Spo20012 (gene)

Overview
NameSpo20012
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGeneral transcription factor IIF subunit 1
LocationSpoScf_04009 : 2202 .. 5611 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAACACATGGGTATGGTTGGGAGTATTCGGGAGCTTATTATTGTTCATAGGAGGATTAATGAATGTGGTGAAGGTGTTTAAGATGCAACAAATGAACGGACTACGTTTAGAGAAACTACGAGGAGGTGCTCAAGAAGGGTTGGTTCGAGTAAGAGAAGGTCGTGTTCCTCTAATAACCGACGAAAGTCTTTCCACTCGTAGATTTCAAGGGGCCGAGCCAAAGAAACCTATCGCGGCTACCCCTTACAAAGATGTTCTTGTTAGTAACACTTGAAGAGTTGAAGGATTTATATAGGGGAGCTAGCAATGTACGTATATGACACTTTCCCTATTGATGAATTATTGATGATTCGAAATTGTATCAAATTAAGCCTATTTCGATTCACAAGTTTGTTATGATCATGTGGGTTGGTTCTTGTCCCATATATAGATCGAACTTGAAAATTCTTGATACTAGTGTGTGTCAATTTGTACTTTCTCTCCACAATTAATTCTACCTGACCTTCTATGGCAATTTTTATTATTATGCACGTACAATCAAGACTATTTTTATGCTTATCGAATGAGCTCTAGTAGATTTGGTTATCTATAGTCGGTCCGCTGGCCGGATCCGGAAAAGTACGGGTTTGGATAGCATAAAATATGCATTTTTAGACCAAAATTCGAGTTTTGCCTGAAAAAAAAGGTTGAAATTTATATCTTAATATTGGGAGGATGTTGAAATAACAAATTTGCAAGAGCATTAATTTGCAAGGGCATTACTTAATTGACCGCTTCACCGTCTTAATTTGGTAATACTCATGAAAATGGATATGGACATAAAAATCTAATTGGTGTTAAAGGATACATATATGAAAGTTTGTATGAAGCCTATGTGTATAACATCTTTAACATTTCATTTATGGTTGTTTGGTTCAAAATTTAGTTATTAGTTATTACAATCCAANATAAGGTCACACATATAAGCACTAATTGGAATGGGCCCAAAAGGCCCGATGGCAATCGGTCTATTAAGGGAAAGAATGTTGGGCTTTGGTTTTGTGTTAACCTAAAACTCTCACATTATAATAGATATAATGTCAGGGATTTAGAAATTACGTAATTGAATATCTGACAAAAGGAAAAAAAAAAGCCCTAATTCTTATTCTCTGAAACGTCGTTCTTCCCAAACAAAGCAAGAGATTGATCGTGATGGTTCTCTTCCGTACTAGCATACGTGGGATTCAATTGGTGCTTGTGGACTAAGTAGAGGAGCAACAAGTGGGGCTCTAAGATCTTCGGAGCTTGCATACGAACGGGAGAACACGCTACAAAGGTGATTATTCTTTCGACTTAATCTGATCTATACTATTGTTATGCATGAGATCCTGTGATAGATGTTAGGAAATTATTTCCTGAAATTCCGCTTTATGCATCTATATGTTCCTACAGAAATTTATATCTTAATATTGGGAGGATGTTGAAATAACAAATTTGCAAGAGCATTAATTTGCAAGGGCATTACTTAATTGACCGCTTCACCGGCTTAATTTGGTAATACTCATGAAAATGGATATGGACATAAAAATCTAAGAGGAAGTATTTTCGGATATCAGATATTTGTGGACAAATGCATATCATAACAAAAGACAAAATAAGAAAAATGACAAAAAAGAAATTAAATGGTACTTTTTTAAACAAAAATGGTACTTTTTTTAACTGAATGGTACTTTTTTTTTACAGAATGGTACTTTTTTAACATAAATGGTACTTCCTTTTTTGTCTTTTAGCTATTTGTCTTTTAGCTGATATGTGTGTTGCCACACATATCTGATATCCGAAAAAACAACCTCAAAATCTAATTGGTGTTAAAGGATACATATATGAAAGTTTGTATGAAGCCTATGTGTATAACATCTTTAACATTTCATTTATGGTTGTTTGGTTCAAAATTTAGTTATTAGTTATTACAATCCAATAATGGACAAGTATGTTATGCTAAATAAAAATCAATTGTTTTGATATTTTTATGATGCAAAAATGTGAGAGTTTGTCATGTTAAGGGAAAAACATTTAACATTTATGACTGTATATGAACGGAGGAGGATTGTTGACAATACATATAAGGTGCAACCGGGTGCACGATGTACCCTTTTAAATTTTTCCTTTACGCGCAAGGAGAAAATGTGACAGAGATCGAACACAAAATATATCGGTAACTTTTGTGTAACACCGCGTTACCAGAATTACCACTTTGATTGCTTAACTAATTGGTTTCATTGCTTAACTAATTAGTTCTAGCGCTTACTAATTAGTTTCTTTGTTTAACTAATTGGTTTCAATGCAAACTAATTAGTTCCATTCACTACAAGAAATTGTATCATTAACGAGAGGAAATCTCGTCGCTAAAGGCCAGTAATCGTTGATTAATGACGGGATTTCCTGTGGCGAACCCGTCATAAAAGGGGGCCGTCGTTAATGAAAAATCCCGTCGTTAACCCGTCATAAAAGACATTTGTGACAATTATTTCCGTCTTTGTTTGGTTGTTAGCCCCGTAGTAAAAGGCTTTTGCGACGGAATTTTTGACCCGTCGTTAATAGGTTGTCATTAAAGATACAAATTCTTGTAGTGATTGCTTAACTAATTGATTTCATTGATTAACTTAAATGACACAAGGTGGTCTTTTGTGTAAGACTGCCTTATATAAAAGTTTGTGATGTACGTGGACGCATCTAATAATTTTCAGATGATTAAATTATGTTATTAGAGTGTGATAATTAATGATCGAGCAGCATAAGTTTAAAACAGGTTATATAAACAAAAGAAACCGAGTATGAAAAATTAAATTAAGGTTGGAAGCATTGCATTTGTTTGCATCTACGCTTAATATTTCATAAATGAATTTCTTCATTTAATCTTCCTTAGTGCATGTCATAAAACGTGAAGTTTCACTTTTGTTCTATGGTTTTTTGACTTAAAATTCAATGCATAAGACAAAGTTTTATTATCTTATGTTGAGAAACGTAATTGTATTTACGTTGTATTTATTGAAATTGATGAAAGAAACGCCTCTAAGGAAAAACATCGCTTGAAGTGTGCTGCCTTTTCCAATAAATAGAGATGGTAACTCACTTGTAAATATAAGAAAAACAAATTATACTCTTCTTGTTTTCTCACTAATTAGGGCTTGTTTGGATTAGGCAAATTAATTAAGGGGGGTAAACATAAGGGAGTAGATAATACATGGGAAATTTTTATGGGGTTAATTGTTTCCTTTCAATGACAACATTGCCGCTCCCCAGGCGTGGGAATCGACCACGTCCAATTTTTCGATAAATTGGATGTAGGATGTCCAACAATGCTGTCCAGATCCATCTGGAATGATTAAGCAGCTCACGATAATGAGGAGGATGGCCTTGATCCTCTGA

mRNA sequence

GGGAACACATGGGTATGGTTGGGAGTATTCGGGAGCTTATTATTGTTCATAGGAGGATTAATGAATGTGGTGAAGGTGTTTAAGATGCAACAAATGAACGGACTACGTTTAGAGAAACTACGAGGAGGTGCTCAAGAAGGGTTGGTTCGAGTAAGAGAAGGTCGTGTTCCTCTAATAACCGACGAAAGTCTTTCCACTCGTAGATTTCAAGGGGCCGAGCCAAAGAAACCTATCGCGGCTACCCCTTACAAAGATGTTCTTGATGTCCAACAATGCTGTCCAGATCCATCTGGAATGATTAAGCAGCTCACGATAATGAGGAGGATGGCCTTGATCCTCTGA

Coding sequence (CDS)

GGGAACACATGGGTATGGTTGGGAGTATTCGGGAGCTTATTATTGTTCATAGGAGGATTAATGAATGTGGTGAAGGTGTTTAAGATGCAACAAATGAACGGACTACGTTTAGAGAAACTACGAGGAGGTGCTCAAGAAGGGTTGGTTCGAGTAAGAGAAGGTCGTGTTCCTCTAATAACCGACGAAAGTCTTTCCACTCGTAGATTTCAAGGGGCCGAGCCAAAGAAACCTATCGCGGCTACCCCTTACAAAGATGTTCTTGATGTCCAACAATGCTGTCCAGATCCATCTGGAATGATTAAGCAGCTCACGATAATGAGGAGGATGGCCTTGATCCTCTGA

Protein sequence

GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLITDESLSTRRFQGAEPKKPIAATPYKDVLDVQQCCPDPSGMIKQLTIMRRMALIL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20012.1Spo20012.1mRNA


Homology
BLAST of Spo20012.1 vs. NCBI nr
Match: gi|870865009|gb|KMT16076.1| (hypothetical protein BVRB_3g052440 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.0 bits (341), Expect = 4.200e-29
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G TWVW GVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQE L+RVREG+VPLI 
Sbjct: 192 GKTWVWSGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQERLIRVREGQVPLIP 251

Query: 61  DESLSTRRFQGAEPKK-PIAATPYKDVL 88
           +E+  TRR Q A+PK     ATPYKDVL
Sbjct: 252 EENQPTRRLQSADPKNLSTPATPYKDVL 279

BLAST of Spo20012.1 vs. NCBI nr
Match: gi|731321732|ref|XP_010671510.1| (PREDICTED: uncharacterized protein LOC104888288 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.0 bits (341), Expect = 4.200e-29
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G TWVW GVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQE L+RVREG+VPLI 
Sbjct: 203 GKTWVWSGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQERLIRVREGQVPLIP 262

Query: 61  DESLSTRRFQGAEPKK-PIAATPYKDVL 88
           +E+  TRR Q A+PK     ATPYKDVL
Sbjct: 263 EENQPTRRLQSADPKNLSTPATPYKDVL 290

BLAST of Spo20012.1 vs. NCBI nr
Match: gi|147804914|emb|CAN66869.1| (hypothetical protein VITISV_013673 [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 1.900e-21
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+FGSLL FIGGLMNVVKVFKMQQM+GLRLEKLRGGAQE L+  REG++PLI 
Sbjct: 204 GMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLRLEKLRGGAQERLIHEREGQIPLIL 263

Query: 61  DESLSTRRFQGAEPKKPIAATPYKDVL 88
           ++    R+    E    +  TPY+DVL
Sbjct: 264 EDQ-RRRKIHVEEXMPVVVPTPYRDVL 289

BLAST of Spo20012.1 vs. NCBI nr
Match: gi|225462749|ref|XP_002268340.1| (PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 1.900e-21
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+FGSLL FIGGLMNVVKVFKMQQM+GLRLEKLRGGAQE L+  REG++PLI 
Sbjct: 204 GMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLRLEKLRGGAQERLIHEREGQIPLIL 263

Query: 61  DESLSTRRFQGAEPKKPIAATPYKDVL 88
           ++    R+    E    +  TPY+DVL
Sbjct: 264 EDQ-RRRKIHVEETMPVVVPTPYRDVL 289

BLAST of Spo20012.1 vs. NCBI nr
Match: gi|302143673|emb|CBI22534.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 110.5 bits (275), Expect = 1.900e-21
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+FGSLL FIGGLMNVVKVFKMQQM+GLRLEKLRGGAQE L+  REG++PLI 
Sbjct: 204 GMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLRLEKLRGGAQERLIHEREGQIPLIL 263

Query: 61  DESLSTRRFQGAEPKKPIAATPYKDVL 88
           ++    R+    E    +  TPY+DVL
Sbjct: 264 EDQ-RRRKIHVEETMPVVVPTPYRDVL 289

BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FJL8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g052440 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.900e-29
Identity = 70/88 (79.55%), Postives = 75/88 (85.23%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G TWVW GVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQE L+RVREG+VPLI 
Sbjct: 192 GKTWVWSGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQERLIRVREGQVPLIP 251

Query: 61  DESLSTRRFQGAEPKK-PIAATPYKDVL 88
           +E+  TRR Q A+PK     ATPYKDVL
Sbjct: 252 EENQPTRRLQSADPKNLSTPATPYKDVL 279

BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Match: A5ALP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.300e-21
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+FGSLL FIGGLMNVVKVFKMQQM+GLRLEKLRGGAQE L+  REG++PLI 
Sbjct: 204 GMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLRLEKLRGGAQERLIHEREGQIPLIL 263

Query: 61  DESLSTRRFQGAEPKKPIAATPYKDVL 88
           ++    R+    E    +  TPY+DVL
Sbjct: 264 EDQ-RRRKIHVEEXMPVVVPTPYRDVL 289

BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Match: F6H6F5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02650 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.300e-21
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+FGSLL FIGGLMNVVKVFKMQQM+GLRLEKLRGGAQE L+  REG++PLI 
Sbjct: 204 GMAWVWLGMFGSLLFFIGGLMNVVKVFKMQQMDGLRLEKLRGGAQERLIHEREGQIPLIL 263

Query: 61  DESLSTRRFQGAEPKKPIAATPYKDVL 88
           ++    R+    E    +  TPY+DVL
Sbjct: 264 EDQ-RRRKIHVEETMPVVVPTPYRDVL 289

BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MKQ4_GOSAR (tRNA dimethylallyltransferase OS=Gossypium arboreum GN=F383_22595 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.900e-21
Identity = 58/89 (65.17%), Postives = 68/89 (76.40%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  WVWLG+ GS++  IGGL NVVKVFKMQQMNG+RLEKLRGGAQ GL+  REG+VPLI+
Sbjct: 204 GKRWVWLGICGSVMFMIGGLTNVVKVFKMQQMNGIRLEKLRGGAQNGLIEGREGQVPLIS 263

Query: 61  DESLSTRRFQGAEPKKPIAA--TPYKDVL 88
           D+ L  R+ +  E K   AA  TPYKDVL
Sbjct: 264 DDDL-RRKMEVDEVKAATAATPTPYKDVL 291

BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Match: A0A0L9UFU1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g161700 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.800e-21
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G+TW+WLG+FGSL+L IGGL N++KVFKMQQMNG+RLEKLRGGA E LV  REG VPLI 
Sbjct: 204 GSTWIWLGIFGSLMLLIGGLTNLIKVFKMQQMNGIRLEKLRGGAHERLVSSREGHVPLII 263

Query: 61  DESLSTRRFQGAEPKKPI-----AATPYKDVL 88
           +    +   Q  +   PI     A+TPYKDVL
Sbjct: 264 ERQSLSHEPQETKVTLPIPTPAPASTPYKDVL 295

BLAST of Spo20012.1 vs. TAIR (Arabidopsis)
Match: AT5G24130.1 (unknown protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.000e-17
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1

		  

Query: 1   GNTWVWLGVFGSLLLFIGGLMNVVKVFKMQQMNGLRLEKLRGGAQEGLVRVREGRVPLIT 60
           G  W+WLG+ G++ LF+GGL+NVVKVF   Q++GLRLEKLRGGAQ+ L+  REG +PL+ 
Sbjct: 205 GERWIWLGISGAICLFVGGLLNVVKVFNFVQISGLRLEKLRGGAQDRLLEGREGYLPLVA 264

Query: 61  DES--------------------LSTRRFQGAEPKKPIAA-TPYKDVL 88
           +E                      +++  +GA     +++ TPYKDVL
Sbjct: 265 EEERIRKMEADHEASSRAKPRAHTTSKAGEGATETVVVSSPTPYKDVL 312

The following BLAST results are available for this feature:
BLAST of Spo20012.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870865009|gb|KMT16076.1|4.2e-2979.5hypothetical protein BVRB_3g05... [more]
gi|731321732|ref|XP_010671510.1|4.2e-2979.5PREDICTED: uncharacterized pro... [more]
gi|147804914|emb|CAN66869.1|1.9e-2164.3hypothetical protein VITISV_01... [more]
gi|225462749|ref|XP_002268340.1|1.9e-2164.3PREDICTED: uncharacterized pro... [more]
gi|302143673|emb|CBI22534.3|1.9e-2164.3unnamed protein product [Vitis... [more]
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BLAST of Spo20012.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8FJL8_BETVU2.9e-2979.5Uncharacterized protein OS=Bet... [more]
A5ALP2_VITVI1.3e-2164.3Putative uncharacterized prote... [more]
F6H6F5_VITVI1.3e-2164.3Putative uncharacterized prote... [more]
A0A0B0MKQ4_GOSAR2.9e-2165.1tRNA dimethylallyltransferase ... [more]
A0A0L9UFU1_PHAAN3.8e-2160.8Uncharacterized protein OS=Pha... [more]
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BLAST of Spo20012.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20012.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G24130.13.0e-1742.5unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34967FAMILY NOT NAMEDcoord: 1..91
score: 1.1
NoneNo IPR availablePANTHERPTHR34967:SF1SUBFAMILY NOT NAMEDcoord: 1..91
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0032501 multicellular organismal process
biological_process GO:0043484 regulation of RNA splicing
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006952 defense response
biological_process GO:0009607 response to biotic stimulus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0017177 glucosidase II complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004575 sucrose alpha-glucosidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo085080.98Barchart | Table
Spo219740.83Barchart | Table
Spo025110.78Barchart | Table