Spo14990 (gene)

Overview
NameSpo14990
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L37a
LocationSpoScf_05133 : 154 .. 4114 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGCACGCCCTGCAGCCAAGCACGCATGCCCACAACCACTGCTGCCCATGCGCGCTTCGTCGCTGCATGTTGCTGCGCATCGCAAGGCTAGGTGCCTTGCTTGCTCGCAACCCTCGCAAGCAAGGCCCTTCCTGCTTGCTTGCCCCTTCCCTCGCCCAGCGCGCGCGGGGCACGCAGCCCATGCTGCTGCCCGTGTCGCTGCGGCTCGGCACTGGTGGGGTAGCCCGCGTGGCTCGACGAGCCACACGTCCACCCCACCCTTGTGTTCATGCCTTCGGTTCGTACTACGGACCAACTCAATTAAAAAAAAAAATTCACGAACGTTTGCATTTATGTTATTTTTCATAAAAAGTTACGATTTTTATTTTGAAAAACAACGGTTTTTACGATTTTAATTTTAACGACAATCCAATTTCGTAAAATATTAAATCAAGACTAACATTATTCAAATTTTGAGAAAGAACGATTTCAACCAAAAATTTGAACTTTCAAATAATAAAATCTAAAACTTTAAATCGTTCTTTAAACATTTAAATTTCAGATCTTAATAATTAGGTTTAAGTGCGATTAAAATTAACGAAACCATTCAAAATTTTAATCCAATAATTTTTAAAATTAGCCACTGACCCATGAAATTATATACCCTTTCCCAATTAACCGAATTATTAGATCTAAATTATTTAAAAATCAATTAGGGATCTAAAATTTACGAATTTGGGGAAAGCTAAGGTATGGTTTATACTTATCGGAAAAATGTTAAACTTTTACCATAGATCAAGAATCTACCTAGCCACATCGTGTCAAAATTTCAATCAATTCCGAGTTGTTTAGGTCGACCTTTTAATTGAGATACTTTCCGACACTTTTAATGTTAATTCGAAAATTAATAAAAACGCCCAAAAAACACCACTTCGAGGCCTGTTTTTGCAATTCCGTTCTCATGAGTTGATCTTAGAAAATCGTTTTCAGTCAGATTAGGGTCAGAAAAGTTGAAAAATCGAATCTTTTTGATTTCAGAACAAGTTACGCAATTAATCCAATAATCCATAAAATTTCCGAAAAATCAACAAAAATTTCCAAAATTTCGACAACAGCAAAACCACAAAAAATTCATGCTAAAACATGCTTTGAATACATAAGGCTCGTGATACCACTATAGGGGAATACAGTTAAACATAATAACATGTGCGGAAACAATCCCCAAAGCCAGGAAACATGTATAAAGCACAGATTAAGCAAACTTACATTTGAAGCGTGTTTTCCCGAGTAATCTATCAACAAACACGAACTTAGAACTCCACTTGTCGTTCCTTTACTTGGTTCACCGACATGTTCAGATCCGTCTTGATAATCGTAGCTTAGACAATCACTCAAGAGTTTGTGCTTTTGGGAAGATCACATCCATGGAGGCTAAGAGAGAATTAGGGTTTCTCTCTCCTCCGTAGGGTTTGATGTGTGTGTCTGATTTTTGCATTAGGATTAGGAAAACATAATAGACTAGGTTATATAAATAACCTATTAAGTGAGCCAAGCCAACCGGCCAAGCATAGAGCCCGACCGGCCAGCAAGGCCCACGACCAAACCTCTGCACAAGCGCGCAACACACAACACTCGGTGGGCTGGGCCATGTTGCTGCTGTTGTTGTTGCTTCTCCGTGCGTGCACAGCCAAGGCAGCAAGGCCATGGGCCTTTGCTCCTTGCGCTTTGCTCGTGGGCTTGCATTCGTGTTTGCTTTAATTAATTATCATTGGATAATTCATTTAGCGTTTCGTACTTGACGATCCATTGTCGTACGATACGATTATTCGTTTCGCTTAGCTTACGAATATATGCAATCACGATATACGATTTTACGATCAAATGTTAAATCGTATGATTATGTTTTCCAAACTAATTTCCCGAAAAGCTATTAAATGAATTTCCGATTCATTTAATCCGGTGATCTGTTACGTGCCATTGGTGTGACCTTGAAGGTTCAGTCAAGAGTAAGTTGTGAGCTTAATATTCATTAGAACTCACTGATCGGAAGCATTGCTCCAGCTAGCTGTTCCGATCACTTGATCTCACTGAATTAATTGTTCGCAATTAATCTGAACCTTGGTATTAGACTAAATGCACCTAGGGTGAAGGACATATTTCCTTCAGAAACGTGTACGTATGAAATTGAAATGAAAAAGAGGAGAGGTTTCGCACGGAGTGAATGGTATAATGTGACTTGTTGCAACATGTGTATATGGGAAGTTGAGAGGTGACAAATTGAGATTGTCAAGTATGACATGAAGCATAACCATGAACTCACTCCTTGTAATAGTAAGTTATGGTTAACAATAGATCTCTATTATATAAGCCAACTCCCGAGGGCTTTTTTGTAACTTAACTTTTCGTGTCCCCATTTAAAATGTCTAATATACCCTTCACACTTCAGTACCTACCCAAACCCTTCGCACTCCCTCCCGTAGTCCCGTTCGTTTTCTTCTCTCTCCTCCATCAGATCTTCTCCTTCGATCTTCGCCGTCTTCGCTTCTCAAACCTCGCCACTTTTTCTCTCAAACTTTCTCTCTCCTACTGCTTCTCAGCCGTCTGCTATCACCGTCGTCTCCACCATCACTCTGATCGGCCTTCCATCGACGTCCACTTCTCTGCAACCTAATCCCGTTTTCCCTAATTATCTCCGTCGAATGGTGTATGAGGATATCNAACTGAATAGTGAACTAATTATGCTGCTAGCCGGAATTTTATTAAAAATGGGAGCATACTCAATTTAAATTGAGTAAACAGAATTCCATACTCGATCTCATAGTGAACTAATTGTACTTTCAGTTGGGTAATTAGCACTGGAAAAGGTAAGTAGTATTGAACTAATTGTATACATAAGAACAATATTGGAGTATTAAGATGGTTAAAAAAGGCGCCATATAAAAAAGCTGGCATTCTTTCAGGAGTAGAAATAAAATGAGCTTAAGATGAGATTGATGATATAAAACCAAAACAAAAAAAAGCAAAGTCTATCCACATTAAAGTTTAAAATGAGCTTAAGATGAGATTGATGATATAAAACCAAAACAAAAAAAAAGCAAAGTCTATCCACATTAAAGTTTAAACAAGAAGTAGAGAACCAATGAGTTGTCCAGTAATATTACGGAGTTGTAATTTTTGCTTTGTTGTTTTTGTTATTGATGTCATTTGTTTGTTGTATATTTTTGGGTGAGCTGAGTTTAGTTAATAATGCTCATTAAAGTTCTGTAGTTTTTTTTTTATCGCTACTTTTGACTTTGTATGTTATTGATGCATACATGCCAAGAGAACCAAGAAGGTCAATATTGTTGGGAAATACGGTGAGTTCTGTTGCGAAAATGTCAAAGGATGTCACATAGCATAAATCAATGCCATTTGTTTTGAAATCATGTATGTGACAATAGTGAGAAAAACAAGATATCATCCGGTATCTTTATATAATAGAGATTTGATACATTTTTGTCTAGAATAGCTTCATACTAAAGTGGTGTAAGATAATGAGAAGTTAATTTGAGACTTTTCTGTTTAAATGTTTCTGTTTGATTATTATTGGGAGCGAGTTATCTTCTCTAGGGTCTTAATTTGGTTGTTTGTCTCGCTGAGTGGATGAAATGTATTATCACAATTAATGAATATCATTATATTGTTTAGGTACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAGGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGGTAAAGTTCCATTCTCAATCAATAAGATATCTATGGTCTGTGAATCGACTTAACTTTTGATGTCTGACTGCAAAAACACTATGATGCATTGCAGTACGCCGTGAAGAGAAAGGTTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGTTGGTGGTGCTTACACTTTGAAGTATATAGGCAGAAATTTATGCTAA

mRNA sequence

ATGCCCGCACGCCCTGCAGCCAAGCACGCATGCCCACAACCACTGCTGCCCATGCGCGCTTCGTCGCTGCATGTTGCTGCGCATCGCAAGGCTAGGTGCCTTGCTTGCTCGCAACCCTCGCAAGCAAGGCCCTTCCTGCTTGCTTGCCCCTTCCCTCGCCCAGCGCGCGCGGGGCACGCAGCCCATGCTGCTGCCCGTGTCGCTGCGGCTCGGCACTGGTGGGGTAGCCCGCGTGGCTCGACGAGCCACACGTCCACCCCACCCTTGTGTTCATGCCTTCGATCTTCTCCTTCGATCTTCGCCGTCTTCGCTTCTCAAACCTCGCCACTTTTTCTCTCAAACTTTCTCTCTCCTACTGCTTCTCAGCCGTCTGCTATCACCGTCGTCTCCACCATCACTCTGATCGGCCTTCCATCGACGTCCACTTCTCTGCAACCTAATCCCGTTTTCCCTAATTATCTCCGTACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAGGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGAAAGGTTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGTTGGTGGTGCTTACACTTTGAAGTATATAGGCAGAAATTTATGCTAA

Coding sequence (CDS)

ATGCCCGCACGCCCTGCAGCCAAGCACGCATGCCCACAACCACTGCTGCCCATGCGCGCTTCGTCGCTGCATGTTGCTGCGCATCGCAAGGCTAGGTGCCTTGCTTGCTCGCAACCCTCGCAAGCAAGGCCCTTCCTGCTTGCTTGCCCCTTCCCTCGCCCAGCGCGCGCGGGGCACGCAGCCCATGCTGCTGCCCGTGTCGCTGCGGCTCGGCACTGGTGGGGTAGCCCGCGTGGCTCGACGAGCCACACGTCCACCCCACCCTTGTGTTCATGCCTTCGATCTTCTCCTTCGATCTTCGCCGTCTTCGCTTCTCAAACCTCGCCACTTTTTCTCTCAAACTTTCTCTCTCCTACTGCTTCTCAGCCGTCTGCTATCACCGTCGTCTCCACCATCACTCTGATCGGCCTTCCATCGACGTCCACTTCTCTGCAACCTAATCCCGTTTTCCCTAATTATCTCCGTACCCGGTCTGGTGCCACTCTGTGTAAGAAGATTAGGAAGATGGAGGTCAGTCAACACAACAAGTACTTTTGTGAGTTCTGCGGAAAGTACGCCGTGAAGAGAAAGGTTGTTGGTATTTGGGGATGCAAGGACTGTGGGAAGGTCAAGGTTGGTGGTGCTTACACTTTGAAGTATATAGGCAGAAATTTATGCTAA

Protein sequence

MPARPAAKHACPQPLLPMRASSLHVAAHRKARCLACSQPSQARPFLLACPFPRPARAGHAAHAAARVAAARHWWGSPRGSTSHTSTPPLCSCLRSSPSIFAVFASQTSPLFLSNFLSPTASQPSAITVVSTITLIGLPSTSTSLQPNPVFPNYLRTRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTLKYIGRNLC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14990.1Spo14990.1mRNA


Homology
[Close]
BLAST of Spo14990.1 vs. NCBI nr
Match: gi|955330835|ref|XP_014633432.1| (PREDICTED: 60S ribosomal protein L37a isoform X2 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 1.300e-21
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTLKYIG 215
           TR GA+L K+I+KMEVSQH+K+FCEFCGKYAVKRK VGIWGCKDCGKVK GGAYTLKY  
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLKYTS 75

Query: 216 R 217
           +
Sbjct: 76  K 76
[Close]
BLAST of Spo14990.1 vs. NCBI nr
Match: gi|475626856|gb|EMT33497.1| (60S ribosomal protein L37a [Aegilops tauschii])

HSP 1 Score: 110.9 bits (276), Expect = 2.800e-21
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTLKY 214
           TR GA+L K+I+KMEVSQH+KYFCEFCGK+AVKRK VGIWGCKDCGKVK GGAYT+KY
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMKY 73
[Close]
BLAST of Spo14990.1 vs. NCBI nr
Match: gi|703152903|ref|XP_010110542.1| (hypothetical protein L484_023376 [Morus notabilis])

HSP 1 Score: 109.8 bits (273), Expect = 6.200e-21
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRKVVGIWGCKDCGKVK GGAYTL
Sbjct: 568 TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKVVGIWGCKDCGKVKAGGAYTL 623
[Close]
BLAST of Spo14990.1 vs. NCBI nr
Match: gi|720059303|ref|XP_010274533.1| (PREDICTED: 60S ribosomal protein L37a-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 109.8 bits (273), Expect = 6.200e-21
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRKVVGIWGCKDCGKVK GGAYTL
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKVVGIWGCKDCGKVKAGGAYTL 71
[Close]
BLAST of Spo14990.1 vs. NCBI nr
Match: gi|15228411|ref|NP_187706.1| (putative 60S ribosomal protein L37a-1 [Arabidopsis thaliana])

HSP 1 Score: 109.8 bits (273), Expect = 6.200e-21
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQHNKYFCEFCGKY+VKRKVVGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Match: N1R5C5_AEGTA (60S ribosomal protein L37a OS=Aegilops tauschii GN=F775_26817 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.000e-21
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTLKY 214
           TR GA+L K+I+KMEVSQH+KYFCEFCGK+AVKRK VGIWGCKDCGKVK GGAYT+KY
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMKY 73
[Close]
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Match: W9SDH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023376 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.300e-21
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRKVVGIWGCKDCGKVK GGAYTL
Sbjct: 568 TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKVVGIWGCKDCGKVKAGGAYTL 623
[Close]
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR65_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_150270 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.700e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVK 205
           TRSGATLCKKI+KMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVK
Sbjct: 1   TRSGATLCKKIKKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVK 49
[Close]
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Match: A0A087H8N0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G118700 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.400e-21
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRKVVGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKVVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Match: K4CND0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.400e-21
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

		  

Query: 154 LRTRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           L TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRK VGIWGCKDCGKVK GGAYTL
Sbjct: 14  LGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTL 71
[Close]
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.900e-23
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQHNKYFCEFCGKY+VKRKVVGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.600e-22
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGK+AVKRK VGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.600e-22
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGK+AVKRK VGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.600e-22
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+KYFCEFCGKYAVKRK VGIWGCK CGKVK GGAYTL
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTL 71
[Close]
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.600e-22
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQH+K+FCEFCGK+AVKRK VGIWGCKDCGKVK GGAYTL
Sbjct: 16  TRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTL 71
[Close]
BLAST of Spo14990.1 vs. TAIR (Arabidopsis)
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.200e-24
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA+L K+I+KMEVSQHNKYFCEFCGKY+VKRKVVGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTM 71
[Close]
BLAST of Spo14990.1 vs. TAIR (Arabidopsis)
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.400e-23
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 156 TRSGATLCKKIRKMEVSQHNKYFCEFCGKYAVKRKVVGIWGCKDCGKVKVGGAYTL 212
           TR GA++ K+I+KMEVSQH+KYFCEFCGKY VKRK VGIWGCKDCGKVK GGAYT+
Sbjct: 16  TRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTM 71
The following BLAST results are available for this feature:
BLAST of Spo14990.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|955330835|ref|XP_014633432.1|1.3e-2180.3PREDICTED: 60S ribosomal prote... [more]
gi|475626856|gb|EMT33497.1|2.8e-2182.760S ribosomal protein L37a [Ae... [more]
gi|703152903|ref|XP_010110542.1|6.2e-2187.5hypothetical protein L484_0233... [more]
gi|720059303|ref|XP_010274533.1|6.2e-2187.5PREDICTED: 60S ribosomal prote... [more]
gi|15228411|ref|NP_187706.1|6.2e-2185.7putative 60S ribosomal protein... [more]
back to top
BLAST of Spo14990.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
N1R5C5_AEGTA2.0e-2182.760S ribosomal protein L37a OS=... [more]
W9SDH6_9ROSA4.3e-2187.5Uncharacterized protein OS=Mor... [more]
A0A0K9QR65_SPIOL5.7e-2197.9Uncharacterized protein (Fragm... [more]
A0A087H8N0_ARAAL7.4e-2185.7Uncharacterized protein OS=Ara... [more]
K4CND0_SOLLC7.4e-2184.4Uncharacterized protein OS=Sol... [more]
back to top
BLAST of Spo14990.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R37A1_ARATH3.9e-2385.7Putative 60S ribosomal protein... [more]
RL371_ORYSJ5.6e-2282.160S ribosomal protein L37a-1 O... [more]
RL372_ORYSJ5.6e-2282.160S ribosomal protein L37a-2 O... [more]
RL37A_GOSHI9.6e-2283.960S ribosomal protein L37a OS=... [more]
RL37A_PSEMZ9.6e-2282.160S ribosomal protein L37a OS=... [more]
back to top
BLAST of Spo14990.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G10950.12.2e-2485.7Zinc-binding ribosomal protein... [more]
AT3G60245.15.4e-2380.3Zinc-binding ribosomal protein... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002674Ribosomal protein L37aePFAMPF01780Ribosomal_L37aecoord: 155..212
score: 5.3
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 155..212
score: 3.9
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 156..212
score: 6.71

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo083310.76Barchart | Table
Spo111490.74Barchart | Table
Spo112340.68Barchart | Table