Spo17196 (gene) | SpinachBase

Overview


Name	Spo17196
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Structure-specific endonuclease subunit SLX1 homolog (3.1.-.-)
Location	SpoScf_03618 : 11845 .. 15213 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCTCAACGGTCAAAAAACTCGAAAAGTAAAAAAAGAACAAGAAGAGGTGAAGTGAGGAGAGAGAAAAACGATCAGAAAGTGAGAAAGATGAGCCGGAGAAGATCGGGGAAAGCAAAGCCGAAGAAGCAGAAACAAGATCAGGCAATAAAATGGCGTAGGAATCAGAAGAAATCGGAACAACCGACAGAAATAGTGAAGAAGGAGAAGTGTGAAGAAGGTGAAAAAACTCGGTTTTTTGGTTGCTATCTATTGACATCTCTCAGCCCTCGTTTCAAGGGTCATTCTTATATTGGGTCCGTTTTAATTTTTTACTTTAATTTCATGTTCTACAAATTTTACAAGTTTTGAATTTCTGGATATCCATTTTCGTTGATTAAATTTGAAAAAATAATGAACAAATTAGGTTTACTGTGAATCCAAAGCGACGGATTAGGCAACATAATGGGGAAATTACTAGCGGCGCTTTCAGGACGAAGAAGAAGCGTCCATGGGAAATGGTTCTTTGCATTCATGGTTTTCCAACTAATGTTGCTGCTCTTCAGGTTATCACTTTTTTCTTTTTTTATCCTTATAAATTACCCCCTTCTATTTGCTTTATTGATCATTAAGTTTGAAGTATAAATCATTATTATGAGTAAATCATAAATGGGATTTTCTTGAATTGAATCGGTGGATATAATTTGAGTTGTTTATTGCAAGATTGAATTTTGGTTATGATGTTTTTATTGAATTTGGGGTGGATAATTTGTGTGGTTGATTCCAAGATTGCATTTTGATTGTGATATTTTATTGAGTTGGGGGGTAAATTTGTTTGGTTTATTGCAAGATTTAATTTTGGTGACTATCTTTCATTAAATTGAGCGAATTTTCGGGTTTAATTGCTTGGTCTATTGCAAGATAGCATTTTGATGATGATCATTCATCGAAACAGTGGATTGCTCTTTTGATTATCTTAGTCTGGTTCATTGCAAGATTGCTCTTTTGATTATGACTTTACCCAATTGTAATTGCTTTTTCTTCTCATTTGCTCTGTTAATTTGGAGATCGCCCTGTAAAATTTTGTTTTTTTAATATATATTCTTCATGTATTCCTCAAGATATTTTTTCTTTTCATTTCTCCAATTTTGGTTGGTGTTGCAGTTTGAATGGGCATGGCAACATCCTAGAGAGTCAGTAGCAGTACGAGAGGCGGCTGCGAGCTTTAAAACCCTCGGAGGACTTGCCAACAAAATCAAACTTGCACTCACTATGCTTACTCTCCACTCTTGGCAAAGGTATAATATATTTTTCTTGTCGTTATGTTTCAGATCGTTTTAAATGATCCATTCAATTTCAATCTAATGTAGTAATGCTATGCTGAAACTAAAGAGTTTGAGTTGTGTTGTATTTTCAGTATGAACCTCAGAGTTAGTTTCTTCTCTACAAAGTATATGAAGCACGCTGCTGGGTGTCCAAGCTTGCCTCCCCATATGAAGCTCCATTTTTGTTCAATGGATGAGCTCCCTTGTTATGAGGATATTGACCAAACTTACGGTTGTGAGGATGGTGATGACTTAGACTCAACTAATAGTGAAGTTATGGCCAGCTGTTCTGATGACAGAATAGAATCTTTGTCTGATGGTTCAATGGAGATGAATCCTTCTTCAATTCATGTTCAAAACTTTACTGTACAAAAATCAGCTGATAACATCTTAGAAGAGGATTTCATAGGCATTGGTGGGCCATTGGAGAATGAGTCATCATTGATGATGGGCGCGCTGGAGGATCATATACAACCACTGCATCAATTTCCTGTTGATGTTAGTGGCTCTACTCTGAACACCTCGAATGAGCAGTTGCGACATTGTGAAGAGATCTGGACTGAGGATGTTAGAGCCTCTTTCCCGGAATTAGAGGAACGTATACAATATATTGGTGGCATTTATGCTTCTGAGAATGAGGTGTTTCCTGTTCTTGAGGAAAATTATTCTTCTGGTGACTTGCCTGCTGATGTTACTGCCCATGTTGAGAATGATTTGAGTGAGTGTTCAACACCTGGAAAAGAAATTAGGCCCAAGAAGCTGAGAGGTTCTTCCCCTATAATAGAAGAGCGTATACAGCCATTTCAGCAAGCTGGTTCTTCAGAGAGAGAACAATCTTCAATGGTCGATTTTGCCAAGAAAGACGAAATAACATGTATAGTAATCGATGATATCAGCGACAAACCAACAAGGGTTCAATCGCCTATTAGATTTGCCAATATTGTTTGGCCATTTTCTAATGAGGGGATTGAGGTTATAGAACTTTGTACGCCTTCACCTGACTATAGAATCGCTGTAGGTAGCAAGAAAAGAAGAGCTGCCAGTGATATAATTGACCTGACTGGATCACCTTGTTTTATCCAACTGTAGAATGTTGAAATGCTTTCGTTGGATACCTAATCATCTACTTATGGGAATTCCTCTTCTTGAAAAGCCGGCATTGCTTGCTCTGTCATCATTCAGCCTGGGTAAGAGATGAAAGTTGTGTCCTCAAACTCACCTTGTTCTTCCTTGACATCAGCATGTTCGGAACATAATCCTCAACCATCAATAATGGTCTCATTATCCATCCATCTGGTGTGTTCCATTTCTTAGAGGTTTGTCAAATTTCATTTATTTAATTATTGTCTTAGCATGTAATGGTCCTAGAATACCCGTTGTATTACAGAATAAAGTGTGTAAATAGTTCCAAATATGTAATAATGAAATTTTTTAATTAATAATCACCGTGTCTAATTTTAAAAAATACAAGTAATTAATTAAAGACCTTGTTATATTTTATTGTGTATGTAGTCACACAAAAACTAATTACAATCGTTTAGGATAATCCTCTGAAATTAACTTGAAATGGTGGTCAAAAGTTGAGATGATCAATAATACACCTCTAGTTGTGCTTGTCATTGTGGTAAACTTAAAAGCTTAAGGGGCCTGTGGTAAATAAGTATATAAGAAGCTCAGGGGGCCTGCACTTGTGCAGCAAAGATATAAGAATCTCTTATTGGGGCAATGTTAAAGATGGCAAGGAGAGCTGTTGAGCTGTGTTTATTCAACTCCTGGGGAGTGTGGGGTATGTCTGTGTTTTCTGTGGAAGGGAGGGAGCCTTGTACCTTTCTTTGAGAGAATTTGACATGTTAGACTTGACAATAGTTTTACCCGACCTCATAAGTCATAACTCCTTCAGACGTGCCCACAAAAATTAGGCTATTCAACTCTATTTTCGACCCTAATATCTGAAATAACCCCCAAATAATAACTCAAAAGCAACCAGAAAACCGGCTTTAATCTAAATTAATCAGACCCAAATCCAAATCTCAGCCCACCGGCGTGGCACTGGAAAATAAATAAAA

mRNA sequence

TATCTCAACGGTCAAAAAACTCGAAAAGTAAAAAAAGAACAAGAAGAGGTGAAGTGAGGAGAGAGAAAAACGATCAGAAAGTGAGAAAGATGAGCCGGAGAAGATCGGGGAAAGCAAAGCCGAAGAAGCAGAAACAAGATCAGGCAATAAAATGGCGTAGGAATCAGAAGAAATCGGAACAACCGACAGAAATAGTGAAGAAGGAGAAGTGTGAAGAAGGTGAAAAAACTCGGTTTTTTGGTTGCTATCTATTGACATCTCTCAGCCCTCGTTTCAAGGGTCATTCTTATATTGGGTTTACTGTGAATCCAAAGCGACGGATTAGGCAACATAATGGGGAAATTACTAGCGGCGCTTTCAGGACGAAGAAGAAGCGTCCATGGGAAATGGTTCTTTGCATTCATGGTTTTCCAACTAATGTTGCTGCTCTTCAGTTTGAATGGGCATGGCAACATCCTAGAGAGTCAGTAGCAGTACGAGAGGCGGCTGCGAGCTTTAAAACCCTCGGAGGACTTGCCAACAAAATCAAACTTGCACTCACTATGCTTACTCTCCACTCTTGGCAAAGTATGAACCTCAGAGTTAGTTTCTTCTCTACAAAGTATATGAAGCACGCTGCTGGGTGTCCAAGCTTGCCTCCCCATATGAAGCTCCATTTTTGTTCAATGGATGAGCTCCCTTGTTATGAGGATATTGACCAAACTTACGGTTGTGAGGATGGTGATGACTTAGACTCAACTAATAGTGAAGTTATGGCCAGCTGTTCTGATGACAGAATAGAATCTTTGTCTGATGGTTCAATGGAGATGAATCCTTCTTCAATTCATGTTCAAAACTTTACTGTACAAAAATCAGCTGATAACATCTTAGAAGAGGATTTCATAGGCATTGGTGGGCCATTGGAGAATGAGTCATCATTGATGATGGGCGCGCTGGAGGATCATATACAACCACTGCATCAATTTCCTGTTGATGTTAGTGGCTCTACTCTGAACACCTCGAATGAGCAGTTGCGACATTGTGAAGAGATCTGGACTGAGGATGTTAGAGCCTCTTTCCCGGAATTAGAGGAACGTATACAATATATTGGTGGCATTTATGCTTCTGAGAATGAGGTGTTTCCTGTTCTTGAGGAAAATTATTCTTCTGGTGACTTGCCTGCTGATGTTACTGCCCATGTTGAGAATGATTTGAGTGAGTGTTCAACACCTGGAAAAGAAATTAGGCCCAAGAAGCTGAGAGGTTCTTCCCCTATAATAGAAGAGCGTATACAGCCATTTCAGCAAGCTGGTTCTTCAGAGAGAGAACAATCTTCAATGGTCGATTTTGCCAAGAAAGACGAAATAACATGTATAGTAATCGATGATATCAGCGACAAACCAACAAGGGTTCAATCGCCTATTAGATTTGCCAATATTGTTTGGCCATTTTCTAATGAGGGGATTGAGGTTATAGAACTTTGTACGCCTTCACCTGACTATAGAATCGCTGTAGGTAGCAAGAAAAGAAGAGCTGCCAGTGATATAATTGACCTGACTGGATCACCTTGTTTTATCCAACTGTAGAATGTTGAAATGCTTTCGTTGGATACCTAATCATCTACTTATGGGAATTCCTCTTCTTGAAAAGCCGGCATTGCTTGCTCTGTCATCATTCAGCCTGGGTAAGAGATGAAAGTTGTGTCCTCAAACTCACCTTGTTCTTCCTTGACATCAGCATGTTCGGAACATAATCCTCAACCATCAATAATGGTCTCATTATCCATCCATCTGGTGTGTTCCATTTCTTAGAGGTTTGTCAAATTTCATTTATTTAATTATTGTCTTAGCATGTAATGGTCCTAGAATACCCGTTGTATTACAGAATAAAGTGTGTAAATAGTTCCAAATATGTAATAATGAAATTTTTTAATTAATAATCACCGTGTCTAATTTTAAAAAATACAAGTAATTAATTAAAGACCTTGTTATATTTTATTGTGTATGTAGTCACACAAAAACTAATTACAATCGTTTAGGATAATCCTCTGAAATTAACTTGAAATGGTGGTCAAAAGTTGAGATGATCAATAATACACCTCTAGTTGTGCTTGTCATTGTGGTAAACTTAAAAGCTTAAGGGGCCTGTGGTAAATAAGTATATAAGAAGCTCAGGGGGCCTGCACTTGTGCAGCAAAGATATAAGAATCTCTTATTGGGGCAATGTTAAAGATGGCAAGGAGAGCTGTTGAGCTGTGTTTATTCAACTCCTGGGGAGTGTGGGGTATGTCTGTGTTTTCTGTGGAAGGGAGGGAGCCTTGTACCTTTCTTTGAGAGAATTTGACATGTTAGACTTGACAATAGTTTTACCCGACCTCATAAGTCATAACTCCTTCAGACGTGCCCACAAAAATTAGGCTATTCAACTCTATTTTCGACCCTAATATCTGAAATAACCCCCAAATAATAACTCAAAAGCAACCAGAAAACCGGCTTTAATCTAAATTAATCAGACCCAAATCCAAATCTCAGCCCACCGGCGTGGCACTGGAAAATAAATAAAA

Coding sequence (CDS)

ATGAGCCGGAGAAGATCGGGGAAAGCAAAGCCGAAGAAGCAGAAACAAGATCAGGCAATAAAATGGCGTAGGAATCAGAAGAAATCGGAACAACCGACAGAAATAGTGAAGAAGGAGAAGTGTGAAGAAGGTGAAAAAACTCGGTTTTTTGGTTGCTATCTATTGACATCTCTCAGCCCTCGTTTCAAGGGTCATTCTTATATTGGGTTTACTGTGAATCCAAAGCGACGGATTAGGCAACATAATGGGGAAATTACTAGCGGCGCTTTCAGGACGAAGAAGAAGCGTCCATGGGAAATGGTTCTTTGCATTCATGGTTTTCCAACTAATGTTGCTGCTCTTCAGTTTGAATGGGCATGGCAACATCCTAGAGAGTCAGTAGCAGTACGAGAGGCGGCTGCGAGCTTTAAAACCCTCGGAGGACTTGCCAACAAAATCAAACTTGCACTCACTATGCTTACTCTCCACTCTTGGCAAAGTATGAACCTCAGAGTTAGTTTCTTCTCTACAAAGTATATGAAGCACGCTGCTGGGTGTCCAAGCTTGCCTCCCCATATGAAGCTCCATTTTTGTTCAATGGATGAGCTCCCTTGTTATGAGGATATTGACCAAACTTACGGTTGTGAGGATGGTGATGACTTAGACTCAACTAATAGTGAAGTTATGGCCAGCTGTTCTGATGACAGAATAGAATCTTTGTCTGATGGTTCAATGGAGATGAATCCTTCTTCAATTCATGTTCAAAACTTTACTGTACAAAAATCAGCTGATAACATCTTAGAAGAGGATTTCATAGGCATTGGTGGGCCATTGGAGAATGAGTCATCATTGATGATGGGCGCGCTGGAGGATCATATACAACCACTGCATCAATTTCCTGTTGATGTTAGTGGCTCTACTCTGAACACCTCGAATGAGCAGTTGCGACATTGTGAAGAGATCTGGACTGAGGATGTTAGAGCCTCTTTCCCGGAATTAGAGGAACGTATACAATATATTGGTGGCATTTATGCTTCTGAGAATGAGGTGTTTCCTGTTCTTGAGGAAAATTATTCTTCTGGTGACTTGCCTGCTGATGTTACTGCCCATGTTGAGAATGATTTGAGTGAGTGTTCAACACCTGGAAAAGAAATTAGGCCCAAGAAGCTGAGAGGTTCTTCCCCTATAATAGAAGAGCGTATACAGCCATTTCAGCAAGCTGGTTCTTCAGAGAGAGAACAATCTTCAATGGTCGATTTTGCCAAGAAAGACGAAATAACATGTATAGTAATCGATGATATCAGCGACAAACCAACAAGGGTTCAATCGCCTATTAGATTTGCCAATATTGTTTGGCCATTTTCTAATGAGGGGATTGAGGTTATAGAACTTTGTACGCCTTCACCTGACTATAGAATCGCTGTAGGTAGCAAGAAAAGAAGAGCTGCCAGTGATATAATTGACCTGACTGGATCACCTTGTTTTATCCAACTGTAG

Protein sequence

MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEMNPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGSTLNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADVTAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEITCIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDIIDLTGSPCFIQL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo17196.1	Spo17196.1	mRNA

Homology

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BLAST of Spo17196.1 vs. NCBI nr
Match: gi|902237432|gb|KNA24796.1| (hypothetical protein SOVF_012410 [Spinacia oleracea])

HSP 1 Score: 989.9 bits (2558), Expect = 1.500e-285
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 1


		  
Query: 1   MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP 60
           MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP
Sbjct: 1   MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP 60

Query: 61  RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW 120
           RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW
Sbjct: 61  RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW 120

Query: 121 QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP 180
           QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP
Sbjct: 121 QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP 180

Query: 181 SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM 240
           SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM
Sbjct: 181 SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM 240

Query: 241 NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST 300
           NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST
Sbjct: 241 NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST 300

Query: 301 LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV 360
           LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV
Sbjct: 301 LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV 360

Query: 361 TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT 420
           TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT
Sbjct: 361 TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT 420

Query: 421 CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII 480
           CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII
Sbjct: 421 CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII 480

Query: 481 DLTGSPCFIQL 492
           DLTGSPCFIQL
Sbjct: 481 DLTGSPCFIQL 491

[Close]

BLAST of Spo17196.1 vs. NCBI nr
Match: gi|731349388|ref|XP_010685968.1| (PREDICTED: uncharacterized protein LOC104900278 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 604.0 bits (1556), Expect = 2.400e-169
Identity = 327/511 (63.99%), Postives = 385/511 (75.34%), Query Frame = 1


		  
Query: 3   RRRSGKAKPKKQKQDQAIKWRRNQK-------KSEQP----TEIVKKEKCEEGEKTRFFG 62
           RRRSGK K K+QKQD+AIKW R Q+       KS  P    +E+ +K+K E+G   +F+G
Sbjct: 2   RRRSGKTK-KQQKQDEAIKWSRQQRLQKSKSLKSSTPMSIDSELGEKDKSEDGG-FKFYG 61

Query: 63  CYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNV 122
           CYLLTS++PRFKGH+YIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEM+LCIHGFPTNV
Sbjct: 62  CYLLTSVNPRFKGHTYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMILCIHGFPTNV 121

Query: 123 AALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTK 182
           AALQFEWAWQHPRES+AVREAAASFKTLGGLANKIKL LTMLTLH+WQSM+L+VSFFSTK
Sbjct: 122 AALQFEWAWQHPRESLAVREAAASFKTLGGLANKIKLGLTMLTLHTWQSMDLKVSFFSTK 181

Query: 183 YMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIE 242
           YM HAAGCPSLP  MKLHFCSMDELPCY D D  YG +D DD DS +++  A+CSD+ IE
Sbjct: 182 YMNHAAGCPSLPHQMKLHFCSMDELPCYWDGDLPYGHDDEDDFDSNDNQESANCSDELIE 241

Query: 243 SLSDGSMEMNPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLH- 302
           S SDGSMEMNPSSIHV++  +QKS+DN+  ED I  GGPLE+ES  + G LE+H+QPLH 
Sbjct: 242 SSSDGSMEMNPSSIHVESCNIQKSSDNLSVEDCIAFGGPLESESLPVAGVLEEHMQPLHD 301

Query: 303 -QFPV-DVSGSTLNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLE 362
            Q PV DV GS ++T N+Q + CEEI  ED R  FP  EE I  +G  +ASE E+ PV+E
Sbjct: 302 YQLPVDDVCGSPVDTLNKQFQPCEEICIEDFRGYFPVSEENIHPVGRYHASEKELSPVVE 361

Query: 363 ENYSSGDLPADVTAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQS 422
           EN  S  LPADV A   N+LSE    GK    +KLR   P I+  IQ  ++AG SE    
Sbjct: 362 ENQLSSHLPADVPASTGNNLSEVLRIGKNTGAEKLRCCFPKIDNHIQSLEEAGPSEMVDC 421

Query: 423 SMV--DFAKKDEITCIVIDDISD---KPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPD 482
           + V  D  KKD  TC+VI+DI++   KP R+QSPIRF N   P+S+EGIEVIELCTPSP+
Sbjct: 422 ASVAEDTGKKDNATCVVINDITEEQFKPIRLQSPIRFTNTSRPYSDEGIEVIELCTPSPN 481

Query: 483 YRIAVGSKKRRAASD---IIDLTGSPCFIQL 492
            RI  GSKK+RAAS+    IDLT SP  +QL
Sbjct: 482 LRICKGSKKKRAASNYPHFIDLTESPSVVQL 510

[Close]

BLAST of Spo17196.1 vs. NCBI nr
Match: gi|743897055|ref|XP_011041810.1| (PREDICTED: uncharacterized protein LOC105137678 [Populus euphratica])

HSP 1 Score: 282.0 bits (720), Expect = 2.100e-72
Identity = 154/312 (49.36%), Postives = 199/312 (63.78%), Query Frame = 1


		  
Query: 23  RRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHN 82
           R+ + +   P EIV++ +  E  K  FF CYLLTSL PRFKGH+YIGFTVNP+RRIRQHN
Sbjct: 3   RKRKPQKNPPQEIVEEGEAAEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN 62

Query: 83  GEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGL 142
           GE+ SGA RTKK+RPWEMV+C++GFPTNVAALQFEWAWQHP ESVAVR+AAA+FK+  G+
Sbjct: 63  GELRSGACRTKKRRPWEMVICVYGFPTNVAALQFEWAWQHPTESVAVRQAAAAFKSFSGV 122

Query: 143 ANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDI 202
           ANKIKLA TML L SWQS+N+ V++FSTKY  H+AGCPSLP +MK+  C M+ELPCY D+
Sbjct: 123 ANKIKLAYTMLNLPSWQSLNITVNYFSTKYKVHSAGCPSLPKNMKVQICPMNELPCYSDL 182

Query: 203 DQTYGCEDGDDLDSTNSEVM-------ASCSDDRIESLSDGSMEMNPSSIHVQNFTVQKS 262
           D     E+ DD D+ + E         +   D  +  L D SM+  P     +    +  
Sbjct: 183 DDNL-FEERDDEDAWDGEEEYERASDGSGMVDANLVELDDSSMDKVPCYNGREEIIFEGE 242

Query: 263 ADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGSTLNTSNEQLRHCEEIW 322
                  +     GP+ N++    G     ++  H    D + S   TS+EQ++  EE  
Sbjct: 243 YGETENREACNSSGPV-NKTFNECGNTCGTVKETHADATDCAHSIEKTSDEQIKWLEEYD 302

Query: 323 TEDVR-ASFPEL 327
            +D R  S PEL
Sbjct: 303 QQDQREPSSPEL 312

[Close]

BLAST of Spo17196.1 vs. NCBI nr
Match: gi|460402944|ref|XP_004246967.1| (PREDICTED: uncharacterized protein LOC101267927 [Solanum lycopersicum])

HSP 1 Score: 275.8 bits (704), Expect = 1.500e-70
Identity = 127/178 (71.35%), Postives = 151/178 (84.83%), Query Frame = 1


		  
Query: 27  KKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEIT 86
           K+ EQ     + ++ +E E +RFF CYLLTS+ PRFKGH+YIGFTVNP+RRIRQHNGE+ 
Sbjct: 3   KRKEQKKVCHRDDEDKEVEGSRFFACYLLTSMCPRFKGHTYIGFTVNPRRRIRQHNGEVR 62

Query: 87  SGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKI 146
            GA RTK+KRPWEM+LCI+GFPTNV+ALQFEWAWQHP ES AVR+AAASFKTLGG+ANKI
Sbjct: 63  MGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKTLGGVANKI 122

Query: 147 KLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQ 205
           KLA TMLTL  WQS+NL V+FFSTKY  H+AGCPSLP HM++H C++DELPCY  ID+
Sbjct: 123 KLAYTMLTLPEWQSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPCYTGIDR 180

[Close]

BLAST of Spo17196.1 vs. NCBI nr
Match: gi|565391169|ref|XP_006361297.1| (PREDICTED: structure-specific endonuclease subunit SLX1 [Solanum tuberosum])

HSP 1 Score: 274.6 bits (701), Expect = 3.300e-70
Identity = 147/266 (55.26%), Postives = 183/266 (68.80%), Query Frame = 1


		  
Query: 21  KWRRNQKK--SEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRI 80
           K RR QKK  SE   E       +E E+ RFF CYLLTS+ PRFKGH+YIGFTVNP+RRI
Sbjct: 24  KERREQKKVCSEGGDE------SKEVEENRFFACYLLTSMCPRFKGHTYIGFTVNPRRRI 83

Query: 81  RQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKT 140
           RQHNGE+  GA RTK+KRPWEM+LCI+GFPTNV+ALQFEWAWQHP ES AVR+AAASFKT
Sbjct: 84  RQHNGEVRMGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKT 143

Query: 141 LGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPC 200
           LGG+ANKIKLA  MLTL  WQS+NL V+FFSTKY  H+AGCPSLP HM++H C++DELPC
Sbjct: 144 LGGVANKIKLAYAMLTLPEWQSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPC 203

Query: 201 YEDIDQ-TYGCEDGDDLDSTNSEVMASC--SDDRIESLSDGSMEMNPSSIHVQNFTVQKS 260
           Y  ID+  Y   + ++ +    E+ AS   S+    +    S + N           +++
Sbjct: 204 YTGIDRDEYSTNEWENSEELTDEISASSTNSNSSFSNQDKDSTDENDDEHTDWKELDERA 263

Query: 261 ADNIL---EEDFIGIGGPLENESSLM 279
            +N     E  +I I  P+E  SS++
Sbjct: 264 GENSTCGREHSYIIIDSPVERSSSIL 283

[Close]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ54_SPIOL (Structure-specific endonuclease subunit SLX1 homolog OS=Spinacia oleracea GN=SOVF_012410 PE=3 SV=1)

HSP 1 Score: 989.9 bits (2558), Expect = 1.100e-285
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 1


		  
Query: 1   MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP 60
           MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP
Sbjct: 1   MSRRRSGKAKPKKQKQDQAIKWRRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSP 60

Query: 61  RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW 120
           RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW
Sbjct: 61  RFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAW 120

Query: 121 QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP 180
           QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP
Sbjct: 121 QHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCP 180

Query: 181 SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM 240
           SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM
Sbjct: 181 SLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEM 240

Query: 241 NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST 300
           NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST
Sbjct: 241 NPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLHQFPVDVSGST 300

Query: 301 LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV 360
           LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV
Sbjct: 301 LNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLEENYSSGDLPADV 360

Query: 361 TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT 420
           TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT
Sbjct: 361 TAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQSSMVDFAKKDEIT 420

Query: 421 CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII 480
           CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII
Sbjct: 421 CIVIDDISDKPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPDYRIAVGSKKRRAASDII 480

Query: 481 DLTGSPCFIQL 492
           DLTGSPCFIQL
Sbjct: 481 DLTGSPCFIQL 491

[Close]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZJ5_BETVU (Structure-specific endonuclease subunit SLX1 homolog OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175710 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 1.600e-169
Identity = 327/511 (63.99%), Postives = 385/511 (75.34%), Query Frame = 1


		  
Query: 3   RRRSGKAKPKKQKQDQAIKWRRNQK-------KSEQP----TEIVKKEKCEEGEKTRFFG 62
           RRRSGK K K+QKQD+AIKW R Q+       KS  P    +E+ +K+K E+G   +F+G
Sbjct: 2   RRRSGKTK-KQQKQDEAIKWSRQQRLQKSKSLKSSTPMSIDSELGEKDKSEDGG-FKFYG 61

Query: 63  CYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNV 122
           CYLLTS++PRFKGH+YIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEM+LCIHGFPTNV
Sbjct: 62  CYLLTSVNPRFKGHTYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMILCIHGFPTNV 121

Query: 123 AALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFFSTK 182
           AALQFEWAWQHPRES+AVREAAASFKTLGGLANKIKL LTMLTLH+WQSM+L+VSFFSTK
Sbjct: 122 AALQFEWAWQHPRESLAVREAAASFKTLGGLANKIKLGLTMLTLHTWQSMDLKVSFFSTK 181

Query: 183 YMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDDRIE 242
           YM HAAGCPSLP  MKLHFCSMDELPCY D D  YG +D DD DS +++  A+CSD+ IE
Sbjct: 182 YMNHAAGCPSLPHQMKLHFCSMDELPCYWDGDLPYGHDDEDDFDSNDNQESANCSDELIE 241

Query: 243 SLSDGSMEMNPSSIHVQNFTVQKSADNILEEDFIGIGGPLENESSLMMGALEDHIQPLH- 302
           S SDGSMEMNPSSIHV++  +QKS+DN+  ED I  GGPLE+ES  + G LE+H+QPLH 
Sbjct: 242 SSSDGSMEMNPSSIHVESCNIQKSSDNLSVEDCIAFGGPLESESLPVAGVLEEHMQPLHD 301

Query: 303 -QFPV-DVSGSTLNTSNEQLRHCEEIWTEDVRASFPELEERIQYIGGIYASENEVFPVLE 362
            Q PV DV GS ++T N+Q + CEEI  ED R  FP  EE I  +G  +ASE E+ PV+E
Sbjct: 302 YQLPVDDVCGSPVDTLNKQFQPCEEICIEDFRGYFPVSEENIHPVGRYHASEKELSPVVE 361

Query: 363 ENYSSGDLPADVTAHVENDLSECSTPGKEIRPKKLRGSSPIIEERIQPFQQAGSSEREQS 422
           EN  S  LPADV A   N+LSE    GK    +KLR   P I+  IQ  ++AG SE    
Sbjct: 362 ENQLSSHLPADVPASTGNNLSEVLRIGKNTGAEKLRCCFPKIDNHIQSLEEAGPSEMVDC 421

Query: 423 SMV--DFAKKDEITCIVIDDISD---KPTRVQSPIRFANIVWPFSNEGIEVIELCTPSPD 482
           + V  D  KKD  TC+VI+DI++   KP R+QSPIRF N   P+S+EGIEVIELCTPSP+
Sbjct: 422 ASVAEDTGKKDNATCVVINDITEEQFKPIRLQSPIRFTNTSRPYSDEGIEVIELCTPSPN 481

Query: 483 YRIAVGSKKRRAASD---IIDLTGSPCFIQL 492
            RI  GSKK+RAAS+    IDLT SP  +QL
Sbjct: 482 LRICKGSKKKRAASNYPHFIDLTESPSVVQL 510

[Close]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Match: K4CSN5_SOLLC (Structure-specific endonuclease subunit SLX1 homolog OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.000e-70
Identity = 127/178 (71.35%), Postives = 151/178 (84.83%), Query Frame = 1


		  
Query: 27  KKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEIT 86
           K+ EQ     + ++ +E E +RFF CYLLTS+ PRFKGH+YIGFTVNP+RRIRQHNGE+ 
Sbjct: 3   KRKEQKKVCHRDDEDKEVEGSRFFACYLLTSMCPRFKGHTYIGFTVNPRRRIRQHNGEVR 62

Query: 87  SGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKI 146
            GA RTK+KRPWEM+LCI+GFPTNV+ALQFEWAWQHP ES AVR+AAASFKTLGG+ANKI
Sbjct: 63  MGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKTLGGVANKI 122

Query: 147 KLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQ 205
           KLA TMLTL  WQS+NL V+FFSTKY  H+AGCPSLP HM++H C++DELPCY  ID+
Sbjct: 123 KLAYTMLTLPEWQSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPCYTGIDR 180

[Close]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Match: M1BVG2_SOLTU (Structure-specific endonuclease subunit SLX1 homolog OS=Solanum tuberosum GN=PGSC0003DMG400020864 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.300e-70
Identity = 147/266 (55.26%), Postives = 183/266 (68.80%), Query Frame = 1


		  
Query: 21  KWRRNQKK--SEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRI 80
           K RR QKK  SE   E       +E E+ RFF CYLLTS+ PRFKGH+YIGFTVNP+RRI
Sbjct: 5   KERREQKKVCSEGGDE------SKEVEENRFFACYLLTSMCPRFKGHTYIGFTVNPRRRI 64

Query: 81  RQHNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKT 140
           RQHNGE+  GA RTK+KRPWEM+LCI+GFPTNV+ALQFEWAWQHP ES AVR+AAASFKT
Sbjct: 65  RQHNGEVRMGALRTKRKRPWEMILCIYGFPTNVSALQFEWAWQHPVESRAVRQAAASFKT 124

Query: 141 LGGLANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPC 200
           LGG+ANKIKLA  MLTL  WQS+NL V+FFSTKY  H+AGCPSLP HM++H C++DELPC
Sbjct: 125 LGGVANKIKLAYAMLTLPEWQSLNLTVNFFSTKYKMHSAGCPSLPEHMRVHICALDELPC 184

Query: 201 YEDIDQ-TYGCEDGDDLDSTNSEVMASC--SDDRIESLSDGSMEMNPSSIHVQNFTVQKS 260
           Y  ID+  Y   + ++ +    E+ AS   S+    +    S + N           +++
Sbjct: 185 YTGIDRDEYSTNEWENSEELTDEISASSTNSNSSFSNQDKDSTDENDDEHTDWKELDERA 244

Query: 261 ADNIL---EEDFIGIGGPLENESSLM 279
            +N     E  +I I  P+E  SS++
Sbjct: 245 GENSTCGREHSYIIIDSPVERSSSIL 264

[Close]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Match: V4M5R6_EUTSA (Structure-specific endonuclease subunit SLX1 homolog OS=Eutrema salsugineum GN=EUTSA_v10016841mg PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.300e-69
Identity = 143/276 (51.81%), Postives = 190/276 (68.84%), Query Frame = 1


		  
Query: 23  RRNQKKSEQPTEIVKKEKCEEGEKTRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHN 82
           +R ++ + +  + V ++     E   FF CY+LTSLSPR KGH+YIGFTVNP+RRIRQHN
Sbjct: 4   KRGRRGNPKTLDSVAEDGVTGKEGKGFFACYILTSLSPRHKGHTYIGFTVNPRRRIRQHN 63

Query: 83  GEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGL 142
           GEITSGA+RTKKKRPWEMVLCI+GFPTNV+ALQFEWAWQHPRES+AVREAAA+FK+  GL
Sbjct: 64  GEITSGAYRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHPRESLAVREAAAAFKSFSGL 123

Query: 143 ANKIKLALTMLTLHSWQSMNLRVSFFSTKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDI 202
            +KIKLA TMLTL +W S+NL V++FSTKY  H    PSLPPHMK+  C+MD+LPC+  +
Sbjct: 124 GSKIKLAYTMLTLPAWNSLNLTVNYFSTKYAHHGGLSPSLPPHMKVQVCAMDDLPCFTKL 183

Query: 203 DQTYGCEDGDDLDSTNSEVMASCSDDRIESLSDGSMEMNPSS--------IHVQNFTVQK 262
           D     ED + LDS   E      DDR   +  G++  + S+        +H ++F   K
Sbjct: 184 DNNSQPEDEESLDSHEEE-----EDDRRNEIQPGNLTTSSSNDLYLGEKELHDRDFEKAK 243

Query: 263 SADNILEE---DFIGIGG---PLENE-SSLMMGALE 284
             + +L++   +F G G     +E+E S + +G++E
Sbjct: 244 QPEAVLDDRLANFTGFGSLDESVEDEVSHITVGSIE 274

[Close]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.100e-28
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 1


		  
Query: 48  RFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHN-GEITSGAFRTKKKRPWEMVLCIHG 107
           RFFG YLL   +PR +G  Y+GFTVNP RR+RQHN G    GA+RT  + PW+MVL +HG
Sbjct: 9   RFFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHG 68

Query: 108 FPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVS 167
           FP+ VAAL+FEWAWQHP+ S  +       ++       +++   ML +  W  + L V 
Sbjct: 69  FPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVR 128

Query: 168 FFSTKYMKHAAGCPSLPPHMKLHF 191
           +    + +H   CP+ PPHM + F
Sbjct: 129 WLRPDF-RHEL-CPAPPPHMPIAF 150

[Close]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.000e-28
Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 1


		  
Query: 49  FFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNG-EITSGAFRTKKKRPWEMVLCIHGF 108
           FFG YLL  L+PR +G  Y+GFTVNP RR++QHNG     GA+RT  + PWEMVL +HGF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 109 PTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSF 168
           P+ VAAL+FEWAWQHP+ S  +       +     A  +++   ML    W  + L + +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 169 FSTKYMKHAAGCPSLPPHMKLHF 191
               + +    CP  PPHM L F
Sbjct: 126 LRADFRQDL--CPPPPPHMPLAF 146

[Close]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.500e-27
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 1


		  
Query: 48  RFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHN-GEITSGAFRTKKKRPWEMVLCIHG 107
           RFFG YLL   +PR +G  Y+GFTVNP RR+RQHN G    GA+RT  + PW+MVL IHG
Sbjct: 9   RFFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHG 68

Query: 108 FPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVS 167
           FP+ VAAL+FEWAWQHP+ S  +       ++    A  +++   ML +  W  + L + 
Sbjct: 69  FPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLR 128

Query: 168 FFSTKYMKHAAGCPSLPPHMKLHF 191
           +    + +H   CP+ P HM + F
Sbjct: 129 WLRPDF-RHEL-CPAPPAHMPIAF 150

[Close]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Match: SLX1_HUMAN (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=SLX1A PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.500e-26
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 1


		  
Query: 48  RFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNG-EITSGAFRTKKKRPWEMVLCIHG 107
           RFFG YLL  L+PR++G  Y+GFTVN  RR++QHNG     GA+RT  + PWEMVL +HG
Sbjct: 12  RFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHG 71

Query: 108 FPTNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVS 167
           FP++VAAL+FEWAWQHP  S  +       +     A  +++   ML    W  + L + 
Sbjct: 72  FPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLR 131

Query: 168 FFSTKYMKHAAGCPSLPPHMKLHF 191
           +      +    C   PPH+ L F
Sbjct: 132 WVRPDLRQDL--CLPPPPHVPLAF 153

[Close]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.400e-25
Identity = 61/142 (42.96%), Postives = 88/142 (61.97%), Query Frame = 1


		  
Query: 49  FFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEITSG-AFRTKKKRPWEMVLCIHGF 108
           F G YLL  ++P+FKGH+YIG+TVNP RRI+QHNG +  G A++T +K+PW M+L +HGF
Sbjct: 10  FHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHGF 69

Query: 109 PTNVAALQFEWAWQHPRESVAVREAAASFKTL-GGLANKIKLALTMLTLHSWQSMNLRVS 168
           P ++ ALQFEWAWQ P  S  ++ AA   K     +    ++   +L +  W  + L + 
Sbjct: 70  PNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLHIR 129

Query: 169 FFSTKY-MKHAAGCPSLPP-HM 187
           +   +Y M+    C  LPP HM
Sbjct: 130 WLMREYEMEFDPRC--LPPFHM 149

[Close]

BLAST of Spo17196.1 vs. TAIR (Arabidopsis)
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 243.0 bits (619), Expect = 3.700e-64
Identity = 124/215 (57.67%), Postives = 153/215 (71.16%), Query Frame = 1


		  
Query: 49  FFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQHNGEITSGAFRTKKKRPWEMVLCIHGFP 108
           FF CYLLTSLSPR KG +YIGFTVNP+RRIRQHNGEITSGA+RTKKKRPWEMVLCI+GFP
Sbjct: 27  FFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFP 86

Query: 109 TNVAALQFEWAWQHPRESVAVREAAASFKTLGGLANKIKLALTMLTLHSWQSMNLRVSFF 168
           TNV+ALQFEWAWQHPRESVAVREAAA+FK+  G+A+KIKL  TML L +W S+NL V++F
Sbjct: 87  TNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYF 146

Query: 169 STKYMKHAAGCPSLPPHMKLHFCSMDELPCYEDIDQTYGCEDGDDLDSTNSEVMASCSDD 228
           S+KY  H    PSLP HMK+  C+M++L  +  +D +   ED ++    N E      DD
Sbjct: 147 SSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPED-EESPEVNEEDDDDDDDD 206

Query: 229 RIESLSDGSMEMNPSSIHVQNFTVQKSADNILEED 264
                  G+   N SS   ++F   K    + +E+
Sbjct: 207 SSNLSQPGN--SNTSSSDDRHFEKAKEPVTVFDEE 238

[Close]

BLAST of Spo17196.1 vs. TAIR (Arabidopsis)
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal)

HSP 1 Score: 52.8 bits (125), Expect = 7.200e-7
Identity = 33/101 (32.67%), Postives = 48/101 (47.52%), Query Frame = 1


		  
Query: 24  RNQKKSEQPTEIVKKEKCEEGEK---TRFFGCYLLTSLSPRFKGHSYIGFTVNPKRRIRQ 83
           +N K S+    I      +E  K   ++ +  YL+ S +   K  +Y+G T +  RR++Q
Sbjct: 25  KNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILSTTEPIK--TYVGITTDFSRRLKQ 84

Query: 84  HNGEITSGAFRTKKKRPWEMVLCIHGFPTNVAALQFEWAWQ 122
           HNGEI  GA  +   RPW     I GF     A  FE  W+
Sbjct: 85  HNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKWK 123

The following BLAST results are available for this feature:

BLAST of Spo17196.1 vs. NCBI nr
BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
BLAST of Spo17196.1 vs. TAIR (Arabidopsis)

BLAST of Spo17196.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237432\|gb\|KNA24796.1\|	1.5e-285	100.	hypothetical protein SOVF_0124...	[more]
gi\|731349388\|ref\|XP_010685968.1\|	2.4e-169	63.9	PREDICTED: uncharacterized pro...	[more]
gi\|743897055\|ref\|XP_011041810.1\|	2.1e-72	49.3	PREDICTED: uncharacterized pro...	[more]
gi\|460402944\|ref\|XP_004246967.1\|	1.5e-70	71.3	PREDICTED: uncharacterized pro...	[more]
gi\|565391169\|ref\|XP_006361297.1\|	3.3e-70	55.2	PREDICTED: structure-specific ...	[more]

BLAST of Spo17196.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZ54_SPIOL	1.1e-285	100.	Structure-specific endonucleas...	[more]
A0A0J8BZJ5_BETVU	1.6e-169	63.9	Structure-specific endonucleas...	[more]
K4CSN5_SOLLC	1.0e-70	71.3	Structure-specific endonucleas...	[more]
M1BVG2_SOLTU	2.3e-70	55.2	Structure-specific endonucleas...	[more]
V4M5R6_EUTSA	3.3e-69	51.8	Structure-specific endonucleas...	[more]

BLAST of Spo17196.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SLX1_RAT	4.1e-28	43.7	Structure-specific endonucleas...	[more]
SLX1_BOVIN	9.0e-28	44.0	Structure-specific endonucleas...	[more]
SLX1_MOUSE	1.5e-27	43.7	Structure-specific endonucleas...	[more]
SLX1_HUMAN	6.5e-26	42.3	Structure-specific endonucleas...	[more]
SLX1_NEMVE	1.4e-25	42.9	Structure-specific endonucleas...	[more]

BLAST of Spo17196.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G30350.2	3.7e-64	57.6	Excinuclease ABC, C subunit, N...	[more]
AT5G43210.1	7.2e-7	32.6	Excinuclease ABC, C subunit, N...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG nuclease superfamily	PFAM	PF01541	GIY-YIG	coord: 50..123 score: 3.6
IPR000305	GIY-YIG nuclease superfamily	SMART	SM00465	uri_9	coord: 49..141 score: 4.
IPR000305	GIY-YIG nuclease superfamily	PROFILE	PS50164	GIY_YIG	coord: 48..130 score: 18
IPR027520	Structure-specific endonuclease subunit Slx1	HAMAP	MF_03100	Endonuc_su_Slx1	coord: 45..331 score: 23
None	No IPR available	PANTHER	PTHR20208	FAMILY NOT NAMED	coord: 5..231 score: 2.3
None	No IPR available	PANTHER	PTHR20208:SF10	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 5..231 score: 2.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0009987	cellular process
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006310	DNA recombination
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006680	glucosylceramide catabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006281	DNA repair
biological_process	GO:0008152	metabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0015693	magnesium ion transport
biological_process	GO:0006508	proteolysis
biological_process	GO:0051510	regulation of unidimensional cell growth
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0033557	Slx1-Slx4 complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
molecular_function	GO:0016881	acid-amino acid ligase activity
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0015095	magnesium ion transmembrane transporter activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004348	glucosylceramidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004185	serine-type carboxypeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17630	0.73	Barchart \| Table
Spo07209	0.73	Barchart \| Table
Spo19807	0.72	Barchart \| Table
Spo17701	0.72	Barchart \| Table
Spo12507	0.72	Barchart \| Table
Spo15700	0.71	Barchart \| Table
Spo09771	0.70	Barchart \| Table
Spo21823	0.70	Barchart \| Table
Spo08648	0.70	Barchart \| Table
Spo17784	0.69	Barchart \| Table
Spo18615	0.69	Barchart \| Table
Spo23771	0.69	Barchart \| Table
Spo01196	0.68	Barchart \| Table
Spo01823	0.68	Barchart \| Table
Spo05269	0.68	Barchart \| Table
Spo19793	0.68	Barchart \| Table
Spo02691	0.68	Barchart \| Table
Spo14240	0.67	Barchart \| Table
Spo02791	0.67	Barchart \| Table
Spo15089	0.67	Barchart \| Table
Spo15243	0.67	Barchart \| Table
Spo21422	0.67	Barchart \| Table
Spo10786	0.66	Barchart \| Table
Spo10379	0.66	Barchart \| Table
Spo07079	0.66	Barchart \| Table
Spo05255	0.66	Barchart \| Table
Spo20552	0.66	Barchart \| Table
Spo23856	0.66	Barchart \| Table
Spo10880	0.66	Barchart \| Table
Spo04258	0.66	Barchart \| Table
Spo02887	0.66	Barchart \| Table
Spo23936	0.65	Barchart \| Table
Spo22166	0.65	Barchart \| Table