVSGTGKKPYPQKGTGRARLGSRRSNQQRGGATMHGPKPRSHAHKLNKKVRRLGLKIA 180

Query: 181 LSARAAEGKLVIFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHY 240
           LSARAAEGKL++FDDL VPTHKTKNIV+WV+ ++DSKKLLLVDDG I+EKLKLATQN+HY
Sbjct: 181 LSARAAEGKLLVFDDLTVPTHKTKNIVNWVDEMEDSKKLLLVDDGPISEKLKLATQNLHY 240

Query: 241 VNVLPSIGLNVYSILQHDTLVMSRAAVNRIVERMNTPIKR 281
           VNVLPS+GLNVYSIL HDTLVMSR AVNRIVERM+TPI R
Sbjct: 241 VNVLPSVGLNVYSILLHDTLVMSRGAVNRIVERMHTPISR 280

[Close]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TLV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G181400 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.000e-103
Identity = 198/252 (78.57%), Postives = 219/252 (86.90%), Query Frame = 1


		  
Query: 29  RLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLAG 88
           R  STT  T +S+    PSDLL   KT   P+R  G+Y+D+V+PVTNFH E+ GLM LAG
Sbjct: 71  RRFSTTIWTPDSNGGAFPSDLLS-SKTVLTPERTIGLYEDLVVPVTNFHNEDHGLMVLAG 130

Query: 89  DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRSP 148
           DVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKP  QKG GRAR GS R P
Sbjct: 131 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGLGRARHGSLRGP 190

Query: 149 HMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIVH 208
             RGG+TMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKL++F+DLEVPTHKTKNIV+
Sbjct: 191 QFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVN 250

Query: 209 WVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAVN 268
           +VN ++++KKLLLVD G INEKLKLATQN+HYVNVLPSIGLNVYSILQHDTLVMSR AVN
Sbjct: 251 YVNQMENTKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRDAVN 310

Query: 269 RIVERMNTPIKR 281
           RIVERM+TPI R
Sbjct: 311 RIVERMHTPINR 321

[Close]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QIA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G181400 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.000e-103
Identity = 198/252 (78.57%), Postives = 219/252 (86.90%), Query Frame = 1


		  
Query: 29  RLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLAG 88
           R  STT  T +S+    PSDLL   KT   P+R  G+Y+D+V+PVTNFH E+ GLM LAG
Sbjct: 58  RRFSTTIWTPDSNGGAFPSDLLS-SKTVLTPERTIGLYEDLVVPVTNFHNEDHGLMVLAG 117

Query: 89  DVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRSP 148
           DVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGRKP  QKG GRAR GS R P
Sbjct: 118 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGLGRARHGSLRGP 177

Query: 149 HMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIVH 208
             RGG+TMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKL++F+DLEVPTHKTKNIV+
Sbjct: 178 QFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIVN 237

Query: 209 WVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAVN 268
           +VN ++++KKLLLVD G INEKLKLATQN+HYVNVLPSIGLNVYSILQHDTLVMSR AVN
Sbjct: 238 YVNQMENTKKLLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMSRDAVN 297

Query: 269 RIVERMNTPIKR 281
           RIVERM+TPI R
Sbjct: 298 RIVERMHTPINR 308

[Close]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Match: RL4_RHORT (50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rplD PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.500e-48
Identity = 102/196 (52.04%), Postives = 139/196 (70.92%), Query Frame = 1


		  
Query: 79  ENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTG 138
           ++ G + L+  VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT  KP  QKGTG
Sbjct: 11  KDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPFKQKGTG 70

Query: 139 RARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEV 198
            ARQGS+RSP  RGG+T+ GP  RSHA  LNKKVR+LGLK ALSA+A  G+L++ D    
Sbjct: 71  HARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIVLDQAIS 130

Query: 199 PTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHD 258
            + KTK+++  +  L   +K+L +D   +NEK  LA +NI  ++VLP  G NVY IL+ D
Sbjct: 131 ESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGANVYDILRRD 190

Query: 259 TLVMSRAAVNRIVERM 275
           TLV+++ AV  + ER+
Sbjct: 191 TLVLTKEAVKHLEERL 205

[Close]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Match: RL4_MAGSA (50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.900e-45
Identity = 100/193 (51.81%), Postives = 131/193 (67.88%), Query Frame = 1


		  
Query: 82  GLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRAR 141
           G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT +KP  QKG GRAR
Sbjct: 14  GEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPFAQKGGGRAR 73

Query: 142 QGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTH 201
           QGS RS   RGGST+ GP  RSHA  L KKVR+L LK ALSA+ A+GKL++ D     + 
Sbjct: 74  QGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIVVDAASAGSP 133

Query: 202 KTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLV 261
           KTK++   +  L  S  +L +D   ++    LA++NI YV+VLP+ G NVY IL+ DTLV
Sbjct: 134 KTKDLAARLGKLGLS-SVLFIDGAAVDGNFALASRNIPYVDVLPTQGANVYDILRRDTLV 193

Query: 262 MSRAAVNRIVERM 275
           +++ AV  +  R+
Sbjct: 194 LTKDAVAALEARL 205

[Close]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Match: RL4_RHOCS (50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.400e-44
Identity = 100/202 (49.50%), Postives = 134/202 (66.34%), Query Frame = 1


		  
Query: 73  VTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPH 132
           V N + E  G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT +KP 
Sbjct: 5   VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64

Query: 133 PQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVI 192
            QKGTGRARQGS RSP  RGG+ + GP  RSH   L KKVR+L LK ALS +AAEGKL +
Sbjct: 65  RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFV 124

Query: 193 FDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVY 252
            +  +  THKTK +   +  L      L++D   ++E    A +NI +++VLP  G NVY
Sbjct: 125 LEAAKADTHKTKALAAQLKTL-GLTSALIIDGANLDETFVRAARNIPHLDVLPEQGANVY 184

Query: 253 SILQHDTLVMSRAAVNRIVERM 275
            IL+ D LV++R AV ++  R+
Sbjct: 185 DILRRDVLVLTRNAVEQLEARL 205

[Close]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Match: RL4_RICBR (50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) GN=rplD PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.000e-44
Identity = 101/203 (49.75%), Postives = 134/203 (66.01%), Query Frame = 1


		  
Query: 73  VTNFHFENKGLMSLAGDVFDVP-IRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKP 132
           + N   E  G +SL  D+F V  IR DI+ +VV WQ AK   GTH TKT+SEVSGT +KP
Sbjct: 5   ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64

Query: 133 HPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLV 192
             QKGTG ARQGS RS  MRGG  +HGP  RSHA KL KKVR+LGL  ALS + +EGKL+
Sbjct: 65  FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124

Query: 193 IFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNV 252
           + D L++ T KT N+V+ +N     K   ++D   ++    LA QNI+   V+P IG NV
Sbjct: 125 VIDSLKLETPKTSNLVNILNKF-QGKSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANV 184

Query: 253 YSILQHDTLVMSRAAVNRIVERM 275
           Y I++H+ +++S+ AVN + ER+
Sbjct: 185 YDIIRHEYVLLSQEAVNVLEERL 206

[Close]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Match: RL4_RICB8 (50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) GN=rplD PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.000e-44
Identity = 101/203 (49.75%), Postives = 134/203 (66.01%), Query Frame = 1


		  
Query: 73  VTNFHFENKGLMSLAGDVFDVP-IRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKP 132
           + N   E  G +SL  D+F V  IR DI+ +VV WQ AK   GTH TKT+SEVSGT +KP
Sbjct: 5   ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64

Query: 133 HPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLV 192
             QKGTG ARQGS RS  MRGG  +HGP  RSHA KL KKVR+LGL  ALS + +EGKL+
Sbjct: 65  FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124

Query: 193 IFDDLEVPTHKTKNIVHWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNV 252
           + D L++ T KT N+V+ +N     K   ++D   ++    LA QNI+   V+P IG NV
Sbjct: 125 VIDSLKLETPKTSNLVNILNKF-QGKSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANV 184

Query: 253 YSILQHDTLVMSRAAVNRIVERM 275
           Y I++H+ +++S+ AVN + ER+
Sbjct: 185 YDIIRHEYVLLSQEAVNVLEERL 206

[Close]

BLAST of Spo07206.1 vs. TAIR (Arabidopsis)
Match: AT2G20060.1 (Ribosomal protein L4/L1 family)

HSP 1 Score: 355.5 bits (911), Expect = 2.900e-98
Identity = 182/253 (71.94%), Postives = 213/253 (84.19%), Query Frame = 1


		  
Query: 28  SRLISTTTVTSNSSNDEIPSDLLMPKKTAFIPDRNQGVYQDVVIPVTNFHFENKGLMSLA 87
           +R +ST+ +T +   D  PSDLL  KKT   PDR  G YQD+VIPVTNF  E KG M LA
Sbjct: 52  NRKLSTSILTPD---DSFPSDLLT-KKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVLA 111

Query: 88  GDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSRRS 147
           GDVFDVPIRKDI+H VVRWQLAKRQQGTHSTKT+SEVSGTGRKP  QKGTGRAR G+ R 
Sbjct: 112 GDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLRG 171

Query: 148 PHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLVIFDDLEVPTHKTKNIV 207
           P  RGG  MHGPKPRSHA K+NK+VRRLGLKIAL+ARAAEGKL++FDDL +PTHKTKNIV
Sbjct: 172 PQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIV 231

Query: 208 HWVNGLDDSKKLLLVDDGVINEKLKLATQNIHYVNVLPSIGLNVYSILQHDTLVMSRAAV 267
           ++ N ++++KK+L+V+ G I+EKLKLATQN+HYVN++PSIGLNVYSIL HDTL+MSR AV
Sbjct: 232 NYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAV 291

Query: 268 NRIVERMNTPIKR 281
           N+IVERM+TPI R
Sbjct: 292 NKIVERMHTPINR 300

[Close]

BLAST of Spo07206.1 vs. TAIR (Arabidopsis)
Match: AT1G07320.1 (ribosomal protein L4)

HSP 1 Score: 100.9 bits (250), Expect = 1.300e-21
Identity = 70/208 (33.65%), Postives = 116/208 (55.77%), Query Frame = 1


		  
Query: 67  QDVVIPVTNFHFENKGLMSLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSG 126
           Q   +P+ +F  E  G   L          + +VHR +   L  +++GT ST T  EV G
Sbjct: 50  QLATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRG 109

Query: 127 TGRKPHPQKGTGRARQGSRRSPHMRGGSTMHGPKPRSHAFKLNKKVRRLGLKIAL-SARA 186
            G KP+ QK TG AR+GS+R+P   GG  + GP+P+  + K+N+K ++L +  AL SA +
Sbjct: 110 GGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAAS 169

Query: 187 AEGKLVIFDDL--EVPTHKTKNIVHWVN--GLDDSKK--LLLVDDGVINEKLKLATQNIH 246
           AEG  ++ ++   +    KTK+ +  +   GLD  +K   L++D   ++E +  +++NI 
Sbjct: 170 AEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMID---VDENVAKSSRNIG 229

Query: 247 YVNVLPSIGLNVYSILQHDTLVMSRAAV 268
            + +L    LN++ IL  D LV++ AAV
Sbjct: 230 TLRMLTPRTLNLFDILNADKLVLTPAAV 254

The following BLAST results are available for this feature:

BLAST of Spo07206.1 vs. NCBI nr
BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
BLAST of Spo07206.1 vs. TAIR (Arabidopsis)

BLAST of Spo07206.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902183024\|gb\|KNA10030.1\|	1.0e-153	100.	hypothetical protein SOVF_1478...	[more]
gi\|902228600\|gb\|KNA21178.1\|	4.4e-136	90.3	hypothetical protein SOVF_0456...	[more]
gi\|731347541\|ref\|XP_010685040.1\|	4.1e-126	83.9	PREDICTED: 39S ribosomal prote...	[more]
gi\|823223708\|ref\|XP_012444603.1\|	2.9e-103	78.5	PREDICTED: 39S ribosomal prote...	[more]
gi\|823223702\|ref\|XP_012444599.1\|	2.9e-103	78.5	PREDICTED: 39S ribosomal prote...	[more]

BLAST of Spo07206.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QS12_SPIOL	7.2e-154	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RNY2_SPIOL	3.0e-136	90.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8C019_BETVU	2.9e-126	83.9	Uncharacterized protein OS=Bet...	[more]
A0A0D2TLV6_GOSRA	2.0e-103	78.5	Uncharacterized protein OS=Gos...	[more]
A0A0D2QIA1_GOSRA	2.0e-103	78.5	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo07206.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL4_RHORT	4.5e-48	52.0	50S ribosomal protein L4 OS=Rh...	[more]
RL4_MAGSA	7.9e-45	51.8	50S ribosomal protein L4 OS=Ma...	[more]
RL4_RHOCS	1.4e-44	49.5	50S ribosomal protein L4 OS=Rh...	[more]
RL4_RICBR	3.0e-44	49.7	50S ribosomal protein L4 OS=Ri...	[more]
RL4_RICB8	3.0e-44	49.7	50S ribosomal protein L4 OS=Ri...	[more]

BLAST of Spo07206.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G20060.1	2.9e-98	71.9	Ribosomal protein L4/L1 family	[more]
AT1G07320.1	1.3e-21	33.6	ribosomal protein L4	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 86..272 score: 5.5
IPR013005	50S ribosomal protein uL4	HAMAP	MF_01328_B	Ribosomal_L4_B	coord: 79..275 score: 31
IPR013005	50S ribosomal protein uL4	PANTHER	PTHR10746	50S RIBOSOMAL PROTEIN L4	coord: 8..278 score: 3.7E
IPR013005	50S ribosomal protein uL4	TIGRFAMs	TIGR03953	TIGR03953	coord: 85..271 score: 1.4
IPR023574	Ribosomal protein L4 domain	GENE3D	3.40.1370.10		coord: 125..274 score: 5.8
IPR023574	Ribosomal protein L4 domain	unknown	SSF52166	Ribosomal protein L4	coord: 71..274 score: 2.62
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..27 score:

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo07928	0.71	Barchart \| Table
Spo22326	0.70	Barchart \| Table
Spo28098	0.70	Barchart \| Table
Spo17500	0.70	Barchart \| Table
Spo05547	0.70	Barchart \| Table
Spo19268	0.69	Barchart \| Table
Spo10624	0.69	Barchart \| Table
Spo26857	0.69	Barchart \| Table
Spo18304	0.68	Barchart \| Table
Spo17929	0.68	Barchart \| Table
Spo03105	0.68	Barchart \| Table
Spo07599	0.68	Barchart \| Table
Spo07955	0.68	Barchart \| Table
Spo10705	0.68	Barchart \| Table
Spo16627	0.68	Barchart \| Table
Spo17110	0.68	Barchart \| Table
Spo02706	0.68	Barchart \| Table
Spo26636	0.68	Barchart \| Table
Spo07223	0.67	Barchart \| Table
Spo19267	0.66	Barchart \| Table
Spo03882	0.66	Barchart \| Table
Spo27105	0.66	Barchart \| Table
Spo27210	0.66	Barchart \| Table
Spo09353	0.66	Barchart \| Table
Spo23690	0.66	Barchart \| Table
Spo25451	0.66	Barchart \| Table
Spo25886	0.66	Barchart \| Table
Spo21719	0.65	Barchart \| Table
Spo12054	0.65	Barchart \| Table
Spo20161	0.65	Barchart \| Table