Spo18370 (gene)

Overview
NameSpo18370
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S10-1
LocationSpoScf_07949 : 335 .. 1775 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGGTAATGGCTTGCTCTTTTTTTTTTATAGTCAAAATGGTTAAGGTTGTCATAATTGTGATTTCCCTTATGATGGTAAACACAAGTTTAATACGGAGTACAAACTTATCTTATTAGTGGCGCTCTGCTGATATTGTTGTTTTTTCAAATTGGATGTCAGCTTTCTAACTTGGTTGTTATGTTGTTGAATTTTTTACCAGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGTAAGTGTGAAACGTTGATAGTGCTAATTGAGTTTCTTGGGTAGCTTCTGTTTTTTAATAGTCCTAATTGCACTTGGATAGTACTCCGTATTAACTATTAAGACCCTAATATTTATTTTCTTTGATGATCTGAATTTTTATTACAATGTTGTTACGTTACATTCCGGTGATTCAGTGAAGCGAGCTATACCTAGTTATCTACTGAATGATATGCTGTACTACCTTCTGTAACTTAAAACGATGGAACTGATCACATTTGTGAAGAAGATATATGCAATAGAGTGGAATCCTACGTGTCATGATTGTTGCCATTACTTTGGCGTTGTTGAATATCAGTGATGTGTAGAATTTGGATATAAATAATTCTACAATATTCTATGAACCTATTCAAGGGTTATGGATATGAGATTAGATCCTAGGCCCAGTTCAGCTGCTGAGATAGCTTTGTCCAGAATACCGGTACTTAGAAGACTTAGTTGATAATTCTATTTGGATCTGAATTTCCTCTATATAGTAGCATAGTGTTTGCGTGAAAGGTAAATTAATCTGTATGAATACAATGCTATATATTTCCCTTGTCACCTCCTGAAGGATGTGTAAACATGTGGATCATGGATAGAACCAGTATTAGATGGCTGATTTTATATTGCCTAAAACAGGGCTTACTCTTTGTCTGTGGTCGTATAAGGTGTGAGTTTGTGATTGTCTCCCCTCTCCCCATTGTACCAGATTCGTGTTTGATGATACATATTTTATTATTTCACAGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGAAACCATAAACTTCTATGAATAGGACTATTCCAATTTTGAATGTCATGACTGTTTTTGATTGAGTTGAAGAGAAATACAATACAATGTTTTGCAAGAGGCTTCCTTAGACTAACTACATGTACTTTGACTTCTTTAATTTAGTTTTTTTTCCCTTTGGTTGGTAGATGATGTGAATACTCAAGTGATCATCTGCTTGGCCACCATTTTCAGATTTTGTTTATTG

mRNA sequence

ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGAAACCATAAACTTCTATGAATAGGACTATTCCAATTTTGAATGTCATGACTGTTTTTGATTGAGTTGAAGAGAAATACAATACAATGTTTTGCAAGAGGCTTCCTTAGACTAACTACATGTACTTTGACTTCTTTAATTTAGTTTTTTTTCCCTTTGGTTGGTAGATGATGTGAATACTCAAGTGATCATCTGCTTGGCCACCATTTTCAGATTTTGTTTATTG

Coding sequence (CDS)

ATGAAGCCTGCTGGCAGGCCAATGGGCGGCGCACCTGGCCCACGTGGGGGATCGCGATTTGAAGGAGACAGGCCTAGATTTGGTGATAGGGATGGCTACCGTTCTGGACCTCGTGGTGAAGGTGATTCCGGTGACAAGGGCGGTGCTCCTGCTGATTACAGACCATCATTTGGGGGTTCTTCTAGTGGTAGGCCAGGCTTTGGTCGTGGAGCTGGAAGCTTTGGTGCTGGACCAACAAGTTCAATTCTTTCTTGA

Protein sequence

MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGSSSGRPGFGRGAGSFGAGPTSSILS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo18370.1Spo18370.1mRNA


Homology
[Close]
BLAST of Spo18370.1 vs. NCBI nr
Match: gi|902233007|gb|KNA22894.1| (hypothetical protein SOVF_029460 [Spinacia oleracea])

HSP 1 Score: 155.2 bits (391), Expect = 5.000e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 

		  

Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS
Sbjct: 95  MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSILS 85
           SSGR GFGRGAGSFGAGPTSS LS
Sbjct: 155 SSGRSGFGRGAGSFGAGPTSSNLS 178
[Close]
BLAST of Spo18370.1 vs. NCBI nr
Match: gi|731330985|ref|XP_010676422.1| (PREDICTED: 40S ribosomal protein S10-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 2.600e-28
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 

		  

Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGG PG RGGSRFEGDRPRFGDR+GYR+GPR  GD GDKGGAPADYRPSFGG 
Sbjct: 95  MKPAGRPMGGPPG-RGGSRFEGDRPRFGDREGYRAGPRASGDYGDKGGAPADYRPSFGG- 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSIL 84
           SSGRPGFGRGAGSFGAGPTSS L
Sbjct: 155 SSGRPGFGRGAGSFGAGPTSSDL 175
[Close]
BLAST of Spo18370.1 vs. NCBI nr
Match: gi|702337228|ref|XP_010055689.1| (PREDICTED: 40S ribosomal protein S10-like [Eucalyptus grandis])

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-20
Identity = 65/86 (75.58%), Postives = 66/86 (76.74%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG---PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSF 61
           KPAGRPMGG P    PRG  RFEG   RFGDR+GYRSGPRG  GD GDKGGAPADYRPSF
Sbjct: 96  KPAGRPMGGGPPGDRPRGPPRFEGGERRFGDREGYRSGPRGPGGDFGDKGGAPADYRPSF 155

Query: 62  GGSSSGRPGFGRGAGSFGAGPTSSIL 84
           GG   GRPGFGRG G FGAGP SS L
Sbjct: 156 GG-PGGRPGFGRGGGGFGAGPASSNL 180
[Close]
BLAST of Spo18370.1 vs. NCBI nr
Match: gi|223549752|gb|EEF51240.1| (40S ribosomal protein S10, putative [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 156 GSG-GRPGFGRGAGSFGAGPASSNL 179
[Close]
BLAST of Spo18370.1 vs. NCBI nr
Match: gi|1000983215|ref|XP_002509853.2| (PREDICTED: uncharacterized protein LOC8287428 [Ricinus communis])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 479 KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 538

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 539 GSG-GRPGFGRGAGSFGAGPASSNL 562
[Close]
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVF2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029460 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.500e-35
Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1 

		  

Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS
Sbjct: 95  MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSILS 85
           SSGR GFGRGAGSFGAGPTSS LS
Sbjct: 155 SSGRSGFGRGAGSFGAGPTSSNLS 178
[Close]
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIX8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.800e-28
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 1 

		  

Query: 1   MKPAGRPMGGAPGPRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGGS 60
           MKPAGRPMGG PG RGGSRFEGDRPRFGDR+GYR+GPR  GD GDKGGAPADYRPSFGG 
Sbjct: 95  MKPAGRPMGGPPG-RGGSRFEGDRPRFGDREGYRAGPRASGDYGDKGGAPADYRPSFGG- 154

Query: 61  SSGRPGFGRGAGSFGAGPTSSIL 84
           SSGRPGFGRGAGSFGAGPTSS L
Sbjct: 155 SSGRPGFGRGAGSFGAGPTSSDL 175
[Close]
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A059C1U1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00655 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.400e-20
Identity = 65/86 (75.58%), Postives = 66/86 (76.74%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG---PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSF 61
           KPAGRPMGG P    PRG  RFEG   RFGDR+GYRSGPRG  GD GDKGGAPADYRPSF
Sbjct: 96  KPAGRPMGGGPPGDRPRGPPRFEGGERRFGDREGYRSGPRGPGGDFGDKGGAPADYRPSF 155

Query: 62  GGSSSGRPGFGRGAGSFGAGPTSSIL 84
           GG   GRPGFGRG G FGAGP SS L
Sbjct: 156 GG-PGGRPGFGRGGGGFGAGPASSNL 180
[Close]
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: B9RCG9_RICCO (40S ribosomal protein S10, putative OS=Ricinus communis GN=RCOM_1688110 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGE-GDSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG  G+ GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPPGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSIL 84
           GS  GRPGFGRGAGSFGAGP SS L
Sbjct: 156 GSG-GRPGFGRGAGSFGAGPASSNL 179
[Close]
BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Match: A0A067K0R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20545 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.400e-20
Identity = 64/86 (74.42%), Postives = 69/86 (80.23%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG--PRGGSRFEGDRPRFGDRDGYRSGPRGEG-DSGDKGGAPADYRPSFG 61
           KP GRPMGG PG  PRG SRF+G+R   GDRDGYR GPRG G + GDKGGAPADYRP++G
Sbjct: 96  KPLGRPMGGPPGDRPRGPSRFDGERRFGGDRDGYRGGPRGPGGEFGDKGGAPADYRPTYG 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTSSILS 85
           GS  GRPGFGRGAG FGAGP SS LS
Sbjct: 156 GSG-GRPGFGRGAGGFGAGPASSNLS 180
[Close]
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS10B_ORYSJ (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-18
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1 

		  

Query: 2   KPAGRPMG-GAPG--PRGGSRFEGDRPRFGDRDGYRSGPRG-EGD-SGDKGGAPADYRPS 61
           +P GRP G G PG  PRG  RFEGDRPRFGDRDGYR GPRG  GD  G+KGGAPA+++PS
Sbjct: 96  RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155

Query: 62  FGGSSSGRPGFGR-GAGSFGAGPTSS 82
           F  SS GRPGFGR G G FGAGPTSS
Sbjct: 156 F-RSSGGRPGFGRGGGGGFGAGPTSS 180
[Close]
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS10A_ORYSJ (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-18
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 1 

		  

Query: 2   KPAGRPMG-GAPG--PRGGSRFEGDRPRFGDRDGYRSGPRG-EGD-SGDKGGAPADYRPS 61
           +P GRP G G PG  PRG  RFEGDRPRFGDRDGYR GPRG  GD  G+KGGAPA+++PS
Sbjct: 96  RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155

Query: 62  FGGSSSGRPGFGR-GAGSFGAGPTSS 82
           F  SS GRPGFGR G G FGAGPTSS
Sbjct: 156 F-RSSGGRPGFGRGGGGGFGAGPTSS 180
[Close]
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.800e-16
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPGPR--GGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGG 61
           KP GRP GG PG R  G  R +GDRPRFGDRDGYR GPRG GD  +KGGAPAD++PSF G
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRG-GD--EKGGAPADFQPSFQG 155

Query: 62  SSSGRPGFGRGAGSFGAGPTS 81
              GRPGFGRGAG + A   S
Sbjct: 156 -GGGRPGFGRGAGGYSAAAPS 172
[Close]
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-14
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPGPRG-GSRFE-GDRPRFGDRDGYRSGPRGEGD-SGDKGGAPADYRPSFG 61
           KP GRP GG PG R  G R E GDRPRFGDRDGYR+GPR  G+  G+KGGAPADY+PSF 
Sbjct: 96  KPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQ 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTS 81
           G  SGR GFGRGAG + A   S
Sbjct: 156 G--SGR-GFGRGAGGYSAAAPS 174
[Close]
BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.200e-14
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG-PRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSF-GG 61
           KP GRP GG    PRG  R +G+R RFGDRDGYR GP+  G+ GDK GAPADY+P F GG
Sbjct: 97  KPLGRPFGGGGDRPRGPPRGDGER-RFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGG 156

Query: 62  SSSGRPGFGRGAGSFGAGPTSSIL 84
           +   R GFGRGAG FG G   S L
Sbjct: 157 AGGARQGFGRGAGGFGGGAAGSDL 179
[Close]
BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 84.0 bits (206), Expect = 5.000e-17
Identity = 54/81 (66.67%), Postives = 59/81 (72.84%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPGPR--GGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSFGG 61
           KP GRP GG PG R  G  R +GDRPRFGDRDGYR GPRG GD  +KGGAPAD++PSF G
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRGGPRG-GD--EKGGAPADFQPSFQG 155

Query: 62  SSSGRPGFGRGAGSFGAGPTS 81
              GRPGFGRGAG + A   S
Sbjct: 156 -GGGRPGFGRGAGGYSAAAPS 172
[Close]
BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 80.1 bits (196), Expect = 7.200e-16
Identity = 55/82 (67.07%), Postives = 60/82 (73.17%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPGPRG-GSRFE-GDRPRFGDRDGYRSGPRGEGD-SGDKGGAPADYRPSFG 61
           KP GRP GG PG R  G R E GDRPRFGDRDGYR+GPR  G+  G+KGGAPADY+PSF 
Sbjct: 96  KPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQ 155

Query: 62  GSSSGRPGFGRGAGSFGAGPTS 81
           G  SGR GFGRGAG + A   S
Sbjct: 156 G--SGR-GFGRGAGGYSAAAPS 174
[Close]
BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-15
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1 

		  

Query: 2   KPAGRPMGGAPG-PRGGSRFEGDRPRFGDRDGYRSGPRGEGDSGDKGGAPADYRPSF-GG 61
           KP GRP GG    PRG  R +G+R RFGDRDGYR GP+  G+ GDK GAPADY+P F GG
Sbjct: 97  KPLGRPFGGGGDRPRGPPRGDGER-RFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGG 156

Query: 62  SSSGRPGFGRGAGSFGAGPTSSIL 84
           +   R GFGRGAG FG G   S L
Sbjct: 157 AGGARQGFGRGAGGFGGGAAGSDL 179
The following BLAST results are available for this feature:
BLAST of Spo18370.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902233007|gb|KNA22894.1|5.0e-3597.6hypothetical protein SOVF_0294... [more]
gi|731330985|ref|XP_010676422.1|2.6e-2889.1PREDICTED: 40S ribosomal prote... [more]
gi|702337228|ref|XP_010055689.1|2.0e-2075.5PREDICTED: 40S ribosomal prote... [more]
gi|223549752|gb|EEF51240.1|2.6e-2075.240S ribosomal protein S10, put... [more]
gi|1000983215|ref|XP_002509853.2|2.6e-2075.2PREDICTED: uncharacterized pro... [more]
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BLAST of Spo18370.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RVF2_SPIOL3.5e-3597.6Uncharacterized protein OS=Spi... [more]
A0A0J8CIX8_BETVU1.8e-2889.1Uncharacterized protein OS=Bet... [more]
A0A059C1U1_EUCGR1.4e-2075.5Uncharacterized protein OS=Euc... [more]
B9RCG9_RICCO1.8e-2075.240S ribosomal protein S10, put... [more]
A0A067K0R0_JATCU2.4e-2074.4Uncharacterized protein OS=Jat... [more]
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BLAST of Spo18370.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS10B_ORYSJ1.9e-1872.040S ribosomal protein S10-2 OS... [more]
RS10A_ORYSJ1.9e-1872.040S ribosomal protein S10-1 OS... [more]
RS101_ARATH8.8e-1666.640S ribosomal protein S10-1 OS... [more]
RS103_ARATH1.3e-1467.040S ribosomal protein S10-3 OS... [more]
RS102_ARATH2.2e-1460.740S ribosomal protein S10-2 OS... [more]
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BLAST of Spo18370.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G25740.15.0e-1766.6RNA binding Plectin/S10 domain... [more]
AT5G52650.17.2e-1667.0RNA binding Plectin/S10 domain... [more]
AT5G41520.11.2e-1560.7RNA binding Plectin/S10 domain... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR1214640S RIBOSOMAL PROTEIN S10coord: 2..82
score: 2.2
NoneNo IPR availablePANTHERPTHR12146:SF7SUBFAMILY NOT NAMEDcoord: 2..82
score: 2.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
biological_process GO:0034968 histone lysine methylation
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0009932 cell tip growth
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0019877 diaminopimelate biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0009409 response to cold
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0007017 microtubule-based process
biological_process GO:0051258 protein polymerization
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0015976 carbon utilization
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0006020 inositol metabolic process
biological_process GO:0006013 mannose metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006833 water transport
biological_process GO:0010162 seed dormancy process
biological_process GO:0048767 root hair elongation
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009853 photorespiration
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0046686 response to cadmium ion
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
biological_process GO:0006544 glycine metabolic process
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016567 protein ubiquitination
biological_process GO:0001510 RNA methylation
biological_process GO:0007018 microtubule-based movement
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0008356 asymmetric cell division
biological_process GO:0009926 auxin polar transport
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0007389 pattern specification process
biological_process GO:0008361 regulation of cell size
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0010015 root morphogenesis
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0016126 sterol biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005618 cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009507 chloroplast
cellular_component GO:0044424 intracellular part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
cellular_component GO:0005829 cytosol
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005525 GTP binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0005515 protein binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase
molecular_function GO:0003677 DNA binding
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0004332 fructose-bisphosphate aldolase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo146920.90Barchart | Table
Spo206470.75Barchart | Table
Spo234980.75Barchart | Table
Spo048830.74Barchart | Table
Spo192360.73Barchart | Table
Spo050640.73Barchart | Table
Spo043810.72Barchart | Table
Spo172710.72Barchart | Table
Spo253060.72Barchart | Table
Spo116790.72Barchart | Table
Spo230380.72Barchart | Table
Spo144040.71Barchart | Table
Spo209970.71Barchart | Table
Spo070160.71Barchart | Table
Spo070170.71Barchart | Table
Spo132790.71Barchart | Table
Spo134810.71Barchart | Table
Spo224010.71Barchart | Table
Spo252060.70Barchart | Table
Spo029280.70Barchart | Table
Spo121910.70Barchart | Table
Spo192000.70Barchart | Table
Spo023970.70Barchart | Table
Spo101470.70Barchart | Table
Spo219220.69Barchart | Table
Spo236220.69Barchart | Table
Spo029420.69Barchart | Table
Spo232200.69Barchart | Table
Spo069040.69Barchart | Table
Spo126810.68Barchart | Table
Spo076680.68Barchart | Table
Spo014910.68Barchart | Table
Spo063180.68Barchart | Table
Spo268840.68Barchart | Table
Spo067060.68Barchart | Table
Spo123110.68Barchart | Table
Spo029890.67Barchart | Table
Spo046670.67Barchart | Table
Spo052440.67Barchart | Table
Spo080820.67Barchart | Table
Spo086910.67Barchart | Table
Spo118500.67Barchart | Table
Spo123040.67Barchart | Table
Spo176620.67Barchart | Table
Spo179030.67Barchart | Table
Spo189010.67Barchart | Table
Spo207890.67Barchart | Table
Spo223940.67Barchart | Table
Spo159610.66Barchart | Table
Spo148750.66Barchart | Table
Spo136210.66Barchart | Table
Spo271540.66Barchart | Table
Spo127590.66Barchart | Table
Spo043900.66Barchart | Table
Spo132880.65Barchart | Table
Spo194130.65Barchart | Table
Spo078210.65Barchart | Table
Spo013980.65Barchart | Table
Spo194400.65Barchart | Table
Spo010610.65Barchart | Table
Spo019990.65Barchart | Table
Spo135610.65Barchart | Table