Spo21850 (gene)

Overview
NameSpo21850
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_16415 : 230 .. 829 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCCATCCTCCTCCTCCGCCCCGCTGTGGGCGGGTTGGGGGAGACGCGATGCGTGACGCCCAGGCAGGCGTGCCCTCGGCCAGAAGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCNCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTTTAATGTTTTATACGACTTGGTGCCACGCCCCGACCCGGCGAACCGAGAAGGGGCGGGCACGCTTGTATTCATGTTCCTTGGCGCAGACCGCGCCGTGGTTCGTTGTTGTGCTGGAGGGGCTCCCCGTCCCGCCGAGGCGAGAAGGCTTGCACCCCCCGGCGCGGGCTCGCGGGCGCCGGAGCGCCCCCTCCCCCGCTTATGATAAACACGTTCGCTGGTCGCTCTGCTGGGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGA

mRNA sequence

ATGGGAGGCCATCCTCCTCCTCCGCCCCGCTGTGGGCGGGTTGGGGGAGACGCGATGCGTGACGCCCAGGCAGGCGTGCCCTCGGCCAGAAGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCNCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTTTAATGTTTTATACGACTTGGTGCCACGCCCCGACCCGGCGAACCGAGAAGGGGCGGGCACGCTTGTATTCATGTTCCTTGGCGCAGACCGCGCCGTGGTTCGTTGTTGTGCTGGAGGGGCTCCCCGTCCCGCCGAGGCGAGAAGGCTTGCACCCCCCGGCGCGGGCTCGCGGGCGCCGGAGCGCCCCCTCCCCCGCTTATGATAAACACGTTCGCTGGTCGCTCTGCTGGGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGA

Coding sequence (CDS)

ATGGGAGGCCATCCTCCTCCTCCGCCCCGCTGTGGGCGGGTTGGGGGAGACGCGATGCGTGACGCCCAGGCAGGCGTGCCCTCGGCCAGAAGGCTTCGGGCGCAACTTGCGTTCAAAGACTCGATGGTTCACGGGATTCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCNCTGCTATTCACACCAAGTATCGCATTTCGCTACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTTTAATGTTTTATACGACTTGGTGCCACGCCCCGACCCGGCGAACCGAGAAGGGGCGGGCACGCTTGTATTCATGTTCCTTGGCGCAGACCGCGCCGTGGTTCGTTGTTGTGCTGGAGGGGCTCCCCGTCCCGCCGAGGCGAGAAGGCTTGCACCCCCCGGCGCGGGCTCGCGGGCGCCGGAGCGCCCCCTCCCCCGCTTATGATAAACACGTTCGCTGGTCGCTCTGCTGGGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGA

Protein sequence

MGGHPPPPPRCGRVGGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXCYSHQVSHFATFFIDARAEISVAESRLMFYTTWCHAPTRRTEKGRARLYSCSLAQTAPWFVVVLEGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLLRLLLPLNDKVQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21850.1Spo21850.1mRNA


Homology
[Close]
BLAST of Spo21850.1 vs. NCBI nr
Match: gi|902159808|gb|KNA06354.1| (hypothetical protein SOVF_181660, partial [Spinacia oleracea])

HSP 1 Score: 263.1 bits (671), Expect = 4.000e-67
Identity = 126/131 (96.18%), Postives = 126/131 (96.18%), Query Frame = 1 

		  

Query: 69  CYSHQVSHFATFFIDARAEISVAESRLMFYTTWCHAPTRRTEKGRARLYSCSLAQTAPWF 128
           C SHQVSHFATFFIDARAEISVAESRLMFYTTWC APTRRT KGRARLYSCSLAQTAP F
Sbjct: 55  CNSHQVSHFATFFIDARAEISVAESRLMFYTTWCRAPTRRTGKGRARLYSCSLAQTAPGF 114

Query: 129 VVVLEGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL 188
           VVV EGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL
Sbjct: 115 VVVPEGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL 174

Query: 189 RLLLPLNDKVQ 200
           RLLLPLNDKVQ
Sbjct: 175 RLLLPLNDKVQ 185
[Close]
BLAST of Spo21850.1 vs. NCBI nr
Match: gi|922327861|ref|XP_013443323.1| (hypothetical protein MTR_0021s0160 [Medicago truncatula])

HSP 1 Score: 112.8 bits (281), Expect = 6.700e-22
Identity = 86/187 (45.99%), Postives = 94/187 (50.27%), Query Frame = 1 

		  

Query: 14  VGGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXCYSHQ 73
           VG    RDAQAGVPSA   RAQLAFKDSMV GIL FTP IAFRYVLHR       C S  
Sbjct: 344 VGSVFWRDAQAGVPSAEWPRAQLAFKDSMVRGILQFTPGIAFRYVLHR-------CESR- 403

Query: 74  VSHFATFFIDARAEISVAESRLMFYTTWCHAPTRRTEKGRARLYSCSLAQTAPWFVVVLE 133
                    D R   S     L  + T                  CSL  +APW  V+L 
Sbjct: 404 ---------DIRCRESCG---LNIFATQAQ---------------CSLTPSAPW--VLLP 463

Query: 134 GLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWA-GFDNDPSAGSPTETLLRLLL 193
             P P    G     R  GR +  +         ++C+  G DNDPSAGSPTETLLRLLL
Sbjct: 464 RAPAPRSGGG-----RGIGRTTNNAIVGGLDDASTVCFGQGHDNDPSAGSPTETLLRLLL 488

Query: 194 PLNDKVQ 200
           PLNDKVQ
Sbjct: 524 PLNDKVQ 488
[Close]
BLAST of Spo21850.1 vs. NCBI nr
Match: gi|496379958|ref|WP_009088948.1| (hypothetical protein [Elizabethkingia anophelis])

HSP 1 Score: 93.6 bits (231), Expect = 4.200e-16
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = 1 

		  

Query: 15 GGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
          GG  + D QA VPSARRL AQLAFKDSMVHGIL FTPSIAFRYVLHRCESRDI C
Sbjct: 42 GGTTICDTQADVPSARRLGAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRC 96
[Close]
BLAST of Spo21850.1 vs. NCBI nr
Match: gi|953504096|emb|CEG35069.1| (hypothetical protein PHALS_14592 [Plasmopara halstedii])

HSP 1 Score: 90.9 bits (224), Expect = 2.700e-15
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 1 

		  

Query: 15 GGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
          GGD MRDAQA VPS   LRAQLAFK+SMVHGIL FTPSIAF YVLHRC SRDI C
Sbjct: 4  GGDVMRDAQADVPSTEWLRAQLAFKNSMVHGILQFTPSIAFCYVLHRCVSRDIRC 58
[Close]
BLAST of Spo21850.1 vs. NCBI nr
Match: gi|168068591|ref|XP_001786133.1| (predicted protein [Physcomitrella patens])

HSP 1 Score: 67.4 bits (163), Expect = 3.200e-8
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 

		  

Query: 13  RVGGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
           R+GG    DA AG+PS    RAQLAFK+SM+HGIL FT  IAFR VLHRC+S+DI C
Sbjct: 166 RIGG-CRDDALAGMPSDEP-RAQLAFKNSMIHGILQFTLRIAFRCVLHRCKSQDIRC 220
[Close]
BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGE4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_181660 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.800e-67
Identity = 126/131 (96.18%), Postives = 126/131 (96.18%), Query Frame = 1 

		  

Query: 69  CYSHQVSHFATFFIDARAEISVAESRLMFYTTWCHAPTRRTEKGRARLYSCSLAQTAPWF 128
           C SHQVSHFATFFIDARAEISVAESRLMFYTTWC APTRRT KGRARLYSCSLAQTAP F
Sbjct: 55  CNSHQVSHFATFFIDARAEISVAESRLMFYTTWCRAPTRRTGKGRARLYSCSLAQTAPGF 114

Query: 129 VVVLEGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL 188
           VVV EGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL
Sbjct: 115 VVVPEGLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWAGFDNDPSAGSPTETLL 174

Query: 189 RLLLPLNDKVQ 200
           RLLLPLNDKVQ
Sbjct: 175 RLLLPLNDKVQ 185
[Close]
BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Match: A0A072TKH6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0160 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.700e-22
Identity = 86/187 (45.99%), Postives = 94/187 (50.27%), Query Frame = 1 

		  

Query: 14  VGGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXCYSHQ 73
           VG    RDAQAGVPSA   RAQLAFKDSMV GIL FTP IAFRYVLHR       C S  
Sbjct: 344 VGSVFWRDAQAGVPSAEWPRAQLAFKDSMVRGILQFTPGIAFRYVLHR-------CESR- 403

Query: 74  VSHFATFFIDARAEISVAESRLMFYTTWCHAPTRRTEKGRARLYSCSLAQTAPWFVVVLE 133
                    D R   S     L  + T                  CSL  +APW  V+L 
Sbjct: 404 ---------DIRCRESCG---LNIFATQAQ---------------CSLTPSAPW--VLLP 463

Query: 134 GLPVPPRREGLHPPARARGRRSAPSPAYDKHVRWSLCWA-GFDNDPSAGSPTETLLRLLL 193
             P P    G     R  GR +  +         ++C+  G DNDPSAGSPTETLLRLLL
Sbjct: 464 RAPAPRSGGG-----RGIGRTTNNAIVGGLDDASTVCFGQGHDNDPSAGSPTETLLRLLL 488

Query: 194 PLNDKVQ 200
           PLNDKVQ
Sbjct: 524 PLNDKVQ 488
[Close]
BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Match: A0A0D3AW21_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-15
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1 

		  

Query: 15  GGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
           GG  + + QA VPSARRL AQLAFKDSMVHGIL FTPSIAFRYVLHRCESRDI C
Sbjct: 294 GGTTICNTQADVPSARRLGAQLAFKDSMVHGILQFTPSIAFRYVLHRCESRDIRC 348
[Close]
BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Match: A0A0P1A4T5_9STRA (Uncharacterized protein OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.900e-15
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 1 

		  

Query: 15 GGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
          GGD MRDAQA VPS   LRAQLAFK+SMVHGIL FTPSIAF YVLHRC SRDI C
Sbjct: 4  GGDVMRDAQADVPSTEWLRAQLAFKNSMVHGILQFTPSIAFCYVLHRCVSRDIRC 58
[Close]
BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Match: A9U5J8_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_102707 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-8
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 

		  

Query: 13  RVGGDAMRDAQAGVPSARRLRAQLAFKDSMVHGILLFTPSIAFRYVLHRCESRDIXC 70
           R+GG    DA AG+PS    RAQLAFK+SM+HGIL FT  IAFR VLHRC+S+DI C
Sbjct: 166 RIGG-CRDDALAGMPSDEP-RAQLAFKNSMIHGILQFTLRIAFRCVLHRCKSQDIRC 220
The following BLAST results are available for this feature:
BLAST of Spo21850.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902159808|gb|KNA06354.1|4.0e-6796.1hypothetical protein SOVF_1816... [more]
gi|922327861|ref|XP_013443323.1|6.7e-2245.9hypothetical protein MTR_0021s... [more]
gi|496379958|ref|WP_009088948.1|4.2e-1683.6hypothetical protein [Elizabet... [more]
gi|953504096|emb|CEG35069.1|2.7e-1581.8hypothetical protein PHALS_145... [more]
gi|168068591|ref|XP_001786133.1|3.2e-864.9predicted protein [Physcomitre... [more]
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BLAST of Spo21850.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGE4_SPIOL2.8e-6796.1Uncharacterized protein (Fragm... [more]
A0A072TKH6_MEDTR4.7e-2245.9Uncharacterized protein OS=Med... [more]
A0A0D3AW21_BRAOL1.1e-1581.8Uncharacterized protein OS=Bra... [more]
A0A0P1A4T5_9STRA1.9e-1581.8Uncharacterized protein OS=Pla... [more]
A9U5J8_PHYPA2.2e-864.9Predicted protein OS=Physcomit... [more]
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BLAST of Spo21850.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21850.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo205490.69Barchart | Table
Spo033150.68Barchart | Table
Spo237470.65Barchart | Table