Spo19606 (gene) | SpinachBase

Overview


Name	Spo19606
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L14, chloroplastic
Location	SpoScf_06359 : 2580 .. 3854 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGTATTATAAGATGATGAAGTAGAATATTTGAATGAAATAGTAGATTGTGTATCACGTATATAGCTTTTATTTTTAATTTTTTATTAATTAATAATAATAAATTAATAAAAAGACATGTTGATTATATCAAATTTTTGGGGCACCACTTATTTTAGTTCATCATGGGTAAGGACACTATTGCTGATATAATAACCTGTATACGAAATGCTGACATGAATAGAAAAGGAACGGTTCGAATAGTATCTACTAACATCACCGAAAACATTGTTAAAATACTTTTACGAGAAGGCTTTATCGAAAATGCGAGAAAACATCAAGAAAGAAACAAATATTTTTTGGTTTTAACTCTGCGACATAGAAGAAACAAGAAAGGGCCTTATCTAAATACTTTCCATTTAAAAAGAGTCAGTCGACCTGGTCTACGAATCTATTCTAATTATCAACGAATTCCTAGAATTTTAGGTGGAATGGGGATTGCAATTCTTTCTACCTCGAGAGGTATAATGACAGATCGGGAGGCTCGACTAGAAGGAATTGGCGGAGAAATTTTATGTTATATATGGTAATCCCTATACTATTCGAATTGGATCCAAAATTTCCTACTTGTGAACAAAAAAAGAGAAAGGACAGCTTGTCTAATATCACTCCTCTATTAGTTGATACTTTAAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGGTATGTTCTGGGTTCGTTTAGATAATGAAGATCCGATTCTGGGTTATGTTTCAGGACGGATACGACGTAGTTCTATACGAATTCTACCGGGAGATAGAGTTAAGATTGAAGTAAGCCGTTATGATTCAACTAGAGGTCGTATAATTTATAGACTGCGCAACAAGGATTCGAACGATTAA

mRNA sequence

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGGTATGTTCTGGGTTCGTTTAGATAATGAAGATCCGATTCTGGGTTATGTTTCAGGACGGATACGACGTAGTTCTATACGAATTCTACCGGGAGATAGAGTTAAGATTGAAGTAAGCCGTTATGATTCAACTAGAGGTCGTATAATTTATAGACTGCGCAACAAGGATTCGAACGATTAA

Coding sequence (CDS)

ATGATTCAACCTCAGACCCATTTGAATGTAGCAGACAACAGCGGGGCTCGAGAATTGATGTGTATTCGAATCATAGGAGCTAGCAACCGTCGATATGCTCGTATTGGTGACGTTATTGTTGCTGTGATCAAAGAAGCAATCCCCAACACGCCCTTAGAAAGATCAGAAGTGATCAGAGCTGTAGTTGTACGTACTTGTAAAGAACTAAAACGCGACAACGGTATGATAATACGATATGATGACAATGCTGCAGTTATCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCAATTGCCCGGGAATTGCGACAAAAATTTGCGAAAATAGTTTCATTAGCTCCTGAGGGGGTTTTGTCTGGAATGAAAGAACAAAAATGGATTCATGAAGGTTTGATTACCGAATCACTTCCTAATGGTATGTTCTGGGTTCGTTTAGATAATGAAGATCCGATTCTGGGTTATGTTTCAGGACGGATACGACGTAGTTCTATACGAATTCTACCGGGAGATAGAGTTAAGATTGAAGTAAGCCGTTATGATTCAACTAGAGGTCGTATAATTTATAGACTGCGCAACAAGGATTCGAACGATTAA

Protein sequence

MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPEGVLSGMKEQKWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYDSTRGRIIYRLRNKDSND

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19606.1	Spo19606.1	mRNA

Homology

[Close]

BLAST of Spo19606.1 vs. NCBI nr
Match: gi|11497563|ref|NP_054971.1| (ribosomal protein L14 [Spinacia oleracea])

HSP 1 Score: 233.0 bits (593), Expect = 4.500e-58
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. NCBI nr
Match: gi|902181471|gb|KNA09754.1| (hypothetical protein SOVF_150420, partial [Spinacia oleracea])

HSP 1 Score: 230.7 bits (587), Expect = 2.200e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARE MCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARESMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. NCBI nr
Match: gi|910354353|ref|YP_009160839.1| (ribosomal protein L14 (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 229.6 bits (584), Expect = 5.000e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. NCBI nr
Match: gi|982898198|ref|YP_009221844.1| (ribosomal protein L14 (chloroplast) [Mesembryanthemum crystallinum])

HSP 1 Score: 228.8 bits (582), Expect = 8.500e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTR+FGAIARELRQ F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRVFGAIARELRQNFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. NCBI nr
Match: gi|12312|emb|CAA31717.1| (ribosomal protein L14 [Spinacia oleracea])

HSP 1 Score: 228.4 bits (581), Expect = 1.100e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAA-VIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAA VIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_150420 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.600e-57
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARE MCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARESMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8A5_9CARY (50S ribosomal protein L14, chloroplastic OS=Haloxylon ammodendron GN=rpl14 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.500e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K9G2_9CARY (50S ribosomal protein L14, chloroplastic OS=Haloxylon persicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.500e-57
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNR+YARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRQYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKF KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Match: H2BC32_9CARY (50S ribosomal protein L14, chloroplastic (Fragment) OS=Didierea madagascariensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.900e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTR+FGAIARELRQ F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRVFGAIARELRQNFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Match: H2BC38_POROL (50S ribosomal protein L14, chloroplastic (Fragment) OS=Portulaca oleracea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.900e-57
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTR+FGAIARELRQ F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRVFGAIARELRQNFTKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Match: RK14_SPIOL (50S ribosomal protein L14, chloroplastic OS=Spinacia oleracea GN=rpl14 PE=1 SV=2)

HSP 1 Score: 233.0 bits (593), Expect = 2.800e-60
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 120
           VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLAPE 119

[Close]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.200e-56
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PN PLERSEV+RA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTRIFGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Match: RK14_PLAOC (50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.200e-56
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PN PLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLSFTKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Match: RK14_EUCGG (50S ribosomal protein L14, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.200e-56
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQ+HLNVADNSGARELMCIRIIGASNRRYA IGD+IVAVIKEA+PNTPLERSEVIRA
Sbjct: 1   MIQPQSHLNVADNSGARELMCIRIIGASNRRYAHIGDIIVAVIKEALPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKRDNGMIIRYDDNAAV+IDQEGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.200e-56
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQTHLNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEA+PNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKEL+RDNGMIIRYDDNAAV+ID EGNPKGTR+FGAIARELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKGTRVFGAIARELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Match: ATCG00780.1 (ribosomal protein L14)

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-55
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1

		  
Query: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELMCIRIIGASNRRYA IGDVIVAVIKEAIPNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPE 120
           V+VRTCKELKR+NG IIRYDDNAAV+IDQEGNPKGTR+FGAI RELRQ  F KIVSLAPE
Sbjct: 61  VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPE 120

[Close]

BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 99.4 bits (246), Expect = 2.700e-21
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 1

		  
Query: 129 KWIHEGLITESLPNGMFWVRLDNEDPILGYVSGRIRRSSIRILPGDRVKIEVSRYDSTRG 188
           K + EGL+TESLPNGMF V L+N D ILGY+ G+IR++ IRILPGD+VK+E+S YDST+G
Sbjct: 72  KTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVYDSTKG 131

Query: 189 RIIYRLRNKD 199
           RII+R+ ++D
Sbjct: 132 RIIFRMSSRD 141

[Close]

BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Match: AT5G46160.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-19
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1

		  
Query: 2   IQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAV 61
           IQ  T L V DNSGA+++MCI+ +    ++ AR+GD IVA +KEA+PN  +++  V+  V
Sbjct: 48  IQMGTVLKVVDNSGAKKVMCIQAL--KGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGV 107

Query: 62  VVRTCKELKRDNGMIIRYDDNAAVIIDQ-------EGNPKGTRIFGAIARELR-QKFAKI 118
           VVR   +  R +G  +R+DDNA V++D        +  P GTR+FG +  ELR +K  KI
Sbjct: 108 VVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKI 167

[Close]

BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1

		  
Query: 8   LNVADNSGARELMCIRIIGASNRRY----ARIGDVIVAVIKEAIPNTPLERSEVIRAVVV 67
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AV+V
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLA 118
           R  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E    + +I S A
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 136

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BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.800e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1

		  
Query: 8   LNVADNSGARELMCIRIIGASNRRY----ARIGDVIVAVIKEAIPNTPLERSEVIRAVVV 67
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AV+V
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQKFAKIVSLA 118
           R  K  +R +G+ + ++DNA VI++ +G  KG+ I G I +E    + +I S A
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAA 136

The following BLAST results are available for this feature:

BLAST of Spo19606.1 vs. NCBI nr
BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
BLAST of Spo19606.1 vs. TAIR (Arabidopsis)

BLAST of Spo19606.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|11497563\|ref\|NP_054971.1\|	4.5e-58	100.	ribosomal protein L14 [Spinaci...	[more]
gi\|902181471\|gb\|KNA09754.1\|	2.2e-57	99.1	hypothetical protein SOVF_1504...	[more]
gi\|910354353\|ref\|YP_009160839.1\|	5.0e-57	97.4	ribosomal protein L14 (chlorop...	[more]
gi\|982898198\|ref\|YP_009221844.1\|	8.5e-57	96.6	ribosomal protein L14 (chlorop...	[more]
gi\|12312\|emb\|CAA31717.1\|	1.1e-56	99.1	ribosomal protein L14 [Spinaci...	[more]

BLAST of Spo19606.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QR25_SPIOL	1.6e-57	99.1	Uncharacterized protein (Fragm...	[more]
A0A0K0K8A5_9CARY	3.5e-57	97.4	50S ribosomal protein L14, chl...	[more]
A0A0K0K9G2_9CARY	3.5e-57	97.4	50S ribosomal protein L14, chl...	[more]
H2BC32_9CARY	5.9e-57	96.6	50S ribosomal protein L14, chl...	[more]
H2BC38_POROL	5.9e-57	96.6	50S ribosomal protein L14, chl...	[more]

BLAST of Spo19606.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RK14_SPIOL	2.8e-60	100.	50S ribosomal protein L14, chl...	[more]
RK14_COFAR	4.2e-56	92.5	50S ribosomal protein L14, chl...	[more]
RK14_PLAOC	4.2e-56	92.5	50S ribosomal protein L14, chl...	[more]
RK14_EUCGG	4.2e-56	91.6	50S ribosomal protein L14, chl...	[more]
RK14_CITSI	7.2e-56	91.6	50S ribosomal protein L14, chl...	[more]

BLAST of Spo19606.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
ATCG00780.1	1.3e-55	90.8	ribosomal protein L14	[more]
AT4G11175.1	2.7e-21	64.2	Nucleic acid-binding, OB-fold-...	[more]
AT5G46160.1	1.1e-19	42.7	Ribosomal protein L14p/L23e fa...	[more]
AT1G04480.1	1.8e-12	35.0	Ribosomal protein L14p/L23e fa...	[more]
AT2G33370.1	1.8e-12	35.0	Ribosomal protein L14p/L23e fa...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	GENE3D	2.40.150.20		coord: 1..119 score: 3.9
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 1..121 score: 25
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..121 score: 2.8
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 1..119 score: 1.8
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 1..121 score: 9.5
IPR000218	Ribosomal protein L14P	unknown	SSF50193	Ribosomal protein L14	coord: 1..119 score: 3.27
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 124..195 score: 21
IPR004368	Translation initiation factor IF-1	TIGRFAMs	TIGR00008	TIGR00008	coord: 126..194 score: 6.2
IPR005745	Ribosomal protein L14P, bacterial-type	TIGRFAMs	TIGR01067	TIGR01067	coord: 1..119 score: 1.1
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 133..193 score: 1.8
IPR006196	RNA-binding domain, S1, IF1 type	PROFILE	PS50832	S1_IF1_TYPE	coord: 133..195 score: 18
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 126..194 score: 3.6
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 125..193 score: 2.08
IPR019972	Ribosomal protein L14P, conserved site	PROSITE	PS00049	RIBOSOMAL_L14	coord: 60..86 scor
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 127..195 score: 8.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006413	translational initiation
biological_process	GO:0006396	RNA processing
biological_process	GO:0006412	translation
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005524	ATP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13649	0.97	Barchart \| Table
Spo17932	0.97	Barchart \| Table
Spo20629	0.97	Barchart \| Table
Spo19607	0.92	Barchart \| Table
Spo13650	0.86	Barchart \| Table
Spo06567	0.81	Barchart \| Table
Spo09675	0.75	Barchart \| Table
Spo14817	0.67	Barchart \| Table
Spo01478	0.67	Barchart \| Table
Spo17927	0.66	Barchart \| Table