Spo00528 (gene) | SpinachBase

Overview


Name	Spo00528
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	SpoScf_03517 : 6435 .. 6847 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAAGATAGTAGATTCAGAAGTTAAGCGTCATCAACATCAACACCACGACGAAGAGATGGAAGAAGAAGAAGAAGAAAGGAGGCGAGGTTGTCGGCCGATAGCATACATACTTGGATTCCCTTTTGCTGTCTCTGCTTTCCTTCTATCTCTTGCTGCTGGTATTGTTTGGATTCTTGGGTATGTTCACATTTCATCTTCCCCTTTACAATTAAAGCTAATTTTCATGAATCTGTTGACTAATTTACTGTTTCCTAACTTTGTTTAATTTTTTTCTGGTACAGGTCATTATTGAGTTACGTGTGCCCATGTCTGACCTGCTGTTCAGATCTTGCAAACAAAGCTATGGACATTATAAGGCTTCCTATTGATGTATTCATATGGTTTGTTGATAAAATTCCCTGCTGA

mRNA sequence

ATGAAAGGAAAGATAGTAGATTCAGAAGTTAAGCGTCATCAACATCAACACCACGACGAAGAGATGGAAGAAGAAGAAGAAGAAAGGAGGCGAGGTTGTCGGCCGATAGCATACATACTTGGATTCCCTTTTGCTGTCTCTGCTTTCCTTCTATCTCTTGCTGCTGGTATTGTTTGGATTCTTGGGTCATTATTGAGTTACGTGTGCCCATGTCTGACCTGCTGTTCAGATCTTGCAAACAAAGCTATGGACATTATAAGGCTTCCTATTGATGTATTCATATGGTTTGTTGATAAAATTCCCTGCTGA

Coding sequence (CDS)

ATGAAAGGAAAGATAGTAGATTCAGAAGTTAAGCGTCATCAACATCAACACCACGACGAAGAGATGGAAGAAGAAGAAGAAGAAAGGAGGCGAGGTTGTCGGCCGATAGCATACATACTTGGATTCCCTTTTGCTGTCTCTGCTTTCCTTCTATCTCTTGCTGCTGGTATTGTTTGGATTCTTGGGTCATTATTGAGTTACGTGTGCCCATGTCTGACCTGCTGTTCAGATCTTGCAAACAAAGCTATGGACATTATAAGGCTTCCTATTGATGTATTCATATGGTTTGTTGATAAAATTCCCTGCTGA

Protein sequence

MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo00528.1	Spo00528.1	mRNA

Homology

[Close]

BLAST of Spo00528.1 vs. NCBI nr
Match: gi|902224504|gb|KNA19806.1| (hypothetical protein SOVF_058070 [Spinacia oleracea])

HSP 1 Score: 206.8 bits (525), Expect = 1.700e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

		  
Query: 1   MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI 60
           MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI
Sbjct: 1   MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI 60

Query: 61  LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC 103
           LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC
Sbjct: 61  LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC 102

[Close]

BLAST of Spo00528.1 vs. NCBI nr
Match: gi|568831844|ref|XP_006470161.1| (PREDICTED: uncharacterized protein LOC102618586 [Citrus sinensis])

HSP 1 Score: 96.7 bits (239), Expect = 2.500e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP  +++G PFA  A LLSL   ++W+LGS+LS +CPC  CC+ LAN AMD+++LPI +
Sbjct: 4   CRPFGFLIGLPFAFIALLLSLVGAVIWLLGSVLSCLCPCCVCCAGLANIAMDLVKLPITI 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. NCBI nr
Match: gi|641830498|gb|KDO49585.1| (hypothetical protein CISIN_1g035095mg [Citrus sinensis])

HSP 1 Score: 96.3 bits (238), Expect = 3.300e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP  +++G PFA  A LLSL   ++W+LGS+LS +CPC  CC+ LAN AMD+++LPI +
Sbjct: 4   CRPFGFLIGLPFAFIALLLSLVGAVIWLLGSVLSCLCPCCICCAGLANIAMDLVKLPITI 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. NCBI nr
Match: gi|567908765|ref|XP_006446696.1| (hypothetical protein CICLE_v10017380mg [Citrus clementina])

HSP 1 Score: 96.3 bits (238), Expect = 3.300e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP  +++G PFA  A LLSL   ++W+LGS+LS +CPC  CC+ LAN AMD+++LPI +
Sbjct: 4   CRPFGFLIGLPFAFIALLLSLVGAVIWLLGSVLSCLCPCCICCAGLANIAMDLVKLPITI 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. NCBI nr
Match: gi|590691097|ref|XP_007043689.1| (Uncharacterized protein TCM_008212 [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 4.300e-17
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP+ ++LG PFA+ A +LS+   ++W+LG++LS +CPC  CC+ LAN AMD+I+LP+ V
Sbjct: 4   CRPLGFLLGLPFALVAVVLSVVGAVIWVLGTILSCLCPCCICCAGLANFAMDLIKLPVKV 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058070 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.200e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1

		  
Query: 1   MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI 60
           MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI
Sbjct: 1   MKGKIVDSEVKRHQHQHHDEEMEEEEEERRRGCRPIAYILGFPFAVSAFLLSLAAGIVWI 60

Query: 61  LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC 103
           LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC
Sbjct: 61  LGSLLSYVCPCLTCCSDLANKAMDIIRLPIDVFIWFVDKIPC 102

[Close]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Match: V4UCE7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017380mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP  +++G PFA  A LLSL   ++W+LGS+LS +CPC  CC+ LAN AMD+++LPI +
Sbjct: 4   CRPFGFLIGLPFAFIALLLSLVGAVIWLLGSVLSCLCPCCICCAGLANIAMDLVKLPITI 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Match: A0A067E6T1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035095mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP  +++G PFA  A LLSL   ++W+LGS+LS +CPC  CC+ LAN AMD+++LPI +
Sbjct: 4   CRPFGFLIGLPFAFIALLLSLVGAVIWLLGSVLSCLCPCCICCAGLANIAMDLVKLPITI 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Match: A0A061E3I1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008212 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-17
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP+ ++LG PFA+ A +LS+   ++W+LG++LS +CPC  CC+ LAN AMD+I+LP+ V
Sbjct: 4   CRPLGFLLGLPFALVAVVLSVVGAVIWVLGTILSCLCPCCICCAGLANFAMDLIKLPVKV 63

Query: 93  FIWFVDKIPC 103
             WF+D+IPC
Sbjct: 64  LRWFIDQIPC 73

[Close]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Match: W1PHH0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00058p00124800 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.700e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP+ +++G PFA+ A LLSL   +VW++GS+LS +CPC  CC+ LAN AM +I+LPI +
Sbjct: 4   CRPLGFLIGLPFALVALLLSLVGAVVWVIGSVLSCICPCCICCAGLANLAMALIKLPIKI 63

Query: 93  FIWFVDKIPC 103
             WF D IPC
Sbjct: 64  IRWFTDSIPC 73

[Close]

BLAST of Spo00528.1 vs. TAIR (Arabidopsis)
Match: AT2G20562.1 (unknown protein)

HSP 1 Score: 84.3 bits (207), Expect = 4.600e-17
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP+ +++G PFA+ A +L+L   ++WI+G++LS +CPC  C + LAN A+D+I+LPI V
Sbjct: 4   CRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIKV 63

Query: 93  FIWFVDKIPC 103
             WF   IPC
Sbjct: 64  LRWFTHSIPC 73

[Close]

BLAST of Spo00528.1 vs. TAIR (Arabidopsis)
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.500e-15
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1

		  
Query: 33  CRPIAYILGFPFAVSAFLLSLAAGIVWILGSLLSYVCPCLTCCSDLANKAMDIIRLPIDV 92
           CRP+ ++LG PFA  + LLS+   I+WI+G LLS +CPC  C + L   A+ +I+ PI V
Sbjct: 6   CRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIHV 65

Query: 93  FIWFVDKIPC 103
             WF+ KIPC
Sbjct: 66  MEWFMSKIPC 75

The following BLAST results are available for this feature:

BLAST of Spo00528.1 vs. NCBI nr
BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
BLAST of Spo00528.1 vs. ExPASy Swiss-Prot
BLAST of Spo00528.1 vs. TAIR (Arabidopsis)

BLAST of Spo00528.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902224504\|gb\|KNA19806.1\|	1.7e-50	100.	hypothetical protein SOVF_0580...	[more]
gi\|568831844\|ref\|XP_006470161.1\|	2.5e-17	54.2	PREDICTED: uncharacterized pro...	[more]
gi\|641830498\|gb\|KDO49585.1\|	3.3e-17	54.2	hypothetical protein CISIN_1g0...	[more]
gi\|567908765\|ref\|XP_006446696.1\|	3.3e-17	54.2	hypothetical protein CICLE_v10...	[more]
gi\|590691097\|ref\|XP_007043689.1\|	4.3e-17	52.8	Uncharacterized protein TCM_00...	[more]

BLAST of Spo00528.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RJV9_SPIOL	1.2e-50	100.	Uncharacterized protein OS=Spi...	[more]
V4UCE7_9ROSI	2.3e-17	54.2	Uncharacterized protein OS=Cit...	[more]
A0A067E6T1_CITSI	2.3e-17	54.2	Uncharacterized protein OS=Cit...	[more]
A0A061E3I1_THECC	3.0e-17	52.8	Uncharacterized protein OS=The...	[more]
W1PHH0_AMBTC	6.7e-17	54.2	Uncharacterized protein OS=Amb...	[more]

BLAST of Spo00528.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo00528.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G20562.1	4.6e-17	48.5	unknown protein	[more]
AT2G31090.1	2.5e-15	48.5	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 10..30 scor
None	No IPR available	PANTHER	PTHR33834	FAMILY NOT NAMED	coord: 24..102 score: 5.3
None	No IPR available	PANTHER	PTHR33834:SF4	SUBFAMILY NOT NAMED	coord: 24..102 score: 5.3

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13113	1.00	Barchart \| Table
Spo08552	0.68	Barchart \| Table
Spo14016	0.67	Barchart \| Table
Spo28267	0.67	Barchart \| Table
Spo17320	0.66	Barchart \| Table
Spo17880	0.65	Barchart \| Table