Spo08874 (gene) | SpinachBase

Overview


Name	Spo08874
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(Sigma factor sigb regulation protein rsbq, putative) (3.1.1.1)
Location	SpoScf_20790 : 1115 .. 1483 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCAGAATCTATTACAAGCACTGAATGTGAGAGTAGAAGGGACGGGTGAGAAGTACCTGGTGTTAGCCCATGGGTTTGGAACTGACCAATCAGCATGGCAAAGAATCCTACCTTATTTTACTCCGTACTACCGTGTCATACTCTATGACTTGGCCTGTGCTGGGAGTGTCAACCCTGACTTCTTCGACTTCCATCGATACACCACCCTCGACGCCTACGTCGACGACCTCCTCGACATCCTCGACGCGCTCGCTGTCACGCGTTGCGCGTATGTTGGCCATTCTGTTTCAGCTATGATCGGCCTTCTTGCTTCTATACGTCGTCGTGATCTTTTCTCTAAGCAAATACTTGTTGGTGCTTCTCCT

mRNA sequence

ATGGGGCAGAATCTATTACAAGCACTGAATGTGAGAGTAGAAGGGACGGGTGAGAAGTACCTGGTGTTAGCCCATGGGTTTGGAACTGACCAATCAGCATGGCAAAGAATCCTACCTTATTTTACTCCGTACTACCGTGTCATACTCTATGACTTGGCCTGTGCTGGGAGTGTCAACCCTGACTTCTTCGACTTCCATCGATACACCACCCTCGACGCCTACGTCGACGACCTCCTCGACATCCTCGACGCGCTCGCTGTCACGCGTTGCGCGTATGTTGGCCATTCTGTTTCAGCTATGATCGGCCTTCTTGCTTCTATACGTCGTCGTGATCTTTTCTCTAAGCAAATACTTGTTGGTGCTTCTCCT

Coding sequence (CDS)

ATGGGGCAGAATCTATTACAAGCACTGAATGTGAGAGTAGAAGGGACGGGTGAGAAGTACCTGGTGTTAGCCCATGGGTTTGGAACTGACCAATCAGCATGGCAAAGAATCCTACCTTATTTTACTCCGTACTACCGTGTCATACTCTATGACTTGGCCTGTGCTGGGAGTGTCAACCCTGACTTCTTCGACTTCCATCGATACACCACCCTCGACGCCTACGTCGACGACCTCCTCGACATCCTCGACGCGCTCGCTGTCACGCGTTGCGCGTATGTTGGCCATTCTGTTTCAGCTATGATCGGCCTTCTTGCTTCTATACGTCGTCGTGATCTTTTCTCTAAGCAAATACTTGTTGGTGCTTCTCCT

Protein sequence

MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo08874.1	Spo08874.1	mRNA

Homology

[Close]

BLAST of Spo08874.1 vs. NCBI nr
Match: gi|902214245|gb|KNA17451.1| (hypothetical protein SOVF_079820 [Spinacia oleracea])

HSP 1 Score: 251.9 bits (642), Expect = 5.700e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP
Sbjct: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG
Sbjct: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. NCBI nr
Match: gi|731314724|ref|XP_010688104.1| (PREDICTED: probable strigolactone esterase DAD2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 240.7 bits (613), Expect = 1.300e-60
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MGQNLLQALNVRVEGTGE YLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP
Sbjct: 1   MGQNLLQALNVRVEGTGENYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           DFFDF RYTTLDAYVDDLLDILDAL VTRCAYVGHSVSAMIGLLASIRRR+LFSK IL+G
Sbjct: 61  DFFDFRRYTTLDAYVDDLLDILDALGVTRCAYVGHSVSAMIGLLASIRRRELFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. NCBI nr
Match: gi|590597067|ref|XP_007018509.1| (Alpha/beta-Hydrolases superfamily protein [Theobroma cacao])

HSP 1 Score: 216.9 bits (551), Expect = 2.000e-53
Identity = 103/123 (83.74%), Postives = 114/123 (92.68%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG  LL+ALNVR++G+GEK+LVLAHGFGTDQSAWQRI+P FTPYYRVILYDL CAGSVNP
Sbjct: 1   MGNFLLEALNVRIDGSGEKFLVLAHGFGTDQSAWQRIVPLFTPYYRVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D+FDF RYTTLDAYVDDLL+ILDAL V RCAYVGHSVSAMIG+LASIRR +LFSK IL+G
Sbjct: 61  DYFDFRRYTTLDAYVDDLLNILDALGVDRCAYVGHSVSAMIGILASIRRPELFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. NCBI nr
Match: gi|950995456|ref|XP_014505398.1| (PREDICTED: probable strigolactone esterase DAD2 [Vigna radiata var. radiata])

HSP 1 Score: 213.0 bits (541), Expect = 2.900e-52
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG ++L ALNVRVEGTG+KYLVLAHGFGTDQSAWQR+LPYFT +Y VILYDL CAGSVNP
Sbjct: 1   MGSSILDALNVRVEGTGDKYLVLAHGFGTDQSAWQRVLPYFTRHYSVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D FD+ RYTTLDAYVDDLL+IL+AL V RCAYVGHS+SAMIG+LASIRR DLFSK IL+G
Sbjct: 61  DHFDYRRYTTLDAYVDDLLNILEALRVPRCAYVGHSISAMIGMLASIRRPDLFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. NCBI nr
Match: gi|920705721|gb|KOM48946.1| (hypothetical protein LR48_Vigan07g265000 [Vigna angularis])

HSP 1 Score: 213.0 bits (541), Expect = 2.900e-52
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG ++L ALNVRVEGTG+KYLVLAHGFGTDQSAWQR+LPYFT +Y VILYDL CAGSVNP
Sbjct: 1   MGSSILDALNVRVEGTGDKYLVLAHGFGTDQSAWQRVLPYFTRHYSVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D FD+ RYTTLDAYVDDLL+IL+AL V RCAYVGHS+SAMIG+LASIRR DLFSK IL+G
Sbjct: 61  DHFDYRRYTTLDAYVDDLLNILEALRVPRCAYVGHSISAMIGMLASIRRPDLFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD40_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079820 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.000e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP
Sbjct: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG
Sbjct: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D481_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g015160 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.200e-61
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MGQNLLQALNVRVEGTGE YLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP
Sbjct: 1   MGQNLLQALNVRVEGTGENYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           DFFDF RYTTLDAYVDDLLDILDAL VTRCAYVGHSVSAMIGLLASIRRR+LFSK IL+G
Sbjct: 61  DFFDFRRYTTLDAYVDDLLDILDALGVTRCAYVGHSVSAMIGLLASIRRRELFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Match: A0A061FMM2_THECC (Alpha/beta-Hydrolases superfamily protein OS=Theobroma cacao GN=TCM_034711 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.400e-53
Identity = 103/123 (83.74%), Postives = 114/123 (92.68%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG  LL+ALNVR++G+GEK+LVLAHGFGTDQSAWQRI+P FTPYYRVILYDL CAGSVNP
Sbjct: 1   MGNFLLEALNVRIDGSGEKFLVLAHGFGTDQSAWQRIVPLFTPYYRVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D+FDF RYTTLDAYVDDLL+ILDAL V RCAYVGHSVSAMIG+LASIRR +LFSK IL+G
Sbjct: 61  DYFDFRRYTTLDAYVDDLLNILDALGVDRCAYVGHSVSAMIGILASIRRPELFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Match: A0A0L9V1Y9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g265000 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.000e-52
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG ++L ALNVRVEGTG+KYLVLAHGFGTDQSAWQR+LPYFT +Y VILYDL CAGSVNP
Sbjct: 1   MGSSILDALNVRVEGTGDKYLVLAHGFGTDQSAWQRVLPYFTRHYSVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D FD+ RYTTLDAYVDDLL+IL+AL V RCAYVGHS+SAMIG+LASIRR DLFSK IL+G
Sbjct: 61  DHFDYRRYTTLDAYVDDLLNILEALRVPRCAYVGHSISAMIGMLASIRRPDLFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RQ85_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G263100 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.000e-52
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MG ++L ALNVRVEGTG+KYLVLAHGFGTDQSAWQR+LPYFT +Y VILYDL CAGSVNP
Sbjct: 1   MGSSILDALNVRVEGTGDKYLVLAHGFGTDQSAWQRVLPYFTRHYSVILYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           D FD+ RYTTLDAYVDDLL+IL+AL V RCAYVGHS+SAMIG+LASIRR DLFSK IL+G
Sbjct: 61  DHFDYRRYTTLDAYVDDLLNILEALRVPRCAYVGHSISAMIGMLASIRRPDLFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Match: DAD2_PETHY (Probable strigolactone esterase DAD2 OS=Petunia hybrida GN=DAD2 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.200e-51
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 1

		  
Query: 1   MGQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNP 60
           MGQ LL ALNVRV G+GE+ LVLAHGFGTDQSAW RILP+F   YRV+LYDL CAGSVNP
Sbjct: 1   MGQTLLDALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNP 60

Query: 61  DFFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVG 120
           DFFDF RYTTLD YVDDLL ILDAL +  CAYVGHSVSAMIG+LASIRR +LFSK IL+G
Sbjct: 61  DFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIG 120

Query: 121 ASP 124
           ASP
Sbjct: 121 ASP 123

[Close]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Match: D14_ARATH (Strigolactone esterase D14 OS=Arabidopsis thaliana GN=D14 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.500e-48
Identity = 90/120 (75.00%), Postives = 105/120 (87.50%), Query Frame = 1

		  
Query: 4   NLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFF 63
           N+L+ALNVRV GTG++ L LAHGFGTDQSAW  ILPYFT  YRV+LYDL CAGSVNPD+F
Sbjct: 5   NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYF 64

Query: 64  DFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 123
           DF+RYTTLD YVDDLL+I+D+L +  CAYVGHSVSAMIG++ASIRR +LFSK IL+G SP
Sbjct: 65  DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124

[Close]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Match: D14_ORYSJ (Strigolactone esterase D14 OS=Oryza sativa subsp. japonica GN=D14 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.200e-47
Identity = 90/122 (73.77%), Postives = 103/122 (84.43%), Query Frame = 1

		  
Query: 2   GQNLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPD 61
           G  LLQ LNVRV G+GE+ +VL+HGFGTDQSAW R+LPY T  +RV+LYDL CAGSVNPD
Sbjct: 53  GAKLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPD 112

Query: 62  FFDFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGA 121
            FDF RY  LDAYVDDLL ILDAL + RCA+VGHSVSAMIG+LASIRR DLF+K +L+GA
Sbjct: 113 HFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 172

Query: 122 SP 124
           SP
Sbjct: 173 SP 174

[Close]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Match: KAI2_ARATH (Probable esterase KAI2 OS=Arabidopsis thaliana GN=KAI2 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.200e-33
Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 1

		  
Query: 7   QALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFFDFH 66
           +A NV+V G+GE  +VL HGFGTDQS W+ ++P+    YRV+LYD   AG+ NPD+FDF 
Sbjct: 6   EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 65

Query: 67  RYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 124
           RY+ L+ Y  DL+ IL+ L +  C +VGHSVSAMIG+LAS+ R DLFSK +++ ASP
Sbjct: 66  RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASP 122

[Close]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Match: D14L_ORYSJ (Probable esterase D14L OS=Oryza sativa subsp. japonica GN=D14L PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.400e-32
Identity = 68/118 (57.63%), Postives = 85/118 (72.03%), Query Frame = 1

		  
Query: 7   QALNVRVEGTGEK-YLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFFDF 66
           +A N+RV G G++  +VLAHGFGTDQS W+ ++P+    YRV+L+D   AG  NPD+FDF
Sbjct: 6   EAHNLRVVGEGKRGVIVLAHGFGTDQSVWKHLVPHLVADYRVVLFDTMGAGPTNPDYFDF 65

Query: 67  HRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 124
            RY TL+ Y  DLL IL  L V  C YVGHSVSA+IG +ASI R DLFSK +L+ ASP
Sbjct: 66  SRYATLEGYALDLLAILQELRVASCIYVGHSVSAVIGAIASISRPDLFSKLVLLSASP 123

[Close]

BLAST of Spo08874.1 vs. TAIR (Arabidopsis)
Match: AT3G03990.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 193.4 bits (490), Expect = 8.500e-50
Identity = 90/120 (75.00%), Postives = 105/120 (87.50%), Query Frame = 1

		  
Query: 4   NLLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFF 63
           N+L+ALNVRV GTG++ L LAHGFGTDQSAW  ILPYFT  YRV+LYDL CAGSVNPD+F
Sbjct: 5   NILEALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYF 64

Query: 64  DFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 123
           DF+RYTTLD YVDDLL+I+D+L +  CAYVGHSVSAMIG++ASIRR +LFSK IL+G SP
Sbjct: 65  DFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSP 124

[Close]

BLAST of Spo08874.1 vs. TAIR (Arabidopsis)
Match: AT4G37470.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 2.900e-34
Identity = 65/117 (55.56%), Postives = 87/117 (74.36%), Query Frame = 1

		  
Query: 7   QALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSVNPDFFDFH 66
           +A NV+V G+GE  +VL HGFGTDQS W+ ++P+    YRV+LYD   AG+ NPD+FDF 
Sbjct: 6   EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFD 65

Query: 67  RYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 124
           RY+ L+ Y  DL+ IL+ L +  C +VGHSVSAMIG+LAS+ R DLFSK +++ ASP
Sbjct: 66  RYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASP 122

[Close]

BLAST of Spo08874.1 vs. TAIR (Arabidopsis)
Match: AT3G24420.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 6.100e-24
Identity = 48/120 (40.00%), Postives = 81/120 (67.50%), Query Frame = 1

		  
Query: 5   LLQALNVRVEGTGEKYLVLAHGFGTDQSAWQRILPYFTPYYRVILYDLACAGSV-NPDFF 64
           L  A+N ++ G+GE+ +VLAHGFG DQS W +I+P  +  ++V+++D   +G++ +   +
Sbjct: 10  LASAMNAKIIGSGERSMVLAHGFGGDQSVWDKIIPVLSQSFKVLVFDWLFSGAIKDQTLY 69

Query: 65  DFHRYTTLDAYVDDLLDILDALAVTRCAYVGHSVSAMIGLLASIRRRDLFSKQILVGASP 124
           D  +Y +LD + DDL+ +++ L      +VGHS+S +IG  ASI+R DLF+  +L+ ASP
Sbjct: 70  DPSKYNSLDVFSDDLIALMEELKFGPVVFVGHSMSGVIGCAASIKRPDLFTNLLLIAASP 129

The following BLAST results are available for this feature:

BLAST of Spo08874.1 vs. NCBI nr
BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
BLAST of Spo08874.1 vs. TAIR (Arabidopsis)

BLAST of Spo08874.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902214245\|gb\|KNA17451.1\|	5.7e-64	100.	hypothetical protein SOVF_0798...	[more]
gi\|731314724\|ref\|XP_010688104.1\|	1.3e-60	95.1	PREDICTED: probable strigolact...	[more]
gi\|590597067\|ref\|XP_007018509.1\|	2.0e-53	83.7	Alpha/beta-Hydrolases superfam...	[more]
gi\|950995456\|ref\|XP_014505398.1\|	2.9e-52	82.1	PREDICTED: probable strigolact...	[more]
gi\|920705721\|gb\|KOM48946.1\|	2.9e-52	82.1	hypothetical protein LR48_Viga...	[more]

BLAST of Spo08874.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RD40_SPIOL	4.0e-64	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D481_BETVU	9.2e-61	95.1	Uncharacterized protein OS=Bet...	[more]
A0A061FMM2_THECC	1.4e-53	83.7	Alpha/beta-Hydrolases superfam...	[more]
A0A0L9V1Y9_PHAAN	2.0e-52	82.1	Uncharacterized protein OS=Pha...	[more]
A0A0S3RQ85_PHAAN	2.0e-52	82.1	Uncharacterized protein OS=Vig...	[more]

BLAST of Spo08874.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
DAD2_PETHY	7.2e-51	79.6	Probable strigolactone esteras...	[more]
D14_ARATH	1.5e-48	75.0	Strigolactone esterase D14 OS=...	[more]
D14_ORYSJ	2.2e-47	73.7	Strigolactone esterase D14 OS=...	[more]
KAI2_ARATH	5.2e-33	55.5	Probable esterase KAI2 OS=Arab...	[more]
D14L_ORYSJ	3.4e-32	57.6	Probable esterase D14L OS=Oryz...	[more]

BLAST of Spo08874.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G03990.1	8.5e-50	75.0	alpha/beta-Hydrolases superfam...	[more]
AT4G37470.1	2.9e-34	55.5	alpha/beta-Hydrolases superfam...	[more]
AT3G24420.1	6.1e-24	40.0	alpha/beta-Hydrolases superfam...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000073	Alpha/beta hydrolase fold-1	PFAM	PF12697	Abhydrolase_6	coord: 21..120 score: 1.
None	No IPR available	PANTHER	PTHR10992	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	coord: 9..123 score: 3.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009805	coumarin biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0019521	D-gluconate metabolic process
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0009987	cellular process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015824	proline transport
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0009611	response to wounding
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
biological_process	GO:0009811	stilbene biosynthetic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005829	cytosol
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0008442	3-hydroxyisobutyrate dehydrogenase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0016207	4-coumarate-CoA ligase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0080048	GDP-D-glucose phosphorylase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20571	0.96	Barchart \| Table
Spo21711	0.76	Barchart \| Table
Spo22277	0.73	Barchart \| Table
Spo24490	0.72	Barchart \| Table
Spo04094	0.72	Barchart \| Table
Spo06753	0.71	Barchart \| Table
Spo21162	0.71	Barchart \| Table
Spo04424	0.71	Barchart \| Table
Spo12890	0.70	Barchart \| Table
Spo25439	0.69	Barchart \| Table
Spo21977	0.69	Barchart \| Table
Spo16205	0.69	Barchart \| Table
Spo11721	0.69	Barchart \| Table
Spo12268	0.69	Barchart \| Table
Spo12889	0.69	Barchart \| Table
Spo02775	0.68	Barchart \| Table
Spo28082	0.68	Barchart \| Table
Spo08108	0.68	Barchart \| Table
Spo05898	0.68	Barchart \| Table
Spo22586	0.67	Barchart \| Table
Spo10352	0.67	Barchart \| Table
Spo10958	0.67	Barchart \| Table
Spo12296	0.66	Barchart \| Table
Spo01754	0.66	Barchart \| Table
Spo03551	0.66	Barchart \| Table
Spo05635	0.66	Barchart \| Table
Spo11653	0.66	Barchart \| Table
Spo01039	0.66	Barchart \| Table
Spo13647	0.66	Barchart \| Table
Spo28001	0.66	Barchart \| Table
Spo15056	0.65	Barchart \| Table
Spo24867	0.65	Barchart \| Table
Spo08635	0.65	Barchart \| Table
Spo07579	0.65	Barchart \| Table
Spo19461	0.65	Barchart \| Table