Spo11309 (gene) | SpinachBase

Overview


Name	Spo11309
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 2, chloroplastic (Chlorophyll a-b protein 165) (CAB-165) (LHCII type I CAB-2) (Precursor)
Location	SpoScf_03459 : 19988 .. 24380 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGGCAAGTTCTTTCTTGATCCATTATCGTTTTTAAAAATAAAAAATAACATATAATCTTTTATGTATTACTTTGTTTCATATGGCATATAATAAGCTTAATTAGAGTTTTAAAAAGATTACAAAATGTCACACTTTCCAACATAAATACCAGATCATATTGTAAGGTTTGTTAAAAAAAATGAAACAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTTGATGGAAGGTATATTCTTTATACCTTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATATTTAGTCTCCTCCGTGCACCCGACTTCTAGAATCGCGTATGTAAGGGTAAAATTGTAATTTGTCATAGAGATCGCGCATGTTTTATCTCCATCGTTTTCTTATTTTTTTTCTTTTGAATCCATGTAAGTGGTATAACACTAATAATAATGTTCACCATAGTGACTAATGCTCACTCTTAGAGCTTAGTCCACAGTCTAAATTTCGCCACAATTAATCTTGGCATGGGATATCTAATACTAACACCAAATCCATCAAACAAGCGAGAATTGTTAAACATCAACTGGTCACCCTTATACAATCATTTGTAGTACCATTACATAATACAAAGTATGTCATTACCGATAACGCAAATGACTTGTAATGTCATACTTCCTCCAATCTTTTAATACTCGCAACGTTTGGACTTTTGTTACTATTCCTATAATCTACTTTGACTATTCTCAGTGCTTTTTATATAAGATAAAACATAGTCATATGCGATCTTGTTAGATTCGTCTCAATGTGTATTTTCAAAATATCAACTTTTTATAATTTTTGCATAAAAAGAATTTAAGATATAAATGATCAAAGTTGTGCAATTGGCATGCGTGAAACTAACAAACGTTGCGAGTATTAAAAGACGGGAGGAAGTATTATTTTCGATACAAATACCAAGTTAATGGTACCAATATGAGTCTATATGAACTCAAGTCATTTAGATACTTAGATCTCCTCCAAATAAGCACTCTTAAACTTCAATTCCTCAGTTTAGCTTAATACCAATCAATTCAATACAAGTATCAATTCAATTAATACACTTCAGGATGGATTATATATTGCAGCTCAGGACTCAGGTGATTAGCATTAAAATTAAACATTATAGTTTAACATTGTGATCATATTTGTGAAATAATTTATCACAAAGCATACATATCCACTAACAAAAATCAAAGCTCATCCTCCAACCTCAAATACTCACCAATATCACCTTGATGAATGACCACCATAGTTTGCGGGTCTGATTTACGAACATCCTTGGTCGATTTGGTGGCGATTCCGAAACCCAAAGGAACATCAGACATTGAATAAACAACAATACCATCACCACCATTTATATCTTCAGTAATCCTCCCTAAATGAGCCTTCAACACAGCATTCCCATACAAAAACGACATCTCTGAGGTCGGTTTAAGCCATACCTTGTGCTTCGCATTCGGGGCCAAGAGAGATAGAGCGTGAATTGTCAGATGGAAGTTCCCACTGTGGGTGAACTTCCCCACTTGTACACCCAGTGAAACCAGCAGCTCCTTCGAAACGTTTGTTGCGCGTTTCACGAGTGATTCACTAGCGTAGTACACACGATTCTTCTGGAGGCGGAAGCAGTACCGGCCTGGGAGCGGGTCTTGTGCGGGCCCTTCGTAGGATGGATTGTCGACGATGTTCTTGAGGTTGTTGCCGACGAACTTGAAGAGTTTCTCGAACACGATGGTGGTTTCTTGCTCGTCTAGGGTTCTCATGTTCTAGTACGATGGTGGTTATTGAGGCGGCGTCAACGGCGGCGATTAGGGTTTTAGGGAATACCGGTTCACTTTGGTCAAATTTGGGAGGGTTCAGACTTTAGAGAGAGATCACGTTTATTTTTAAGTCTCTACTTGATTTATTTTTATTGCTTTTGCCCCTTTGTATGTGTAAAGGTAAAATCTACCTATTACTATGGTGTAAAATTTTCCCGCCTAAAATATTTTTCAAAAATATATATATTTTTATTTTTTTATTATTCTCTACCTTTTTGTAAACTATCTTATACCCCCATAATGCAAAGTGCAGCTTCTGGGGCCAGTCTTTGTAATTGGTTGTCATTTTCATGATGATGGTTTTGACATTCTTGTTGGCTTCTTCGACTGCCCCATTAGTTTGCGGGCGATAAGGCGAAAAACGGTGATGTTGAATTTTGTACTCATTGAATAGATCTTCACACTCTCCTTGAAAATGGGTTCCCTGGTCGCTAATATGGAAAAAAAGTTAATAAATTATGGCAATAATAGATATCACGTGATAATAATTTTGCTAAATATTTTTTGATAATGTTTTAGTCAAATCGGTAGTATAGTAATGAAAAATATATTCACTCGATATGTCGATCAAATTAGCATATTACACATATATAATATGCATATTAGATTAATAAATTTAAATGAGTATGTTGATTTTTTTTTATAATTATGCAGTACTTTGGGGATATTTAGTTAAATATTTTATGAAAAATAATTATCATAATCCGTGCGTGCACGGGATCTAATCTAGTACTGTAGTACATAGAGATCACATTTGTTTTATCCCGCTTTTCTTTATTTTTGTGCAATTTTATTGTTTCTGATTAATTTCATATTATGTTTATGAAATTGCAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTAAGTCCACTTAAGACTTTTTTCCTTTACGAAATACTTTGACTTTTGACCCTATTCACAAATTTTAATTTGACTATCATTTATGATTTATAGGTAATAAAAAATATAGTCGTGTGGTATCTTGTTTGATTTGTCTCGATATATATACTTTCAAAATATCAACTTCTTATAATTTTTACGAATGCAAAAATAGAGATATTAATGTCTAAACATTTTCATTAGCAAGCGTGAAAAGTTAAATTGTCCCCATTATTTCGAAACGGAAGGAGTAAGTAACAAACACGCACGTGACATTAATTTTTGTGACGTACGGAGTATATTATTTAAAAACAACCCTCTAAGTCTATGATGGCTTGGATCCAAATACAACATCTTTAGTACCAACACAGAATATGTCAATACCAAAAACGAAAATGAAGTTAAAGTAGCTAACGAGTAGCTGAATAGGCTAGACTCATTATCATTTACTTGTATCAGTTATCACCCCTAGTTACAAAACTATGTAAAGGGTATCTAGTCAAATTGTACCATGTTTTAATTGAAATGTGGTGAAAGTGGAAGAATTAAGCAATTTTGTAGGCCAATGATTAGATACATTACCATTGTCAATATTAATTTCAATTTTCAAGAAAACGATGTTAAATAGATAATTCTATGTATGTAACTACGTACCATTACCATTATATATCCGGGTGTACCATGTATATACTATAAGGACACTCATTTTTTTGCTCATTTGCTTGTTTGATCAATCTCTTTGTAATGAACAAGTAGCAAAAAAAATTACGTTTGGATTTACGATACATATATCTGGATGGATGAACAATGGAAATTGTAGGTAAAAAATCTAATGATATGAGTTTTGTTATGGAATATGGACCCCAAAATCTGTAAATAATGTACATGACATTTAAACAGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTGTTATGGGAGCTTGGTTCCAACACATTTACACTGGGACTGGCCCAATTGATAACCTCTTTGCTCATCTTGCTGATCCTGGCCATGCCACTATTTTTTCTGTAAGTGTATTCATTTTCGCTTTTTATAA

mRNA sequence

ATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTTGATGGAAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTTGTATTCATTTTCGCTTTTTATAA

Coding sequence (CDS)

ATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTTGATGGAAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTTGTATTCATTTTCGCTTTTTATAA

Protein sequence

MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLACIHFRFL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo11309.1	Spo11309.1	mRNA

Homology

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BLAST of Spo11309.1 vs. NCBI nr
Match: gi|902233476|gb|KNA23071.1| (hypothetical protein SOVF_028160 [Spinacia oleracea])

HSP 1 Score: 481.5 bits (1238), Expect = 8.600e-133
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA
Sbjct: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 233

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BLAST of Spo11309.1 vs. NCBI nr
Match: gi|731317473|ref|XP_010669087.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 444.1 bits (1141), Expect = 1.500e-121
Identity = 209/233 (89.70%), Postives = 224/233 (96.14%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S+CASSA+TAVCASS SSQKKG+VLGAT+ASFLGGKKLRD+ KY+ P +S S SVSAA
Sbjct: 1   MASLCASSASTAVCASSHSSQKKGSVLGATKASFLGGKKLRDT-KYKAPTASKSLSVSAA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AAEPERPIWFPGSTPP WLDGSLP DFGFDPLGFGSDPETL+WMVQSE+VHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPPWLDGSLPGDFGFDPLGFGSDPETLKWMVQSELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKLGILNTPSWYTAGEL+YFTDTTTLF++E++LIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELEYFTDTTTLFIIEMILIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQK KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKTKELRTKEIKNGRLAMLA 232

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BLAST of Spo11309.1 vs. NCBI nr
Match: gi|731376404|ref|XP_010655886.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 407.1 bits (1045), Expect = 2.100e-110
Identity = 192/234 (82.05%), Postives = 211/234 (90.17%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVS-SNSFSVSA 60
           M+SVCASSA  AV   S SSQK G+V+GAT+ASFLGGK+L    K+  P + + SF+VSA
Sbjct: 1   MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRL-SLKKFTAPAAGTRSFTVSA 60

Query: 61  AAAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGA 120
           AAA+P RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETL+WMVQSEIVHCRWAMLGA
Sbjct: 61  AAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGA 120

Query: 121 AGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCV 180
           AGIFIPEFLTK+GILNTPSWYTAGEL+YFTD TTLF+VE++ IGWAEGRRWADI+KPGCV
Sbjct: 121 AGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCV 180

Query: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLA 233

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BLAST of Spo11309.1 vs. NCBI nr
Match: gi|697156549|ref|XP_009587026.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 405.6 bits (1041), Expect = 6.000e-110
Identity = 190/233 (81.55%), Postives = 210/233 (90.13%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S CASSA  AV  SS SSQK G+++GAT+ASFLGGK+LR  SKY  P  S S +VSA 
Sbjct: 1   MASACASSAIAAVAFSSPSSQKNGSIVGATKASFLGGKRLR-VSKYVAPAGSRSVAVSAV 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG  SDPE+L+W  Q+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLKWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTK+GILNTPSWYTAGE +YFTDTTTLFV+ELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. NCBI nr
Match: gi|698480194|ref|XP_009787153.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 403.7 bits (1036), Expect = 2.300e-109
Identity = 189/233 (81.12%), Postives = 210/233 (90.13%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S CASSA  AV  SS SSQK G+++GAT+ASFLGGK+LR  SK+  P  S S +VSA 
Sbjct: 1   MASACASSAIAAVAFSSPSSQKNGSIVGATKASFLGGKRLR-VSKHVAPAGSRSVAVSAV 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG  SDPE+L+W  Q+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLKWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTK+GILNTPSWYTAGE +YFTDTTTLFV+ELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232

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BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU56_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_028160 PE=3 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 6.000e-133
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA
Sbjct: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 233

[Close]

BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWG9_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g033010 PE=3 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.100e-121
Identity = 209/233 (89.70%), Postives = 224/233 (96.14%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S+CASSA+TAVCASS SSQKKG+VLGAT+ASFLGGKKLRD+ KY+ P +S S SVSAA
Sbjct: 1   MASLCASSASTAVCASSHSSQKKGSVLGATKASFLGGKKLRDT-KYKAPTASKSLSVSAA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AAEPERPIWFPGSTPP WLDGSLP DFGFDPLGFGSDPETL+WMVQSE+VHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPPWLDGSLPGDFGFDPLGFGSDPETLKWMVQSELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTKLGILNTPSWYTAGEL+YFTDTTTLF++E++LIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELEYFTDTTTLFIIEMILIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQK KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKTKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Match: D7TAY3_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_01s0010g03620 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 1.400e-110
Identity = 192/234 (82.05%), Postives = 211/234 (90.17%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVS-SNSFSVSA 60
           M+SVCASSA  AV   S SSQK G+V+GAT+ASFLGGK+L    K+  P + + SF+VSA
Sbjct: 1   MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRL-SLKKFTAPAAGTRSFTVSA 60

Query: 61  AAAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGA 120
           AAA+P RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETL+WMVQSEIVHCRWAMLGA
Sbjct: 61  AAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGA 120

Query: 121 AGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCV 180
           AGIFIPEFLTK+GILNTPSWYTAGEL+YFTD TTLF+VE++ IGWAEGRRWADI+KPGCV
Sbjct: 121 AGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCV 180

Query: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLA 233

[Close]

BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NGY3_GOSAR (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium arboreum GN=F383_01265 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 2.700e-109
Identity = 189/233 (81.12%), Postives = 207/233 (88.84%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLSGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R8N0_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_002G183400 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.600e-109
Identity = 189/233 (81.12%), Postives = 207/233 (88.84%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.200e-111
Identity = 188/233 (80.69%), Postives = 209/233 (89.70%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S CASS   AV  SS SSQK G+++GAT+ASFLGGK+LR  SK+  PV S S +VSA 
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLR-VSKFIAPVGSRSVAVSAV 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPE+L+W  Q+E+VH RWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPEFLTK+G+LNTPSWYTAGE +YFTDTTTLFV+ELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 4.800e-107
Identity = 181/233 (77.68%), Postives = 204/233 (87.55%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           M+S CASS   AV  SS SS++ G+++G T+ASFLGG++LR  SKY T  ++ S +    
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLR-VSKYSTTPTARSATTVCV 60

Query: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG  SDPE+LRW  Q+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180
           GIFIPE LTK+GILNTPSWYTAGE +YFTDTTTLF+VELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232

[Close]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 9.600e-100
Identity = 176/233 (75.54%), Postives = 191/233 (81.97%), Query Frame = 1


		  
Query: 2   SSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTP-VSSNSFSVSAA 61
           SS+CASSA  A+ + S                FLGGKKLR   K   P VS    SV A 
Sbjct: 3   SSLCASSAIAAISSPS----------------FLGGKKLRLKKKLTVPAVSRPDASVRAV 62

Query: 62  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 121
           AA+P+RPIWFPGSTPP WLDGSLP DFGFDPLG  SDP++L+W VQ+EIVHCRWAMLGAA
Sbjct: 63  AADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAA 122

Query: 122 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 181
           GIFIPEFLTK+GILNTPSWYTAGE +YFTD TTLFVVEL+LIGWAEGRRWADI+KPG VN
Sbjct: 123 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVN 182

Query: 182 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 183 TDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLA 219

[Close]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.700e-67
Identity = 126/241 (52.28%), Postives = 162/241 (67.22%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           ++S   S+ T +       +Q++ +V      S  GG+ +R+    R  V      VS+ 
Sbjct: 5   IASALTSTLTLSTSRVQNPTQRRPHVAST---SSTGGRLMRE----RLVVVRAGKEVSSV 64

Query: 61  AAE--PERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLG 120
                P+RP+WFPGS+PP WLDGSLP DFGFDPLG GSDP+TL+W  Q+E++H RWAML 
Sbjct: 65  CEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 124

Query: 121 AAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGC 180
             GI IPE L +LG +   SWY AG  +YF D+TTLFV ++VL+GWAEGRRWAD++KPG 
Sbjct: 125 VTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGS 184

Query: 181 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLACIHFR 240
           V+ +P +P+      DVGYPGGLWFD + WG GSP+ V  LRTKEIKNGRLAMLA + F 
Sbjct: 185 VDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFC 238

[Close]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.000e-48
Identity = 104/226 (46.02%), Postives = 134/226 (59.29%), Query Frame = 1


		  
Query: 16  SSASSQKKGNVLG--ATRASFLGGK--KLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFP 75
           ++ ++Q    + G    ++ FLGG   KL     +R    S S S    A + E   W P
Sbjct: 2   ATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGE---WLP 61

Query: 76  GSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKL 135
           G   P +L GSLP D GFDPLG   DPE LRW VQ+E+V+ RWAMLG AG+ +PE  T +
Sbjct: 62  GLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 121

Query: 136 GILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLT 195
           GI+N P WY AG+ +YF  ++TLFV+E +L  + E RRW DI  PG VN DPIF    L 
Sbjct: 122 GIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 181

Query: 196 GTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLACIHF 238
             +VGYPGG+ F+PL +         E + KEI NGRLAMLA + F
Sbjct: 182 AGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGF 218

[Close]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 364.4 bits (934), Expect = 5.400e-101
Identity = 176/233 (75.54%), Postives = 191/233 (81.97%), Query Frame = 1


		  
Query: 2   SSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTP-VSSNSFSVSAA 61
           SS+CASSA  A+ + S                FLGGKKLR   K   P VS    SV A 
Sbjct: 3   SSLCASSAIAAISSPS----------------FLGGKKLRLKKKLTVPAVSRPDASVRAV 62

Query: 62  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 121
           AA+P+RPIWFPGSTPP WLDGSLP DFGFDPLG  SDP++L+W VQ+EIVHCRWAMLGAA
Sbjct: 63  AADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAA 122

Query: 122 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 181
           GIFIPEFLTK+GILNTPSWYTAGE +YFTD TTLFVVEL+LIGWAEGRRWADI+KPG VN
Sbjct: 123 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVN 182

Query: 182 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLA 234
           TDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLA
Sbjct: 183 TDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLA 219

[Close]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 257.3 bits (656), Expect = 9.400e-69
Identity = 126/241 (52.28%), Postives = 162/241 (67.22%), Query Frame = 1


		  
Query: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60
           ++S   S+ T +       +Q++ +V      S  GG+ +R+    R  V      VS+ 
Sbjct: 5   IASALTSTLTLSTSRVQNPTQRRPHVAST---SSTGGRLMRE----RLVVVRAGKEVSSV 64

Query: 61  AAE--PERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLG 120
                P+RP+WFPGS+PP WLDGSLP DFGFDPLG GSDP+TL+W  Q+E++H RWAML 
Sbjct: 65  CEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 124

Query: 121 AAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGC 180
             GI IPE L +LG +   SWY AG  +YF D+TTLFV ++VL+GWAEGRRWAD++KPG 
Sbjct: 125 VTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGS 184

Query: 181 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLACIHFR 240
           V+ +P +P+      DVGYPGGLWFD + WG GSP+ V  LRTKEIKNGRLAMLA + F 
Sbjct: 185 VDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFC 238

[Close]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 191.8 bits (486), Expect = 4.800e-49
Identity = 95/208 (45.67%), Postives = 125/208 (60.10%), Query Frame = 1


		  
Query: 30  TRASFLGGKKLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFPGSTPPSWLDGSLPADFGF 89
           ++  FL G   R +         +S   S+   E ++  W PG   P +L GSL  D GF
Sbjct: 18  SKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGF 77

Query: 90  DPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGELDYFT 149
           DPLG   DPE L+W VQ+E+V+ RWAMLG AG+ +PE  TK+GI+N P WY AG+  YF 
Sbjct: 78  DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA 137

Query: 150 DTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 209
            ++TLFV+E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL + 
Sbjct: 138 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA 197

Query: 210 SGSPQKVKELRTKEIKNGRLAMLACIHF 238
                  +E + KE+ NGRLAMLA + F
Sbjct: 198 -----PTQEAKEKELANGRLAMLAFLGF 219

[Close]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 169.9 bits (429), Expect = 2.000e-42
Identity = 84/177 (47.46%), Postives = 109/177 (61.58%), Query Frame = 1


		  
Query: 65  ERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFI 124
           ER  W PG  PP +LDG+L  D+GFDPLG G DPE+L+W VQ+E+VH R+AMLG AGI  
Sbjct: 45  ERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILF 104

Query: 125 PEFLTKLGILNTPSWYTAGELDY-FTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDP 184
            + L   GI N P WY AG + + F  T TL VV+ +L+G+AE +R+ D + PG    + 
Sbjct: 105 TDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEG 164

Query: 185 IF---PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLACIHF 238
            F       L G + GYPGG   +PLG      Q   + + KEIKNGRLAM+A + F
Sbjct: 165 SFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGF 220

[Close]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3)

HSP 1 Score: 150.6 bits (379), Expect = 1.200e-36
Identity = 101/251 (40.24%), Postives = 138/251 (54.98%), Query Frame = 1


		  
Query: 9   ATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAAAAEP---- 68
           A  A+ +SS +S  +      T     G K +  +S+ ++     SF V AAA  P    
Sbjct: 2   AAQALVSSSLTSSVQ------TARQIFGSKPVASASQKKS-----SFVVKAAATPPVKQG 61

Query: 69  -ERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETL------RWMVQSEIVHCRWAML 128
             RP+WF  S   S+LDGSLP D+GFDPLG  SDPE        RW+   EI++ R+AML
Sbjct: 62  ANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAML 121

Query: 129 GAAGIFIPEFLTKLGILNTPS---WY------TAGELDYFTDTTTLFVVELVLIGWAEGR 188
           GAAG   PE L K G++   +   W+       AG   Y+ D  TLFV+E+ L+G+AE R
Sbjct: 122 GAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHR 181

Query: 189 RWADILKPGCVNTDPIFPNNK-LTGT-DVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKN 238
           R  D   PG +         K L G+ +  YPGG +F+PLG+G    + +KEL+ KE+KN
Sbjct: 182 RLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGK-DEKSLKELKLKEVKN 239

The following BLAST results are available for this feature:

BLAST of Spo11309.1 vs. NCBI nr
BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
BLAST of Spo11309.1 vs. TAIR (Arabidopsis)

BLAST of Spo11309.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233476\|gb\|KNA23071.1\|	8.6e-133	100.	hypothetical protein SOVF_0281...	[more]
gi\|731317473\|ref\|XP_010669087.1\|	1.5e-121	89.7	PREDICTED: chlorophyll a-b bin...	[more]
gi\|731376404\|ref\|XP_010655886.1\|	2.1e-110	82.0	PREDICTED: chlorophyll a-b bin...	[more]
gi\|697156549\|ref\|XP_009587026.1\|	6.0e-110	81.5	PREDICTED: chlorophyll a-b bin...	[more]
gi\|698480194\|ref\|XP_009787153.1\|	2.3e-109	81.1	PREDICTED: chlorophyll a-b bin...	[more]

BLAST of Spo11309.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RU56_SPIOL	6.0e-133	100.	Chlorophyll a-b binding protei...	[more]
A0A0J8CWG9_BETVU	1.1e-121	89.7	Chlorophyll a-b binding protei...	[more]
D7TAY3_VITVI	1.4e-110	82.0	Chlorophyll a-b binding protei...	[more]
A0A0B0NGY3_GOSAR	2.7e-109	81.1	Chlorophyll a-b binding protei...	[more]
A0A0D2R8N0_GOSRA	4.6e-109	81.1	Chlorophyll a-b binding protei...	[more]

BLAST of Spo11309.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CB12_PETHY	4.2e-111	80.6	Chlorophyll a-b binding protei...	[more]
CB12_SOLLC	4.8e-107	77.6	Chlorophyll a-b binding protei...	[more]
LHCA2_ARATH	9.6e-100	75.5	Photosystem I chlorophyll a/b-...	[more]
LHCA6_ARATH	1.7e-67	52.2	Photosystem I chlorophyll a/b-...	[more]
CB24_PEA	1.0e-48	46.0	Chlorophyll a-b binding protei...	[more]

BLAST of Spo11309.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G61470.1	5.4e-101	75.5	photosystem I light harvesting...	[more]
AT1G19150.1	9.4e-69	52.2	photosystem I light harvesting...	[more]
AT3G47470.1	4.8e-49	45.6	light-harvesting chlorophyll-p...	[more]
AT1G45474.1	2.0e-42	47.4	photosystem I light harvesting...	[more]
AT1G61520.1	1.2e-36	40.2	photosystem I light harvesting...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..233 score: 2.5E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 75..237 score: 1.6
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 67..237 score: 7.4
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 63..239 score: 1.57

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009657	plastid organization
biological_process	GO:0015979	photosynthesis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0015976	carbon utilization
biological_process	GO:0009987	cellular process
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006020	inositol metabolic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0008152	metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0044085	cellular component biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009783	photosystem II antenna complex
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004332	fructose-bisphosphate aldolase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14399	0.96	Barchart \| Table
Spo01116	0.71	Barchart \| Table
Spo16925	0.71	Barchart \| Table
Spo02381	0.70	Barchart \| Table
Spo19861	0.70	Barchart \| Table
Spo23141	0.70	Barchart \| Table
Spo11286	0.69	Barchart \| Table
Spo11304	0.69	Barchart \| Table
Spo01700	0.68	Barchart \| Table
Spo00194	0.67	Barchart \| Table
Spo06697	0.67	Barchart \| Table
Spo07195	0.66	Barchart \| Table
Spo25087	0.66	Barchart \| Table