Spo12421 (gene) | SpinachBase

Overview


Name	Spo12421
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_04665 : 1 .. 2110 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTATCAATTCTTCATAAAACGTTCAGATCTTCGCGATTTTTTGATCAATTTAATGCGATTTTAAGCAATTTAATTTGATTGTTGATGAGATTCTGGGCTATTTAAGCTGTTTGAGTTGATTGCTGATGAGATTTTGTGCGAATTTTTCTGTTATAATATGATTTTGTTGATTTTGGTACAACTTAGGGCTTTTTGTGCTATTTAAGATGTTTGAGTTGGTTGCTGATGTGATTTTGTGCGAATTTTTGTGTTATAATATGATTTTGTTGATTTTGGTCCAATTTGGGGTTTTTTGTGTAATCGATATGATTGATGTAAATATTACTATTTAGTTTTCCAATTATATTGCTGAGATTTTGACGTGTTCATGCTATTATTTGTTGAGTTTCAGAATGTTTTGTGAATATTTCTCATGGCTTGATTTTAAGCTTTGAATTTATGGACAATTTTCTCGACTTTTGATATTAGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGGTTTGTGTTAGACCAACACTTTGTTAGTCACATTCTCCTAATTACTATTTTTTTGCCAAGAGGTTTATTTTCATTCTTTCTTTTATTCTTCTGGCGCTATTTAGAATTTGAAATCATGGTTTATCATCTTGAATTCTTGACATTGATTACACTAAACCTAGAACATCTTGACATTTGTGTATTTTCAGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGGTATAAAATTCTCCATAAGCATATCTTTTTTTTTTGTTAAATTTTGATTTAGGGTAATGAAAAATGAATTGGAGTTGGATTTTACTATTCATATAATATTCAAATTCAGAACCTTGCTCAGATATGCCTTCCTATTGGAATGGATGTTAGTAGAATATTGTATTGATTAGGTAATGAGTAGAACACACATTTTTTTGGTATATGAACTTTGCTCTGATATGACTGCCTATTTTTCTTTTGCCTCGTTGTTTTTAAAAATGTATGTTTTAACTTAATCATTTGATTCTATTTATTTAGTGAGAGAATAGGGGTGCATTTAGTTTCTGTTATGTTTTATACAAGAAGTTGTTATATGCTTTAGCCTTTTAGGTATTTGTTCCCAAGTTTCTATTTGTCTTATGCTTGCGGTCCAAGAAACTATCACGGGTTCTGCTTTCAATTTGGGAAATTATTGTTACAATTTTTTGCGCTTAGATACATGAATTTGTGTTTTTGATGGTAATGTATCGAAAATGACTTTTAAATAAAGTGCTACTTGCTGCTATATATGATATATAGGCTTTTAGCATGGTTGACAACTTGACGTGGATATCAATGGAGTATTAATTGGTGTCCTAGAGTGTAGCATTGAATATCTCTTCGTTGAAGTACGCTTTGTTATTTCTCTTAGAGATTGATGTTGTAATTTTGTCTAAAAGTCTTATCATATCTTGGTTGCCTCAGCTATTTTGTTTTACCTTTGCTATCCTGATTTCATTCTTTGTTGTATTCTTGTATGGTCATAGGTATTGTGGCATCTGACGCCGTAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

mRNA sequence

CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Coding sequence (CDS)

ATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Protein sequence

MRHLTSVWQPLELQAFKDWLLLKRDDVDRHLLCIIQEKGRHPHNNDLSAPSPPSRNMYGTGQGSSRCLYGCYLSTIKVEQEDKATRSFEKDL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12421.1	Spo12421.1	mRNA

Homology

[Close]

BLAST of Spo12421.1 vs. NCBI nr
Match: gi|902229171|gb|KNA21403.1| (hypothetical protein SOVF_043130 [Spinacia oleracea])

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1

		  
Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493

[Close]

BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPK0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_043130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1

		  
Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493

The following BLAST results are available for this feature:

BLAST of Spo12421.1 vs. NCBI nr
BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
BLAST of Spo12421.1 vs. ExPASy Swiss-Prot
BLAST of Spo12421.1 vs. TAIR (Arabidopsis)

BLAST of Spo12421.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902229171\|gb\|KNA21403.1\|	2.6e-13	60.2	hypothetical protein SOVF_0431...	[more]

BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RPK0_SPIOL	1.8e-13	60.2	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo12421.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12421.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006370	7-methylguanosine mRNA capping
biological_process	GO:0006189	'de novo' IMP biosynthetic process
biological_process	GO:0006572	tyrosine catabolic process
biological_process	GO:0042207	styrene catabolic process
biological_process	GO:1902000	homogentisate catabolic process
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0008219	cell death
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006266	DNA ligation
biological_process	GO:0009113	purine nucleobase biosynthetic process
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0098507	polynucleotide 5' dephosphorylation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004620	phospholipase activity
molecular_function	GO:0008374	O-acyltransferase activity
molecular_function	GO:0004651	polynucleotide 5'-phosphatase activity
molecular_function	GO:0004725	protein tyrosine phosphatase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004637	phosphoribosylamine-glycine ligase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003910	DNA ligase (ATP) activity
molecular_function	GO:0004484	mRNA guanylyltransferase activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0004334	fumarylacetoacetase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02818	0.71	Barchart \| Table
Spo04985	0.70	Barchart \| Table
Spo17225	0.69	Barchart \| Table
Spo12423	0.69	Barchart \| Table
Spo06477	0.68	Barchart \| Table
Spo03442	0.68	Barchart \| Table
Spo27362	0.67	Barchart \| Table
Spo06041	0.67	Barchart \| Table
Spo08863	0.67	Barchart \| Table
Spo09214	0.67	Barchart \| Table
Spo14099	0.67	Barchart \| Table
Spo15404	0.67	Barchart \| Table
Spo16919	0.67	Barchart \| Table
Spo18116	0.67	Barchart \| Table
Spo26806	0.67	Barchart \| Table
Spo25594	0.66	Barchart \| Table
Spo15874	0.66	Barchart \| Table
Spo26491	0.66	Barchart \| Table
Spo23856	0.66	Barchart \| Table
Spo24456	0.66	Barchart \| Table
Spo11680	0.66	Barchart \| Table
Spo14240	0.66	Barchart \| Table
Spo15089	0.66	Barchart \| Table
Spo17220	0.66	Barchart \| Table
Spo02749	0.66	Barchart \| Table
Spo17856	0.66	Barchart \| Table
Spo18451	0.66	Barchart \| Table
Spo22107	0.66	Barchart \| Table
Spo23611	0.66	Barchart \| Table
Spo17211	0.65	Barchart \| Table
Spo03662	0.65	Barchart \| Table
Spo19554	0.65	Barchart \| Table
Spo25013	0.65	Barchart \| Table
Spo01841	0.65	Barchart \| Table