Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTGCATCAGTTGTTATGCACCAAATAACTACGTACACACAAGGTTCCCTAGCTTTGAACGTATTCAGATATCTCAAGGTAACGTGCTAGGCTCTTAATTTTTTTGAAATAATTATATAATTTTGGTACTACATAGTTTGCTGTACAACATAATATTGTTATTATTGTTAATTAGTTGGTGTTGGTTATACGTTGTAGTTTAAGGAATAAGGAAAAATGGCTTCAGCACAGGCAATCGCAATGAATGACAAGGAGAAAGAAATGGTGGTTGCGATGGTAGAACAAGCAAAGAGCGTCGGCAAAACCAATAACATGAAATTGGGTGCTGTGAACCAGCAAGCTAATCAAAACAGTGCGGTTGTCTATATTAACAATAGCACCCCTGCAAAAATCAATTTTAACCAAAATTTGAATTGGGCAGGGAGTGTCATTGGTACCCCATATCCTACTACGATTACCGCCATGTCGTCGGCTTCCTTCACCCATGCTGCGCAGCCTATCGACGGCTCCAAAGGAGCCGTGGTGTACTTCGGCAGCAACAAGGACGGAATTCCTTCCGGATGGCTTTTGGCTTGGTTTGCACCCGCCAAAATGACCCCGACCAATCCTAATAGGGTAACCAGTACGGCCATTACTTTTTTTTATCTAGCTATTCACAAATAATTAATCAATTTACTAATGCAAATTTGAGGTGTTAGTTTAATGTGACTCCTAAAAAGAATACAGATGGAATATAGTTCGTGGTAATTTTACGAAATTGTTAAAGGCTTGCCAACCTTATTTTTAAATTTTCCTATTTATTTTTGTTTTACATAGTTACAAAAATTATACTGTTAAAATTTTTGTTGCACAGGTACATGTTGAGTGTGGTCCCAGCGCTAAGTATGGTTCCGTAGATTGGGACGTAATCAAAGCTAGGCTTGATGTAGCAGACTCCTACAACAACCACTTTGACCCAGTTACTCATACCACCATTGCTGCCGAGATCACTCCAGGCGGCAGTTTCGCAGCGATTGGTGCGAATTTTGGAGTTTTTTAAATGAATTACTACTCCTAATAAGTATTACGGACGTAATTATGGGTTATTCCTAATGACTAATATGCATGGTAGCTCGATCTTATCCTTCCAATCAAGCTAAGCATATTAATTATTATATACGAATAATACTATTTCAATAATCATGGCCCTTGTATCTTTAATTTGTATTCCTAATGCTTATAAGTTATCATATTATATTTCTATTTCTATATTTGTTAATTGTTAATTGTTATGCGGAGTAAGGTATACTTCCACTACAAGAAAACGGAATTTTTTCGACCGCCATTTTCAGTCAATAAAAGGCTGAAAATAGTCGGTAAATGATTTTTTGTACGAAAATGGTCGGTAAAGGTAGTCGTTATTACCCTGGTAGAAGATTGAGTAAATTCCGACTGAAAAACAGTCGGTAAATTTTACCGCCTACTTTTTACAGTCTAAATTTAAAAATTGAACATGAATGACAACAAAATTACTATCAAAAATCTGATTACAAATTAAAGTAAAGGCGTGAGTTTGTGTTGAGTAGTGAGGTTTTGATGATTATAAACAAATGATGATTATCTAATTAACATGTGTGCTAAGATGTGCATAGGAAGAACAAGCTATGATTAAACCAAGAGACAAGGGACATGAGCAATGATAAGCTATTGTTGACGAGAGCGGAGATGGCTACGTTATACATGTTGTTTATATGTAAATTAGCATTTACATTGGTAAACTTCATGTGGTAAGTAAAGTGACAAAGGAGGAACGAAAAGATATTTTATATGGTCCAGCAGAAACAACAAGAAAGAGATCAGAAACAGTTTAACAGAGTTCCTAGTTGTCTGACTGTTCCTGTTCCCAGTCACCTGTACGAGATACGCATGCGTGCATCAATAGAGTTTAGGAGTGCATATAGTTCTTTCATATTTGCATCCTAATATGTTCGTTATATGCATGTGTAATTAAGAGTCCATATTGGGATAAGTTGTTTATTAGACTTAGGACTTTGCATTAGTTTAGGTCTCTTATAATATCCTATCATAAGTACATATAGTTGTGTGTGATTAGGACTCTTCATATAGTTATATATGCATTAGGAGTCTTCTAGGAATGCATATCATAG GGTGCATCAGTTGTTATGCACCAAATAACTACGTACACACAAGGTTCCCTAGCTTTGAACGTATTCAGATATCTCAAGTTTAAGGAATAAGGAAAAATGGCTTCAGCACAGGCAATCGCAATGAATGACAAGGAGAAAGAAATGGTGGTTGCGATGGTAGAACAAGCAAAGAGCGTCGGCAAAACCAATAACATGAAATTGGGTGCTGTGAACCAGCAAGCTAATCAAAACAGTGCGGTTGTCTATATTAACAATAGCACCCCTGCAAAAATCAATTTTAACCAAAATTTGAATTGGGCAGGGAGTGTCATTGGTACCCCATATCCTACTACGATTACCGCCATGTCGTCGGCTTCCTTCACCCATGCTGCGCAGCCTATCGACGGCTCCAAAGGAGCCGTGGTGTACTTCGGCAGCAACAAGGACGGAATTCCTTCCGGATGGCTTTTGGCTTGGTTTGCACCCGCCAAAATGACCCCGACCAATCCTAATAGGGTACATGTTGAGTGTGGTCCCAGCGCTAAGTATGGTTCCGTAGATTGGGACGTAATCAAAGCTAGGCTTGATGTAGCAGACTCCTACAACAACCACTTTGACCCAGTTACTCATACCACCATTGCTGCCGAGATCACTCCAGGCGGCAGTTTCGCAGCGATTGGTGCGAATTTTGGAGTTTTTTAAATGAATTACTACTCCTAATAAGTATTACGGACGTAATTATGGGTTATTCCTAATGACTAATATGCATGGTAGCTCGATCTTATCCTTCCAATCAAGCTAAGCATATTAATTATTATATACGAATAATACTATTTCAATAATCATGGCCCTTGTATCTTTAATTTGTATTCCTAATGCTTATAAGTTATCATATTATATTTCTATTTCTATATTTGTTAATTGTTAATTGTTATGCGGAGTAAGGTATACTTCCACTACAAGAAAACGGAATTTTTTCGACCGCCATTTTCAGTCAATAAAAGGCTGAAAATAGTCGGTAAATGATTTTTTGTACGAAAATGGTCGGTAAAGGTAGTCGTTATTACCCTGGTAGAAGATTGAGTAAATTCCGACTGAAAAACAGTCGGTAAATTTTACCGCCTACTTTTTACAGTCTAAATTTAAAAATTGAACATGAATGACAACAAAATTACTATCAAAAATCTGATTACAAATTAAAGTAAAGGCGTGAGTTTGTGTTGAGTAGTGAGGTTTTGATGATTATAAACAAATGATGATTATCTAATTAACATGTGTGCTAAGATGTGCATAGGAAGAACAAGCTATGATTAAACCAAGAGACAAGGGACATGAGCAATGATAAGCTATTGTTGACGAGAGCGGAGATGGCTACGTTATACATGTTGTTTATATGTAAATTAGCATTTACATTGGTAAACTTCATGTGGTAAGTAAAGTGACAAAGGAGGAACGAAAAGATATTTTATATGGTCCAGCAGAAACAACAAGAAAGAGATCAGAAACAGTTTAACAGAGTTCCTAGTTGTCTGACTGTTCCTGTTCCCAGTCACCTGTACGAGATACGCATGCGTGCATCAATAGAGTTTAGGAGTGCATATAGTTCTTTCATATTTGCATCCTAATATGTTCGTTATATGCATGTGTAATTAAGAGTCCATATTGGGATAAGTTGTTTATTAGACTTAGGACTTTGCATTAGTTTAGGTCTCTTATAATATCCTATCATAAGTACATATAGTTGTGTGTGATTAGGACTCTTCATATAGTTATATATGCATTAGGAGTCTTCTAGGAATGCATATCATAG ATGGCTTCAGCACAGGCAATCGCAATGAATGACAAGGAGAAAGAAATGGTGGTTGCGATGGTAGAACAAGCAAAGAGCGTCGGCAAAACCAATAACATGAAATTGGGTGCTGTGAACCAGCAAGCTAATCAAAACAGTGCGGTTGTCTATATTAACAATAGCACCCCTGCAAAAATCAATTTTAACCAAAATTTGAATTGGGCAGGGAGTGTCATTGGTACCCCATATCCTACTACGATTACCGCCATGTCGTCGGCTTCCTTCACCCATGCTGCGCAGCCTATCGACGGCTCCAAAGGAGCCGTGGTGTACTTCGGCAGCAACAAGGACGGAATTCCTTCCGGATGGCTTTTGGCTTGGTTTGCACCCGCCAAAATGACCCCGACCAATCCTAATAGGGTACATGTTGAGTGTGGTCCCAGCGCTAAGTATGGTTCCGTAGATTGGGACGTAATCAAAGCTAGGCTTGATGTAGCAGACTCCTACAACAACCACTTTGACCCAGTTACTCATACCACCATTGCTGCCGAGATCACTCCAGGCGGCAGTTTCGCAGCGATTGGTGCGAATTTTGGAGTTTTTTAA MASAQAIAMNDKEKEMVVAMVEQAKSVGKTNNMKLGAVNQQANQNSAVVYINNSTPAKINFNQNLNWAGSVIGTPYPTTITAMSSASFTHAAQPIDGSKGAVVYFGSNKDGIPSGWLLAWFAPAKMTPTNPNRVHVECGPSAKYGSVDWDVIKARLDVADSYNNHFDPVTHTTIAAEITPGGSFAAIGANFGVF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15895.1 vs. NCBI nr
Match: gi|902164824|gb|KNA07007.1| (hypothetical protein SOVF_175870 [Spinacia oleracea]) HSP 1 Score: 388.7 bits (997), Expect = 6.200e-105 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
BLAST of Spo15895.1 vs. NCBI nr
Match: gi|902160430|gb|KNA06444.1| (hypothetical protein SOVF_181030 [Spinacia oleracea]) HSP 1 Score: 221.1 bits (562), Expect = 1.700e-54 Identity = 115/195 (58.97%), Postives = 150/195 (76.92%), Query Frame = 1
BLAST of Spo15895.1 vs. NCBI nr
Match: gi|902160431|gb|KNA06445.1| (hypothetical protein SOVF_181040 [Spinacia oleracea]) HSP 1 Score: 215.7 bits (548), Expect = 7.200e-53 Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 1
BLAST of Spo15895.1 vs. NCBI nr
Match: gi|1170595|sp|P42764.1|JIPH_ATRCA (RecName: Full=Jasmonate-induced protein homolog [Atriplex canescens]) HSP 1 Score: 186.0 bits (471), Expect = 6.100e-44 Identity = 98/193 (50.78%), Postives = 128/193 (66.32%), Query Frame = 1
BLAST of Spo15895.1 vs. NCBI nr
Match: gi|731322092|ref|XP_010671702.1| (PREDICTED: jasmonate-induced protein homolog [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 176.8 bits (447), Expect = 3.700e-41 Identity = 94/195 (48.21%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIC6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_175870 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 4.300e-105 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGM0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181030 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.200e-54 Identity = 115/195 (58.97%), Postives = 150/195 (76.92%), Query Frame = 1
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGU9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181040 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 5.000e-53 Identity = 113/195 (57.95%), Postives = 146/195 (74.87%), Query Frame = 1
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRM6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054010 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.600e-41 Identity = 94/195 (48.21%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FK11_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054000 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 9.800e-41 Identity = 94/195 (48.21%), Postives = 125/195 (64.10%), Query Frame = 1
BLAST of Spo15895.1 vs. ExPASy Swiss-Prot
Match: JIPH_ATRCA (Jasmonate-induced protein homolog OS=Atriplex canescens PE=2 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 3.800e-46 Identity = 98/193 (50.78%), Postives = 128/193 (66.32%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15895.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15895.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15895.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo15895.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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